Wall clock time and date at job start Tue Mar 31 2020 06:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 C 1.52994 * 109.47464 * 239.99629 * 2 1 3 5 5 C 1.50698 * 109.46862 * 119.99787 * 2 1 3 6 6 C 1.32991 * 120.00376 * 0.02562 * 5 2 1 7 7 C 1.47105 * 120.00510 * 179.72397 * 6 5 2 8 8 O 1.21613 * 119.99856 * 355.67217 * 7 6 5 9 9 N 1.34774 * 120.00070 * 175.66600 * 7 6 5 10 10 C 1.46960 * 120.59610 * 5.11601 * 9 7 6 11 11 C 1.53813 * 108.39870 * 124.75118 * 10 9 7 12 12 N 1.46969 * 108.57996 * 49.64219 * 11 10 9 13 13 C 1.34767 * 120.59932 * 124.66737 * 12 11 10 14 14 O 1.21693 * 119.99920 * 5.09667 * 13 12 11 15 15 C 1.46372 * 120.00219 * 185.09931 * 13 12 11 16 16 H 1.07998 * 120.00296 * 337.01247 * 15 13 12 17 17 C 1.40047 * 120.00074 * 157.00994 * 15 13 12 18 18 N 1.30674 * 120.00296 * 171.67948 * 17 15 13 19 19 Si 1.86805 * 120.00106 * 351.67750 * 17 15 13 20 20 H 1.48501 * 109.47207 * 84.54429 * 19 17 15 21 21 H 1.48500 * 109.47139 * 204.54917 * 19 17 15 22 22 H 1.48500 * 109.46940 * 324.54482 * 19 17 15 23 23 C 1.46966 * 118.80677 * 304.64564 * 12 11 10 24 24 C 1.46972 * 120.59208 * 185.38653 * 9 7 6 25 25 H 1.09001 * 109.46890 * 299.99899 * 1 2 3 26 26 H 1.09003 * 109.46888 * 60.00200 * 1 2 3 27 27 H 1.08999 * 109.46572 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47197 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46723 * 299.99888 * 3 2 1 30 30 H 1.09003 * 109.47009 * 59.99706 * 3 2 1 31 31 H 1.09000 * 109.47458 * 300.00350 * 4 2 1 32 32 H 1.09003 * 109.46929 * 60.00196 * 4 2 1 33 33 H 1.08994 * 109.47625 * 180.02562 * 4 2 1 34 34 H 1.08002 * 120.00374 * 180.02562 * 5 2 1 35 35 H 1.08004 * 119.99928 * 359.97438 * 6 5 2 36 36 H 1.08997 * 109.61269 * 244.53625 * 10 9 7 37 37 H 1.08999 * 109.61026 * 5.04827 * 10 9 7 38 38 H 1.08994 * 109.74529 * 289.84864 * 11 10 9 39 39 H 1.09005 * 109.53165 * 169.30306 * 11 10 9 40 40 H 0.96996 * 120.00034 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.61267 * 295.48081 * 23 12 11 42 42 H 1.09006 * 109.75252 * 175.05642 * 23 12 11 43 43 H 1.08996 * 109.60890 * 354.95454 * 24 9 7 44 44 H 1.09004 * 109.60673 * 115.46229 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.1681 -1.2162 2.1057 7 6 1.6584 -1.9149 3.3038 8 8 2.8509 -2.0993 3.4549 9 7 0.7859 -2.3507 4.2340 10 6 -0.6624 -2.2354 4.0134 11 6 -1.2896 -3.6315 4.1667 12 7 -0.8095 -4.2251 5.4226 13 6 -1.6819 -4.6610 6.3528 14 8 -2.8761 -4.6507 6.1192 15 6 -1.1929 -5.1468 7.6441 16 1 -0.1792 -5.5075 7.7367 17 6 -2.0396 -5.1438 8.7596 18 7 -1.6623 -5.7240 9.8680 19 14 -3.7086 -4.3101 8.6632 20 1 -4.6988 -5.2507 8.0802 21 1 -4.1441 -3.9152 10.0269 22 1 -3.6094 -3.1016 7.8059 23 6 0.6389 -4.3353 5.6456 24 6 1.2660 -2.9445 5.4898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 -1.7490 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.0941 -0.8087 1.4017 35 1 0.1062 -1.1175 1.9348 36 1 -1.0917 -1.5558 4.7496 37 1 -0.8504 -1.8566 3.0088 38 1 -0.9946 -4.2618 3.3279 39 1 -2.3755 -3.5420 4.1961 40 1 -2.2489 -5.7222 10.6404 41 1 1.0713 -5.0158 4.9120 42 1 0.8293 -4.7120 6.6507 43 1 2.3519 -3.0340 5.4604 44 1 0.9710 -2.3141 6.3287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219505312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:58 Heat of formation + Delta-G solvation = -81.809585 kcal Electronic energy + Delta-G solvation = -24065.322629 eV Core-core repulsion = 20595.881749 eV Total energy + Delta-G solvation = -3469.440880 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.39052 -40.06909 -38.68235 -37.70057 -35.01258 -34.88099 -32.97420 -32.03369 -29.46739 -28.21400 -28.08184 -27.97702 -25.41972 -24.41760 -23.08757 -21.46812 -20.02343 -19.15132 -18.80764 -18.34363 -17.69690 -16.98471 -16.72700 -16.35654 -16.14584 -15.82576 -15.65304 -15.34410 -15.03725 -14.67682 -14.57906 -14.44788 -14.08969 -13.95935 -13.46001 -13.23677 -13.16499 -12.99147 -12.89752 -12.66196 -12.52296 -12.44686 -12.32414 -12.28265 -11.92057 -11.91511 -11.65303 -11.59109 -11.19690 -10.86732 -10.45805 -10.12562 -10.06415 -9.18452 -8.78607 -6.99719 0.38032 1.31759 1.35770 1.55232 1.87251 2.04907 2.26236 2.29875 2.62380 3.25716 3.41055 3.81783 3.84225 3.88492 4.05412 4.07305 4.09639 4.18564 4.35658 4.39529 4.42828 4.57209 4.65035 4.70036 4.78273 4.81015 4.83757 4.92972 4.98733 5.02415 5.05153 5.10867 5.15151 5.23592 5.27947 5.36147 5.44393 5.51865 5.57731 5.66436 5.91481 6.19179 6.37974 6.61099 7.05101 7.09939 7.92019 8.27506 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030112 B = 0.003355 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.624584 B = 8343.770810 C = 8820.155912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.041 4.041 6 C -0.231 4.231 7 C 0.542 3.458 8 O -0.592 6.592 9 N -0.605 5.605 10 C 0.102 3.898 11 C 0.099 3.901 12 N -0.632 5.632 13 C 0.558 3.442 14 O -0.640 6.640 15 C -0.555 4.555 16 H 0.084 0.916 17 C 0.071 3.929 18 N -0.853 5.853 19 Si 1.004 2.996 20 H -0.290 1.290 21 H -0.294 1.294 22 H -0.282 1.282 23 C 0.111 3.889 24 C 0.104 3.896 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.158 0.842 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.291 0.709 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 14.027 -20.060 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.047 4.047 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.060 4.060 6 C -0.251 4.251 7 C 0.335 3.665 8 O -0.475 6.475 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.024 4.024 12 N -0.365 5.365 13 C 0.365 3.635 14 O -0.534 6.534 15 C -0.591 4.591 16 H 0.101 0.899 17 C -0.145 4.145 18 N -0.484 5.484 19 Si 0.834 3.166 20 H -0.217 1.217 21 H -0.222 1.222 22 H -0.208 1.208 23 C -0.013 4.013 24 C -0.019 4.019 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.175 0.825 36 H 0.089 0.911 37 H 0.148 0.852 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.622 13.850 -19.891 24.881 hybrid contribution -0.448 -0.283 0.660 0.846 sum 5.174 13.567 -19.232 24.098 Atomic orbital electron populations 1.22051 0.93083 1.02649 1.03050 1.19845 0.96810 0.95763 0.92244 1.21839 1.01348 0.93568 1.02767 1.21837 1.01349 1.00253 0.96103 1.23902 0.99498 0.89830 0.92820 1.22830 1.02369 1.04948 0.94952 1.19215 0.85167 0.78167 0.83921 1.90727 1.17528 1.59934 1.79270 1.48041 1.07311 1.60141 1.18185 1.22412 0.78524 0.96720 1.04492 1.21952 1.00452 0.93819 0.86224 1.47692 1.06199 1.63880 1.18746 1.18247 0.84299 0.76287 0.84673 1.90241 1.17990 1.64953 1.80166 1.20939 1.01258 1.44196 0.92719 0.89851 1.26210 1.01905 0.92296 0.94042 1.69559 1.39409 1.35853 1.03536 0.84764 0.78428 0.79335 0.74055 1.21709 1.22246 1.20799 1.21906 0.79948 0.96318 1.03166 1.21921 1.00361 0.93952 0.85688 0.91887 0.90815 0.91930 0.92362 0.90508 0.92678 0.92744 0.90484 0.92371 0.87211 0.82516 0.91057 0.85176 0.91222 0.89429 0.89819 0.92007 0.88635 0.88343 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 7.13 71.98 0.51 -1.04 16 2 C -0.05 -0.57 0.99 -52.93 -0.05 -0.62 16 3 C -0.14 -1.47 8.46 71.98 0.61 -0.86 16 4 C -0.14 -1.51 8.46 71.98 0.61 -0.90 16 5 C -0.04 -0.74 8.33 24.52 0.20 -0.54 16 6 C -0.23 -4.71 8.31 23.43 0.19 -4.52 16 7 C 0.54 15.63 7.63 86.57 0.66 16.29 16 8 O -0.59 -21.17 15.64 -4.07 -0.06 -21.24 16 9 N -0.61 -17.48 2.94 -821.43 -2.42 -19.90 16 10 C 0.10 2.57 6.51 86.57 0.56 3.13 16 11 C 0.10 3.22 6.60 86.56 0.57 3.79 16 12 N -0.63 -26.13 2.95 -822.23 -2.42 -28.55 16 13 C 0.56 28.93 7.10 86.36 0.61 29.54 16 14 O -0.64 -36.00 12.41 -4.33 -0.05 -36.05 16 15 C -0.55 -30.86 9.19 24.83 0.23 -30.64 16 16 H 0.08 4.66 6.22 -2.91 -0.02 4.65 16 17 C 0.07 3.98 5.52 85.30 0.47 4.45 16 18 N -0.85 -47.89 13.92 21.84 0.30 -47.59 16 19 Si 1.00 50.77 25.86 68.60 1.77 52.55 16 20 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.28 -14.73 6.90 99.48 0.69 -14.04 16 23 C 0.11 4.00 6.50 86.41 0.56 4.56 16 24 C 0.10 3.34 6.60 86.41 0.57 3.91 16 25 H 0.06 0.64 7.50 -2.39 -0.02 0.63 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.65 7.50 -2.39 -0.02 0.63 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 2.37 7.50 -2.91 -0.02 2.35 16 35 H 0.16 2.38 3.58 -2.91 -0.01 2.37 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.13 2.22 5.34 -2.39 -0.01 2.20 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.09 3.07 7.02 -2.38 -0.02 3.05 16 40 H 0.29 14.95 8.29 -92.71 -0.77 14.18 16 41 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.10 3.78 5.43 -2.38 -0.01 3.76 16 43 H 0.10 3.12 6.99 -2.39 -0.02 3.11 16 44 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -70.70 347.09 4.41 -66.29 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.97 Total: 7.92 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 6.32 Total: 26.56 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -4.53 Total: -96.03 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -0.12 Total: -57.29 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 1.77 Total: 52.55 kcal Total: -70.70 4.41 -66.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219505312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.521 kcal (2) G-P(sol) polarization free energy of solvation -70.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds