Wall clock time and date at job start Tue Mar 31 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 C 1.53001 * 109.46797 * 305.92868 * 3 2 1 5 5 C 1.52997 * 109.47597 * 294.75326 * 4 3 2 6 6 C 1.52996 * 109.47319 * 65.93488 * 3 2 1 7 7 N 1.46499 * 109.47408 * 65.00010 * 6 3 2 8 8 C 1.46496 * 119.99827 * 90.00079 * 7 6 3 9 9 C 1.50696 * 109.47269 * 95.71589 * 8 7 6 10 10 H 1.08001 * 119.99666 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00387 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99550 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00327 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47210 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47088 * 120.00280 * 13 11 9 16 16 H 1.48492 * 109.47547 * 240.00295 * 13 11 9 17 17 C 1.34778 * 119.99876 * 270.00259 * 7 6 3 18 18 O 1.21613 * 120.00278 * 4.97950 * 17 7 6 19 19 C 1.47415 * 119.99794 * 184.98204 * 17 7 6 20 20 N 1.36072 * 126.45009 * 3.62131 * 19 17 7 21 21 C 1.29937 * 108.47472 * 179.86153 * 20 19 17 22 22 O 1.34048 * 109.24600 * 0.40392 * 21 20 19 23 23 C 1.34258 * 108.22836 * 359.74560 * 22 21 20 24 24 C 1.50700 * 126.52709 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.46954 * 67.11018 * 1 2 3 26 26 H 1.08998 * 109.47152 * 187.10824 * 1 2 3 27 27 H 1.09001 * 109.47289 * 307.11003 * 1 2 3 28 28 H 1.09000 * 109.47260 * 239.99524 * 2 1 3 29 29 H 1.09006 * 109.47059 * 119.99669 * 2 1 3 30 30 H 1.08997 * 109.46736 * 185.93452 * 3 2 1 31 31 H 1.09001 * 109.46680 * 54.75271 * 4 3 2 32 32 H 1.08998 * 109.46645 * 174.74763 * 4 3 2 33 33 H 1.08993 * 109.47213 * 185.45917 * 5 4 3 34 34 H 1.09005 * 109.46857 * 305.45766 * 5 4 3 35 35 H 1.09001 * 109.46896 * 65.45568 * 5 4 3 36 36 H 1.09003 * 109.46813 * 305.00104 * 6 3 2 37 37 H 1.08998 * 109.46841 * 185.00178 * 6 3 2 38 38 H 1.09001 * 109.47036 * 215.71736 * 8 7 6 39 39 H 1.08996 * 109.47088 * 335.71219 * 8 7 6 40 40 H 0.97000 * 119.99815 * 179.97438 * 12 11 9 41 41 H 1.08004 * 125.37431 * 180.11379 * 21 20 19 42 42 H 1.08997 * 109.46855 * 270.04487 * 24 23 22 43 43 H 1.08996 * 109.46809 * 30.04831 * 24 23 22 44 44 H 1.09005 * 109.46852 * 150.04188 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4119 2.2054 -1.1681 5 6 1.9014 1.6087 -2.4891 6 6 1.6554 2.1195 1.3171 7 7 2.3520 1.4622 2.4256 8 6 3.6706 1.9403 2.8485 9 6 3.5123 2.8920 4.0061 10 1 2.5280 3.1178 4.3889 11 6 4.6242 3.4738 4.5774 12 7 5.8229 3.1985 4.1116 13 14 4.4280 4.6540 6.0119 14 1 2.9873 4.7950 6.3434 15 1 5.1575 4.1245 7.1920 16 1 4.9830 5.9805 5.6411 17 6 1.7798 0.4175 3.0564 18 8 0.7281 -0.0371 2.6487 19 6 2.4287 -0.1739 4.2405 20 7 3.5630 0.2700 4.8470 21 6 3.8203 -0.5056 5.8573 22 8 2.8841 -1.4622 5.9296 23 6 2.0093 -1.2702 4.9294 24 6 0.7946 -2.1091 4.6267 25 1 -0.3633 0.3997 -0.9468 26 1 -0.3633 -1.0197 0.1272 27 1 -0.3634 0.6200 0.8195 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1248 1.4443 -0.1063 31 1 0.3263 2.1246 -1.1130 32 1 1.7013 3.2549 -1.1140 33 1 1.5320 2.2112 -3.3189 34 1 2.9913 1.6011 -2.5026 35 1 1.5296 0.5888 -2.5869 36 1 0.5786 2.0392 1.4660 37 1 1.9399 3.1711 1.2816 38 1 4.2830 1.0927 3.1561 39 1 4.1538 2.4552 2.0182 40 1 6.6051 3.6080 4.5133 41 1 4.6589 -0.3992 6.5296 42 1 1.0691 -2.9124 3.9430 43 1 0.4080 -2.5358 5.5522 44 1 0.0281 -1.4858 4.1660 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264138804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:14 Heat of formation + Delta-G solvation = -16.373440 kcal Electronic energy + Delta-G solvation = -25383.185814 eV Core-core repulsion = 21916.582458 eV Total energy + Delta-G solvation = -3466.603356 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.76111 -39.31737 -36.77650 -34.83638 -33.85300 -32.29290 -31.87246 -30.75309 -28.57797 -27.12026 -26.42268 -24.34335 -23.28808 -22.92526 -22.18534 -21.02975 -19.03045 -18.41215 -16.88357 -16.50822 -16.07365 -15.87091 -15.34112 -15.19280 -14.71725 -14.29593 -14.10452 -13.66000 -13.26210 -13.04865 -12.85087 -12.77733 -12.50837 -12.25655 -12.16297 -12.09412 -11.65079 -11.54556 -11.25311 -11.12484 -10.85840 -10.84163 -10.74472 -10.45293 -10.22799 -10.08126 -9.98056 -9.91194 -9.50592 -9.34684 -9.05265 -8.34093 -8.29007 -7.53766 -5.93439 -3.92311 1.68542 2.87202 3.15018 3.30685 3.38979 3.43681 3.93183 4.10815 4.50419 4.78907 5.15192 5.17317 5.19111 5.27744 5.41158 5.43028 5.54807 5.61740 5.69606 5.72927 5.75382 5.91659 6.01687 6.03728 6.07903 6.17114 6.19090 6.22619 6.33966 6.38986 6.42549 6.45289 6.58980 6.67532 6.74710 6.85262 6.94259 6.97410 7.55028 7.77694 7.97794 8.24551 8.35285 8.43103 8.99109 9.10523 9.68120 11.15375 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.007053 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.207762 B = 3968.748963 C = 5801.858195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C -0.103 4.103 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.123 3.877 7 N -0.576 5.576 8 C 0.237 3.763 9 C -0.493 4.493 10 H 0.049 0.951 11 C 0.069 3.931 12 N -0.894 5.894 13 Si 0.884 3.116 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.287 1.287 17 C 0.595 3.405 18 O -0.563 6.563 19 C -0.056 4.056 20 N -0.383 5.383 21 C 0.139 3.861 22 O -0.214 6.214 23 C 0.008 3.992 24 C -0.067 4.067 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.258 0.742 41 H 0.244 0.756 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.844 -7.791 -4.229 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C -0.122 4.122 4 C -0.157 4.157 5 C -0.206 4.206 6 C 0.000 4.000 7 N -0.304 5.304 8 C 0.118 3.882 9 C -0.532 4.532 10 H 0.068 0.932 11 C -0.132 4.132 12 N -0.534 5.534 13 Si 0.713 3.287 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.213 1.213 17 C 0.383 3.617 18 O -0.445 6.445 19 C -0.177 4.177 20 N -0.109 5.109 21 C -0.089 4.089 22 O -0.102 6.102 23 C -0.048 4.048 24 C -0.123 4.123 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.260 0.740 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.788 -7.420 -4.593 11.056 hybrid contribution 0.111 0.371 1.370 1.424 sum -6.677 -7.048 -3.223 10.230 Atomic orbital electron populations 1.21733 0.95886 1.01237 1.00571 1.21461 0.96415 0.95812 1.00981 1.21602 1.00375 0.95774 0.94478 1.21551 1.00731 0.99269 0.94135 1.21762 1.01134 1.00750 0.96949 1.21470 0.97375 0.96198 0.84979 1.48105 1.21493 1.29692 1.31116 1.19710 0.77280 0.96434 0.94786 1.21213 0.92593 1.24254 1.15123 0.93225 1.24717 0.95115 0.96680 0.96660 1.69934 0.97552 1.44121 1.41764 0.86669 0.77898 0.81050 0.83058 1.20198 1.21201 1.21290 1.16748 0.83664 0.80248 0.81029 1.90662 1.23550 1.63511 1.66756 1.21630 0.96920 0.97485 1.01663 1.71686 1.11627 1.22766 1.04838 1.28255 0.94906 0.85684 1.00067 1.84285 1.32341 1.48564 1.44976 1.23539 0.94050 0.98377 0.88851 1.20427 0.91267 0.98724 1.01920 0.94345 0.94005 0.91135 0.93653 0.91561 0.91250 0.91618 0.92194 0.93350 0.92902 0.92777 0.90755 0.90624 0.92000 0.95575 0.93265 0.73989 0.90059 0.91163 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.03 37.16 0.30 -1.72 16 2 C -0.11 -1.72 4.80 -26.73 -0.13 -1.85 16 3 C -0.10 -1.63 2.37 -90.62 -0.21 -1.84 16 4 C -0.12 -1.56 5.06 -26.73 -0.14 -1.69 16 5 C -0.15 -1.73 9.54 37.16 0.35 -1.37 16 6 C 0.12 2.25 4.87 -4.04 -0.02 2.23 16 7 N -0.58 -12.34 2.36 -176.34 -0.42 -12.76 16 8 C 0.24 5.86 4.76 -5.20 -0.02 5.84 16 9 C -0.49 -13.19 7.72 -34.44 -0.27 -13.46 16 10 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 11 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 12 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 13 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 C 0.60 12.53 6.33 -12.52 -0.08 12.45 16 18 O -0.56 -11.23 10.22 5.27 0.05 -11.18 16 19 C -0.06 -1.17 6.56 -83.02 -0.54 -1.71 16 20 N -0.38 -8.32 6.86 -11.48 -0.08 -8.40 16 21 C 0.14 2.43 13.19 51.96 0.69 3.11 16 22 O -0.21 -3.58 10.73 6.51 0.07 -3.51 16 23 C 0.01 0.14 7.44 -35.08 -0.26 -0.12 16 24 C -0.07 -0.90 9.92 36.01 0.36 -0.54 16 25 H 0.04 0.49 6.66 -51.93 -0.35 0.15 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.15 4.94 -51.93 -0.26 0.89 16 28 H 0.04 0.66 7.00 -51.93 -0.36 0.29 16 29 H 0.07 1.22 5.43 -51.93 -0.28 0.94 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.82 6.19 -51.93 -0.32 0.50 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.62 6.99 -51.93 -0.36 0.25 16 36 H 0.07 1.34 5.72 -51.93 -0.30 1.04 16 37 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.06 1.64 5.83 -51.93 -0.30 1.34 16 39 H 0.03 0.68 8.03 -51.93 -0.42 0.27 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.24 3.21 8.06 -52.48 -0.42 2.79 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.11 1.60 6.41 -51.93 -0.33 1.27 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -29.92 342.81 -6.19 -36.11 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.63 Total: 1.56 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.08 Total: 1.11 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.24 Total: -45.55 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.12 Total: -14.68 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.92 -6.19 -36.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264138804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.735 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds