Wall clock time and date at job start Tue Mar 31 2020 06:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46884 * 2 1 4 4 O 1.34255 * 126.52744 * 270.18699 * 3 2 1 5 5 C 1.34045 * 108.22823 * 180.26416 * 4 3 2 6 6 N 1.29936 * 109.24237 * 359.73566 * 5 4 3 7 7 C 1.36071 * 108.47707 * 359.97438 * 6 5 4 8 8 C 1.47421 * 126.44663 * 180.02562 * 7 6 5 9 9 O 1.21618 * 119.99243 * 185.70118 * 8 7 6 10 10 N 1.34776 * 120.00178 * 5.69706 * 8 7 6 11 11 C 1.46497 * 120.00055 * 5.21261 * 10 8 7 12 12 C 1.50693 * 109.47310 * 275.43424 * 11 10 8 13 13 H 1.07997 * 120.00061 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00054 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99981 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00145 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47115 * 60.00140 * 16 14 12 18 18 H 1.48497 * 109.47440 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47282 * 300.00236 * 16 14 12 20 20 C 1.46502 * 119.99788 * 185.21615 * 10 8 7 21 21 C 1.53002 * 109.46739 * 270.00093 * 20 10 8 22 22 C 1.53004 * 109.47091 * 180.02562 * 21 20 10 23 23 C 1.52999 * 109.46935 * 64.99431 * 22 21 20 24 24 C 1.52994 * 109.47438 * 184.99963 * 22 21 20 25 25 H 1.09003 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46917 * 299.99598 * 1 2 3 27 27 H 1.09004 * 109.47627 * 59.99825 * 1 2 3 28 28 H 1.09001 * 109.46917 * 240.00402 * 2 1 3 29 29 H 1.08996 * 109.47041 * 120.00230 * 2 1 3 30 30 H 1.08001 * 125.38149 * 179.76780 * 5 4 3 31 31 H 1.08998 * 109.46875 * 35.43850 * 11 10 8 32 32 H 1.09003 * 109.46953 * 155.42933 * 11 10 8 33 33 H 0.97003 * 120.00288 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.47051 * 29.99571 * 20 10 8 35 35 H 1.08997 * 109.47092 * 149.99958 * 20 10 8 36 36 H 1.09002 * 109.46923 * 299.99557 * 21 20 10 37 37 H 1.08997 * 109.47438 * 60.00077 * 21 20 10 38 38 H 1.09004 * 109.47286 * 305.00049 * 22 21 20 39 39 H 1.09003 * 109.47111 * 60.00426 * 23 22 21 40 40 H 1.09003 * 109.47169 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47727 * 300.00189 * 23 22 21 42 42 H 1.08999 * 109.47302 * 59.99505 * 24 22 21 43 43 H 1.09003 * 109.47187 * 180.02562 * 24 22 21 44 44 H 1.09003 * 109.46882 * 299.99742 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2953 2.1754 -1.0788 5 6 2.7263 3.3729 -0.6580 6 7 2.7355 3.3923 0.6412 7 6 2.3017 2.1846 1.0937 8 6 2.1572 1.7779 2.5033 9 8 1.8566 0.6318 2.7776 10 7 2.3584 2.6760 3.4878 11 6 2.6079 4.0813 3.1576 12 6 4.0733 4.2760 2.8650 13 1 4.7509 3.4368 2.9191 14 6 4.5489 5.5255 2.5282 15 7 3.7238 6.5476 2.4628 16 14 6.3653 5.7668 2.1647 17 1 6.7580 4.9118 1.0158 18 1 6.6182 7.1913 1.8301 19 1 7.1635 5.3889 3.3586 20 6 2.3275 2.2469 4.8882 21 6 0.8993 2.3607 5.4251 22 6 0.8671 1.9132 6.8879 23 6 1.6965 2.8800 7.7353 24 6 -0.5788 1.9080 7.3880 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.0191 4.1924 -1.2977 31 1 2.0224 4.3580 2.2809 32 1 2.3191 4.7093 4.0004 33 1 4.0584 7.4266 2.2255 34 1 2.6605 1.2113 4.9583 35 1 2.9889 2.8819 5.4775 36 1 0.5663 3.3963 5.3550 37 1 0.2379 1.7256 4.8358 38 1 1.2836 0.9091 6.9699 39 1 1.2802 3.8840 7.6534 40 1 1.6740 2.5609 8.7774 41 1 2.7266 2.8837 7.3791 42 1 -1.1696 1.2192 6.7842 43 1 -0.6016 1.5895 8.4302 44 1 -0.9951 2.9120 7.3060 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265744698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:36 Heat of formation + Delta-G solvation = -25.653997 kcal Electronic energy + Delta-G solvation = -24837.803628 eV Core-core repulsion = 21370.797837 eV Total energy + Delta-G solvation = -3467.005791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.77959 -38.96655 -36.54907 -34.89315 -33.95636 -33.69480 -32.32200 -29.47131 -28.50183 -27.02515 -26.72245 -24.51417 -23.24532 -22.95198 -22.14756 -20.68634 -19.70878 -18.79280 -16.86119 -16.39235 -16.12462 -15.72163 -15.40325 -14.91199 -14.56339 -14.37730 -14.12554 -14.05178 -13.61367 -13.33628 -13.04062 -12.49673 -12.41628 -12.35996 -12.15449 -12.03674 -11.65791 -11.57964 -11.41586 -11.06386 -10.94860 -10.82101 -10.72935 -10.70655 -10.45655 -10.39871 -10.16414 -10.03037 -9.59917 -9.40114 -9.08262 -8.36994 -8.28800 -7.58370 -5.92975 -3.91772 1.68015 2.86834 3.12854 3.34013 3.38207 3.41924 3.91140 4.08750 4.50703 4.75937 5.03539 5.08828 5.13185 5.17666 5.24167 5.39053 5.43255 5.51173 5.61640 5.69981 5.75665 5.87554 5.90095 5.93016 6.00870 6.02782 6.04158 6.14166 6.20263 6.28532 6.34988 6.38352 6.42647 6.46898 6.63957 6.71324 6.76183 6.91905 7.52852 7.74764 7.97614 8.24214 8.35001 8.41542 8.96452 9.09095 9.68326 11.15931 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.007527 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.926494 B = 3719.263814 C = 6234.363289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C 0.012 3.988 4 O -0.212 6.212 5 C 0.139 3.861 6 N -0.381 5.381 7 C -0.054 4.054 8 C 0.596 3.404 9 O -0.571 6.571 10 N -0.579 5.579 11 C 0.239 3.761 12 C -0.493 4.493 13 H 0.049 0.951 14 C 0.070 3.930 15 N -0.895 5.895 16 Si 0.886 3.114 17 H -0.280 1.280 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.120 3.880 21 C -0.127 4.127 22 C -0.093 4.093 23 C -0.150 4.150 24 C -0.144 4.144 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.245 0.755 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -8.603 -0.151 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.044 4.044 4 O -0.100 6.100 5 C -0.089 4.089 6 N -0.108 5.108 7 C -0.175 4.175 8 C 0.384 3.616 9 O -0.454 6.454 10 N -0.307 5.307 11 C 0.120 3.880 12 C -0.532 4.532 13 H 0.067 0.933 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.714 3.286 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.206 1.206 20 C -0.003 4.003 21 C -0.166 4.166 22 C -0.112 4.112 23 C -0.207 4.207 24 C -0.202 4.202 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.133 0.867 30 H 0.261 0.739 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.410 -8.411 0.340 10.580 hybrid contribution 1.140 0.170 -0.841 1.426 sum -5.270 -8.241 -0.501 9.795 Atomic orbital electron populations 1.21684 0.93839 1.02113 1.02272 1.20230 0.96509 0.86203 1.04744 1.23563 1.01414 0.95390 0.84044 1.84283 1.64368 1.24829 1.36481 1.28269 1.01475 0.86720 0.92421 1.71710 1.12098 1.19232 1.07755 1.21573 1.08805 0.91695 0.95395 1.16803 0.77231 0.84445 0.83168 1.90650 1.51693 1.19408 1.83611 1.48163 1.66336 1.11707 1.04475 1.19682 0.97526 0.73600 0.97200 1.21119 0.92669 0.93958 1.45467 0.93309 1.24707 0.96885 0.95882 0.95615 1.69912 1.34160 1.00062 1.49336 0.86780 0.86329 0.76759 0.78722 1.20600 1.21433 1.20611 1.21412 0.96300 1.00582 0.81983 1.21991 0.98064 1.01756 0.94757 1.21045 0.95723 0.99531 0.94911 1.21906 1.00507 0.99409 0.98879 1.21819 0.96352 1.01677 1.00330 0.91690 0.91921 0.92905 0.90611 0.86749 0.73949 0.92231 0.95481 0.93135 0.91234 0.90206 0.91787 0.91907 0.91348 0.92591 0.93272 0.92103 0.92918 0.93099 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.44 16 2 C -0.04 -0.57 5.99 -27.88 -0.17 -0.74 16 3 C 0.01 0.22 6.69 -35.08 -0.23 -0.01 16 4 O -0.21 -3.60 10.73 6.53 0.07 -3.53 16 5 C 0.14 2.46 13.19 51.96 0.69 3.15 16 6 N -0.38 -8.40 6.86 -11.48 -0.08 -8.48 16 7 C -0.05 -1.15 6.55 -83.02 -0.54 -1.69 16 8 C 0.60 13.15 7.61 -12.52 -0.10 13.06 16 9 O -0.57 -12.43 14.41 5.26 0.08 -12.36 16 10 N -0.58 -12.80 2.47 -176.33 -0.44 -13.24 16 11 C 0.24 5.97 4.75 -5.20 -0.02 5.95 16 12 C -0.49 -13.27 7.67 -34.44 -0.26 -13.53 16 13 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 14 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 15 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.12 2.26 5.10 -4.04 -0.02 2.24 16 21 C -0.13 -2.05 5.01 -26.73 -0.13 -2.19 16 22 C -0.09 -1.23 2.92 -90.62 -0.26 -1.49 16 23 C -0.15 -1.89 8.95 37.16 0.33 -1.56 16 24 C -0.14 -1.67 9.19 37.15 0.34 -1.32 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.11 1.80 6.39 -51.93 -0.33 1.47 16 30 H 0.24 3.24 8.06 -52.49 -0.42 2.81 16 31 H 0.06 1.59 5.90 -51.93 -0.31 1.29 16 32 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.07 1.29 7.50 -51.93 -0.39 0.90 16 35 H 0.08 1.49 6.49 -51.93 -0.34 1.15 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -30.66 360.34 -6.50 -37.17 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.16 Total: 0.92 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.12 Total: 2.22 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.22 Total: -46.16 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.15 Total: -15.89 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.66 -6.50 -37.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265744698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.513 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds