Wall clock time and date at job start Tue Mar 31 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 C 1.53001 * 109.46797 * 305.92868 * 3 2 1 5 5 C 1.52997 * 109.47597 * 294.75326 * 4 3 2 6 6 C 1.52996 * 109.47319 * 65.93488 * 3 2 1 7 7 N 1.46499 * 109.47408 * 65.00010 * 6 3 2 8 8 C 1.46496 * 119.99827 * 90.00079 * 7 6 3 9 9 C 1.50696 * 109.47269 * 95.71589 * 8 7 6 10 10 H 1.08001 * 119.99666 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00387 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99550 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00327 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47210 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47088 * 120.00280 * 13 11 9 16 16 H 1.48492 * 109.47547 * 240.00295 * 13 11 9 17 17 C 1.34778 * 119.99876 * 270.00259 * 7 6 3 18 18 O 1.21613 * 120.00278 * 4.97950 * 17 7 6 19 19 C 1.47415 * 119.99794 * 184.98204 * 17 7 6 20 20 N 1.36072 * 126.45009 * 3.62131 * 19 17 7 21 21 C 1.29937 * 108.47472 * 179.86153 * 20 19 17 22 22 O 1.34048 * 109.24600 * 0.40392 * 21 20 19 23 23 C 1.34258 * 108.22836 * 359.74560 * 22 21 20 24 24 C 1.50700 * 126.52709 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.46954 * 67.11018 * 1 2 3 26 26 H 1.08998 * 109.47152 * 187.10824 * 1 2 3 27 27 H 1.09001 * 109.47289 * 307.11003 * 1 2 3 28 28 H 1.09000 * 109.47260 * 239.99524 * 2 1 3 29 29 H 1.09006 * 109.47059 * 119.99669 * 2 1 3 30 30 H 1.08997 * 109.46736 * 185.93452 * 3 2 1 31 31 H 1.09001 * 109.46680 * 54.75271 * 4 3 2 32 32 H 1.08998 * 109.46645 * 174.74763 * 4 3 2 33 33 H 1.08993 * 109.47213 * 185.45917 * 5 4 3 34 34 H 1.09005 * 109.46857 * 305.45766 * 5 4 3 35 35 H 1.09001 * 109.46896 * 65.45568 * 5 4 3 36 36 H 1.09003 * 109.46813 * 305.00104 * 6 3 2 37 37 H 1.08998 * 109.46841 * 185.00178 * 6 3 2 38 38 H 1.09001 * 109.47036 * 215.71736 * 8 7 6 39 39 H 1.08996 * 109.47088 * 335.71219 * 8 7 6 40 40 H 0.97000 * 119.99815 * 179.97438 * 12 11 9 41 41 H 1.08004 * 125.37431 * 180.11379 * 21 20 19 42 42 H 1.08997 * 109.46855 * 270.04487 * 24 23 22 43 43 H 1.08996 * 109.46809 * 30.04831 * 24 23 22 44 44 H 1.09005 * 109.46852 * 150.04188 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4119 2.2054 -1.1681 5 6 1.9014 1.6087 -2.4891 6 6 1.6554 2.1195 1.3171 7 7 2.3520 1.4622 2.4256 8 6 3.6706 1.9403 2.8485 9 6 3.5123 2.8920 4.0061 10 1 2.5280 3.1178 4.3889 11 6 4.6242 3.4738 4.5774 12 7 5.8229 3.1985 4.1116 13 14 4.4280 4.6540 6.0119 14 1 2.9873 4.7950 6.3434 15 1 5.1575 4.1245 7.1920 16 1 4.9830 5.9805 5.6411 17 6 1.7798 0.4175 3.0564 18 8 0.7281 -0.0371 2.6487 19 6 2.4287 -0.1739 4.2405 20 7 3.5630 0.2700 4.8470 21 6 3.8203 -0.5056 5.8573 22 8 2.8841 -1.4622 5.9296 23 6 2.0093 -1.2702 4.9294 24 6 0.7946 -2.1091 4.6267 25 1 -0.3633 0.3997 -0.9468 26 1 -0.3633 -1.0197 0.1272 27 1 -0.3634 0.6200 0.8195 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1248 1.4443 -0.1063 31 1 0.3263 2.1246 -1.1130 32 1 1.7013 3.2549 -1.1140 33 1 1.5320 2.2112 -3.3189 34 1 2.9913 1.6011 -2.5026 35 1 1.5296 0.5888 -2.5869 36 1 0.5786 2.0392 1.4660 37 1 1.9399 3.1711 1.2816 38 1 4.2830 1.0927 3.1561 39 1 4.1538 2.4552 2.0182 40 1 6.6051 3.6080 4.5133 41 1 4.6589 -0.3992 6.5296 42 1 1.0691 -2.9124 3.9430 43 1 0.4080 -2.5358 5.5522 44 1 0.0281 -1.4858 4.1660 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264138804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:14 Heat of formation + Delta-G solvation = -33.722629 kcal Electronic energy + Delta-G solvation = -25383.938131 eV Core-core repulsion = 21916.582458 eV Total energy + Delta-G solvation = -3467.355673 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.17384 -40.86795 -38.11789 -36.50544 -35.34736 -34.26569 -33.18116 -31.87907 -30.07133 -28.84778 -27.85443 -25.69200 -24.97076 -24.37084 -23.63098 -22.40105 -20.47462 -19.79324 -18.62895 -18.24811 -17.62555 -17.37170 -16.78403 -16.62812 -16.30002 -15.97052 -15.44990 -15.06299 -14.61524 -14.36946 -14.21219 -14.15174 -13.87874 -13.78187 -13.62616 -13.42365 -13.06976 -12.87903 -12.74652 -12.72027 -12.50043 -12.35022 -12.12070 -12.02071 -11.94649 -11.64297 -11.31872 -11.21672 -11.17051 -10.96737 -10.66104 -10.34994 -9.76922 -9.23812 -8.01728 -6.07378 0.26927 1.36821 1.40160 1.42142 1.51409 1.81473 2.34069 2.49531 2.56895 3.30093 3.42010 3.83405 3.87746 3.95265 4.02342 4.10082 4.40655 4.43576 4.48981 4.61322 4.64193 4.67288 4.72493 4.76437 4.90282 4.93283 5.01612 5.05277 5.06598 5.12866 5.18535 5.22871 5.27233 5.36648 5.39163 5.48307 5.55766 5.60053 5.73003 5.86556 5.99065 6.29079 6.61485 6.82191 7.00476 7.40180 7.57347 9.06095 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.007053 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.207762 B = 3968.748963 C = 5801.858195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C -0.095 4.095 4 C -0.114 4.114 5 C -0.145 4.145 6 C 0.121 3.879 7 N -0.586 5.586 8 C 0.260 3.740 9 C -0.492 4.492 10 H 0.031 0.969 11 C 0.031 3.969 12 N -0.920 5.920 13 Si 0.941 3.059 14 H -0.282 1.282 15 H -0.277 1.277 16 H -0.282 1.282 17 C 0.590 3.410 18 O -0.556 6.556 19 C -0.103 4.103 20 N -0.437 5.437 21 C 0.151 3.849 22 O -0.203 6.203 23 C 0.027 3.973 24 C -0.063 4.063 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.003 0.997 40 H 0.260 0.740 41 H 0.280 0.720 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.882 -8.599 -4.085 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C -0.115 4.115 4 C -0.152 4.152 5 C -0.202 4.202 6 C -0.001 4.001 7 N -0.314 5.314 8 C 0.139 3.861 9 C -0.532 4.532 10 H 0.049 0.951 11 C -0.167 4.167 12 N -0.561 5.561 13 Si 0.768 3.232 14 H -0.207 1.207 15 H -0.202 1.202 16 H -0.208 1.208 17 C 0.379 3.621 18 O -0.439 6.439 19 C -0.222 4.222 20 N -0.164 5.164 21 C -0.077 4.077 22 O -0.091 6.091 23 C -0.030 4.030 24 C -0.120 4.120 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.021 0.979 40 H 0.069 0.931 41 H 0.295 0.705 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.851 -8.234 -4.463 12.221 hybrid contribution 0.409 0.546 1.354 1.516 sum -7.442 -7.688 -3.109 11.142 Atomic orbital electron populations 1.21637 0.94724 1.01133 1.01020 1.21389 0.97288 0.95258 1.00196 1.21514 0.99338 0.96303 0.94300 1.21525 1.01095 0.98939 0.93607 1.21736 1.00774 1.01260 0.96478 1.21605 0.97200 0.95830 0.85470 1.48043 1.20732 1.30380 1.32273 1.19191 0.78657 0.95056 0.93165 1.21216 0.91700 1.24613 1.15622 0.95095 1.25292 0.94799 0.97965 0.98675 1.70025 0.98090 1.45076 1.42896 0.85790 0.77403 0.79354 0.80631 1.20748 1.20244 1.20805 1.16925 0.83827 0.80065 0.81279 1.90642 1.23144 1.63262 1.66809 1.21760 0.98017 0.99615 1.02851 1.71552 1.12939 1.25103 1.06822 1.28954 0.95095 0.84543 0.99128 1.84326 1.32093 1.48156 1.44503 1.24168 0.94194 0.97175 0.87469 1.20574 0.89201 0.98362 1.03823 0.92057 0.93788 0.92974 0.92151 0.94563 0.93275 0.90558 0.92132 0.91449 0.93551 0.92291 0.90386 0.91581 0.93702 0.97916 0.93081 0.70490 0.88182 0.88036 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.03 71.98 0.58 -3.00 16 2 C -0.10 -3.23 4.80 30.59 0.15 -3.08 16 3 C -0.09 -3.04 2.37 -10.79 -0.03 -3.07 16 4 C -0.11 -2.84 5.06 30.59 0.15 -2.69 16 5 C -0.15 -3.10 9.54 71.98 0.69 -2.41 16 6 C 0.12 4.58 4.87 86.38 0.42 5.00 16 7 N -0.59 -26.13 2.36 -830.07 -1.96 -28.08 16 8 C 0.26 13.45 4.76 85.63 0.41 13.85 16 9 C -0.49 -27.13 7.72 25.60 0.20 -26.93 16 10 H 0.03 1.79 7.81 -2.91 -0.02 1.76 16 11 C 0.03 1.72 5.46 84.66 0.46 2.18 16 12 N -0.92 -52.49 13.29 21.45 0.28 -52.20 16 13 Si 0.94 43.97 29.54 68.60 2.03 45.99 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 17 C 0.59 25.48 6.33 86.66 0.55 26.03 16 18 O -0.56 -22.40 10.22 -4.07 -0.04 -22.44 16 19 C -0.10 -4.33 6.56 40.41 0.27 -4.06 16 20 N -0.44 -19.28 6.86 -305.14 -2.09 -21.37 16 21 C 0.15 5.15 13.19 130.52 1.72 6.87 16 22 O -0.20 -6.46 10.73 0.38 0.00 -6.45 16 23 C 0.03 0.92 7.44 25.19 0.19 1.11 16 24 C -0.06 -1.57 9.92 71.24 0.71 -0.86 16 25 H 0.06 1.42 6.66 -2.39 -0.02 1.41 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.66 4.94 -2.39 -0.01 1.64 16 28 H 0.06 1.68 7.00 -2.39 -0.02 1.66 16 29 H 0.04 1.34 5.43 -2.38 -0.01 1.33 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.76 6.19 -2.39 -0.01 1.74 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 1.20 6.99 -2.39 -0.02 1.18 16 36 H 0.08 2.86 5.72 -2.39 -0.01 2.85 16 37 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 38 H 0.05 2.50 5.83 -2.39 -0.01 2.48 16 39 H 0.00 0.16 8.03 -2.39 -0.02 0.14 16 40 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.28 6.85 8.06 -2.91 -0.02 6.83 16 42 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.10 2.73 6.41 -2.38 -0.02 2.72 16 Total: -1.00 -65.66 342.81 5.68 -59.98 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.00 Total: 15.65 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.46 Total: 8.93 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -3.76 Total: -101.65 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.04 Total: -28.90 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -65.66 5.68 -59.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264138804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.253 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds