Wall clock time and date at job start Tue Mar 31 2020 06:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46884 * 2 1 4 4 O 1.34255 * 126.52744 * 270.18699 * 3 2 1 5 5 C 1.34045 * 108.22823 * 180.26416 * 4 3 2 6 6 N 1.29936 * 109.24237 * 359.73566 * 5 4 3 7 7 C 1.36071 * 108.47707 * 359.97438 * 6 5 4 8 8 C 1.47421 * 126.44663 * 180.02562 * 7 6 5 9 9 O 1.21618 * 119.99243 * 185.70118 * 8 7 6 10 10 N 1.34776 * 120.00178 * 5.69706 * 8 7 6 11 11 C 1.46497 * 120.00055 * 5.21261 * 10 8 7 12 12 C 1.50693 * 109.47310 * 275.43424 * 11 10 8 13 13 H 1.07997 * 120.00061 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00054 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99981 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00145 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47115 * 60.00140 * 16 14 12 18 18 H 1.48497 * 109.47440 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47282 * 300.00236 * 16 14 12 20 20 C 1.46502 * 119.99788 * 185.21615 * 10 8 7 21 21 C 1.53002 * 109.46739 * 270.00093 * 20 10 8 22 22 C 1.53004 * 109.47091 * 180.02562 * 21 20 10 23 23 C 1.52999 * 109.46935 * 64.99431 * 22 21 20 24 24 C 1.52994 * 109.47438 * 184.99963 * 22 21 20 25 25 H 1.09003 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46917 * 299.99598 * 1 2 3 27 27 H 1.09004 * 109.47627 * 59.99825 * 1 2 3 28 28 H 1.09001 * 109.46917 * 240.00402 * 2 1 3 29 29 H 1.08996 * 109.47041 * 120.00230 * 2 1 3 30 30 H 1.08001 * 125.38149 * 179.76780 * 5 4 3 31 31 H 1.08998 * 109.46875 * 35.43850 * 11 10 8 32 32 H 1.09003 * 109.46953 * 155.42933 * 11 10 8 33 33 H 0.97003 * 120.00288 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.47051 * 29.99571 * 20 10 8 35 35 H 1.08997 * 109.47092 * 149.99958 * 20 10 8 36 36 H 1.09002 * 109.46923 * 299.99557 * 21 20 10 37 37 H 1.08997 * 109.47438 * 60.00077 * 21 20 10 38 38 H 1.09004 * 109.47286 * 305.00049 * 22 21 20 39 39 H 1.09003 * 109.47111 * 60.00426 * 23 22 21 40 40 H 1.09003 * 109.47169 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47727 * 300.00189 * 23 22 21 42 42 H 1.08999 * 109.47302 * 59.99505 * 24 22 21 43 43 H 1.09003 * 109.47187 * 180.02562 * 24 22 21 44 44 H 1.09003 * 109.46882 * 299.99742 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2953 2.1754 -1.0788 5 6 2.7263 3.3729 -0.6580 6 7 2.7355 3.3923 0.6412 7 6 2.3017 2.1846 1.0937 8 6 2.1572 1.7779 2.5033 9 8 1.8566 0.6318 2.7776 10 7 2.3584 2.6760 3.4878 11 6 2.6079 4.0813 3.1576 12 6 4.0733 4.2760 2.8650 13 1 4.7509 3.4368 2.9191 14 6 4.5489 5.5255 2.5282 15 7 3.7238 6.5476 2.4628 16 14 6.3653 5.7668 2.1647 17 1 6.7580 4.9118 1.0158 18 1 6.6182 7.1913 1.8301 19 1 7.1635 5.3889 3.3586 20 6 2.3275 2.2469 4.8882 21 6 0.8993 2.3607 5.4251 22 6 0.8671 1.9132 6.8879 23 6 1.6965 2.8800 7.7353 24 6 -0.5788 1.9080 7.3880 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.0191 4.1924 -1.2977 31 1 2.0224 4.3580 2.2809 32 1 2.3191 4.7093 4.0004 33 1 4.0584 7.4266 2.2255 34 1 2.6605 1.2113 4.9583 35 1 2.9889 2.8819 5.4775 36 1 0.5663 3.3963 5.3550 37 1 0.2379 1.7256 4.8358 38 1 1.2836 0.9091 6.9699 39 1 1.2802 3.8840 7.6534 40 1 1.6740 2.5609 8.7774 41 1 2.7266 2.8837 7.3791 42 1 -1.1696 1.2192 6.7842 43 1 -0.6016 1.5895 8.4302 44 1 -0.9951 2.9120 7.3060 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265744698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:35 Heat of formation + Delta-G solvation = -43.317644 kcal Electronic energy + Delta-G solvation = -24838.569581 eV Core-core repulsion = 21370.797837 eV Total energy + Delta-G solvation = -3467.771744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.22661 -40.63341 -37.87428 -36.51252 -35.43144 -34.98113 -34.31354 -30.93679 -29.94365 -28.65372 -27.97915 -25.90543 -24.88765 -24.51672 -23.67482 -22.06828 -20.87567 -20.37650 -18.64661 -18.20767 -17.66806 -17.31524 -16.95038 -16.34478 -16.11490 -15.80336 -15.66768 -15.35977 -14.86423 -14.62704 -14.34735 -14.24738 -14.03131 -13.70324 -13.57549 -13.33248 -13.13461 -12.87983 -12.69822 -12.68729 -12.56539 -12.23943 -12.13073 -12.06659 -12.01989 -11.82270 -11.58727 -11.53476 -11.40496 -11.09463 -10.72179 -10.37284 -9.85671 -9.34428 -8.01917 -6.07363 0.21468 1.33463 1.42100 1.42769 1.50096 1.75390 2.28049 2.43904 2.53111 3.29534 3.37531 3.70460 3.83356 3.93062 4.00162 4.08811 4.17992 4.29181 4.33621 4.44423 4.56789 4.67000 4.70355 4.78196 4.83599 4.90636 4.94213 4.95129 4.98963 5.04664 5.13662 5.15556 5.22309 5.26644 5.29109 5.32130 5.48174 5.51616 5.53170 5.83257 5.92384 6.27363 6.54240 6.78835 6.97172 7.29820 7.56325 9.06006 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.007527 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.926494 B = 3719.263814 C = 6234.363289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.040 4.040 3 C 0.032 3.968 4 O -0.200 6.200 5 C 0.154 3.846 6 N -0.436 5.436 7 C -0.099 4.099 8 C 0.589 3.411 9 O -0.575 6.575 10 N -0.588 5.588 11 C 0.261 3.739 12 C -0.494 4.494 13 H 0.031 0.969 14 C 0.033 3.967 15 N -0.920 5.920 16 Si 0.941 3.059 17 H -0.279 1.279 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.119 3.881 21 C -0.115 4.115 22 C -0.089 4.089 23 C -0.148 4.148 24 C -0.141 4.141 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.282 0.718 31 H 0.043 0.957 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -9.610 -0.829 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 C -0.025 4.025 4 O -0.087 6.087 5 C -0.075 4.075 6 N -0.162 5.162 7 C -0.218 4.218 8 C 0.378 3.622 9 O -0.458 6.458 10 N -0.317 5.317 11 C 0.141 3.859 12 C -0.533 4.533 13 H 0.050 0.950 14 C -0.166 4.166 15 N -0.561 5.561 16 Si 0.768 3.232 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.003 4.003 21 C -0.153 4.153 22 C -0.108 4.108 23 C -0.205 4.205 24 C -0.198 4.198 25 H 0.112 0.888 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.298 0.702 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.418 -9.436 -0.319 11.416 hybrid contribution 1.118 0.435 -0.692 1.385 sum -5.299 -9.001 -1.011 10.494 Atomic orbital electron populations 1.21657 0.92333 1.03785 1.01510 1.20413 0.97621 0.84010 1.05636 1.24147 0.98892 0.96229 0.83252 1.84326 1.64001 1.24597 1.35798 1.29014 0.99364 0.87324 0.91767 1.71574 1.14319 1.20338 1.09999 1.21613 1.11809 0.92716 0.95682 1.17052 0.76920 0.84399 0.83818 1.90621 1.51997 1.19254 1.83965 1.48168 1.66835 1.10759 1.05899 1.19203 0.96348 0.74910 0.95471 1.21124 0.93181 0.93517 1.45504 0.95050 1.25279 1.00358 0.95543 0.95388 1.70007 1.35717 1.00363 1.49975 0.85896 0.81986 0.76883 0.78410 1.20444 1.20633 1.20493 1.21553 0.97985 1.00238 0.80573 1.21873 0.95853 1.00801 0.96816 1.21034 0.97314 0.99777 0.92659 1.21889 0.99540 0.99024 1.00064 1.21787 0.94783 1.01747 1.01492 0.88831 0.94465 0.91829 0.87297 0.88152 0.70238 0.93889 0.97516 0.93006 0.91189 0.90586 0.93058 0.92977 0.90745 0.93187 0.90990 0.93279 0.92834 0.91052 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.89 71.98 0.71 -2.47 16 2 C -0.04 -1.07 5.99 29.85 0.18 -0.89 16 3 C 0.03 1.13 6.69 25.19 0.17 1.30 16 4 O -0.20 -6.43 10.73 0.44 0.00 -6.42 16 5 C 0.15 5.25 13.19 130.52 1.72 6.98 16 6 N -0.44 -19.38 6.86 -305.15 -2.09 -21.48 16 7 C -0.10 -4.26 6.55 40.41 0.26 -4.00 16 8 C 0.59 26.77 7.61 86.66 0.66 27.43 16 9 O -0.58 -25.51 14.41 -4.09 -0.06 -25.56 16 10 N -0.59 -27.07 2.47 -830.04 -2.05 -29.12 16 11 C 0.26 13.58 4.75 85.63 0.41 13.99 16 12 C -0.49 -27.24 7.67 25.60 0.20 -27.05 16 13 H 0.03 1.81 7.81 -2.91 -0.02 1.78 16 14 C 0.03 1.81 5.46 84.65 0.46 2.28 16 15 N -0.92 -52.29 13.29 21.45 0.28 -52.01 16 16 Si 0.94 43.77 29.54 68.60 2.03 45.79 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 C 0.12 4.61 5.10 86.38 0.44 5.05 16 21 C -0.11 -3.81 5.01 30.60 0.15 -3.65 16 22 C -0.09 -2.28 2.92 -10.79 -0.03 -2.31 16 23 C -0.15 -3.64 8.95 71.98 0.64 -3.00 16 24 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.10 3.06 6.39 -2.39 -0.02 3.04 16 30 H 0.28 6.85 8.06 -2.91 -0.02 6.82 16 31 H 0.04 2.40 5.90 -2.39 -0.01 2.39 16 32 H 0.01 0.38 8.03 -2.39 -0.02 0.36 16 33 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 34 H 0.07 2.68 7.50 -2.39 -0.02 2.66 16 35 H 0.08 2.96 6.49 -2.39 -0.02 2.95 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.31 6.56 -2.39 -0.02 1.29 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -66.99 360.34 5.72 -61.27 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.97 Total: 16.27 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.64 Total: 11.26 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.86 Total: -102.61 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.99 5.72 -61.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265744698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.950 kcal (2) G-P(sol) polarization free energy of solvation -66.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds