Wall clock time and date at job start Tue Mar 31 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46974 * 2 1 4 4 O 1.34257 * 126.52929 * 270.18634 * 3 2 1 5 5 C 1.34046 * 108.22998 * 180.26784 * 4 3 2 6 6 N 1.29936 * 109.24454 * 359.73185 * 5 4 3 7 7 C 1.36063 * 108.47427 * 359.97438 * 6 5 4 8 8 C 1.47421 * 126.44771 * 179.97438 * 7 6 5 9 9 O 1.21620 * 120.00028 * 173.37901 * 8 7 6 10 10 N 1.34775 * 119.99974 * 353.37837 * 8 7 6 11 11 C 1.46503 * 119.99939 * 183.58350 * 10 8 7 12 12 C 1.50704 * 109.46856 * 270.00019 * 11 10 8 13 13 H 1.07990 * 120.00120 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99697 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00235 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99661 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47338 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47308 * 119.99776 * 16 14 12 19 19 H 1.48501 * 109.46897 * 239.99329 * 16 14 12 20 20 C 1.46496 * 120.00088 * 3.58049 * 10 8 7 21 21 C 1.53001 * 109.47328 * 267.72639 * 20 10 8 22 22 C 1.53005 * 109.47060 * 54.15340 * 21 20 10 23 23 C 1.52997 * 109.47266 * 174.15694 * 21 20 10 24 24 C 1.53007 * 109.46878 * 294.15803 * 21 20 10 25 25 H 1.09000 * 109.46802 * 60.00102 * 1 2 3 26 26 H 1.09004 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47079 * 300.00054 * 1 2 3 28 28 H 1.09000 * 109.47079 * 239.99946 * 2 1 3 29 29 H 1.09000 * 109.46802 * 119.99898 * 2 1 3 30 30 H 1.08005 * 125.37840 * 179.76901 * 5 4 3 31 31 H 1.09002 * 109.47527 * 29.99623 * 11 10 8 32 32 H 1.09000 * 109.47167 * 149.99729 * 11 10 8 33 33 H 0.96998 * 120.00171 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.46863 * 27.72635 * 20 10 8 35 35 H 1.08996 * 109.47024 * 147.72718 * 20 10 8 36 36 H 1.08994 * 109.46763 * 68.29740 * 22 21 20 37 37 H 1.09004 * 109.47027 * 188.29712 * 22 21 20 38 38 H 1.09002 * 109.47027 * 308.29588 * 22 21 20 39 39 H 1.08994 * 109.47201 * 60.00038 * 23 21 20 40 40 H 1.09005 * 109.46923 * 179.97438 * 23 21 20 41 41 H 1.08996 * 109.47096 * 299.99714 * 23 21 20 42 42 H 1.08997 * 109.47077 * 59.99906 * 24 21 20 43 43 H 1.09008 * 109.46852 * 180.02562 * 24 21 20 44 44 H 1.09004 * 109.46996 * 299.99646 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2954 2.1754 -1.0788 5 6 2.7265 3.3728 -0.6580 6 7 2.7357 3.3924 0.6412 7 6 2.3018 2.1847 1.0936 8 6 2.1582 1.7776 2.5032 9 8 1.6452 0.7098 2.7785 10 7 2.5954 2.5887 3.4868 11 6 2.5246 2.1509 4.8830 12 6 1.2014 2.5659 5.4731 13 1 0.4852 3.1024 4.8687 14 6 0.9058 2.2614 6.7849 15 7 1.7782 1.6085 7.5211 16 14 -0.7340 2.7765 7.5165 17 1 -1.5311 3.4933 6.4891 18 1 -1.4755 1.5713 7.9670 19 1 -0.4986 3.6747 8.6754 20 6 3.1415 3.9081 3.1597 21 6 4.6583 3.8042 2.9885 22 6 4.9823 2.7194 1.9592 23 6 5.2103 5.1469 2.5053 24 6 5.2993 3.4422 4.3298 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0193 4.1923 -1.2977 31 1 2.6185 1.0659 4.9289 32 1 3.3350 2.6099 5.4493 33 1 1.5701 1.3940 8.4439 34 1 2.6949 4.2664 2.2322 35 1 2.9138 4.6056 3.9657 36 1 4.6540 3.0454 0.9723 37 1 6.0577 2.5423 1.9443 38 1 4.4659 1.7978 2.2279 39 1 4.9795 5.9196 3.2385 40 1 6.2910 5.0729 2.3838 41 1 4.7537 5.4047 1.5498 42 1 4.9061 2.4857 4.6740 43 1 6.3800 3.3686 4.2080 44 1 5.0685 4.2150 5.0631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265783386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:39 Heat of formation + Delta-G solvation = -7.597235 kcal Electronic energy + Delta-G solvation = -25652.993123 eV Core-core repulsion = 22186.770332 eV Total energy + Delta-G solvation = -3466.222791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.34509 -39.24363 -36.92679 -34.67629 -34.17024 -33.57614 -32.25625 -29.25137 -27.78782 -26.91640 -26.67045 -25.45444 -24.35564 -23.43503 -22.36054 -21.01729 -19.31261 -18.57814 -16.85407 -16.75329 -16.35789 -15.90533 -15.42970 -14.85378 -14.71979 -14.32280 -14.21859 -13.79896 -13.52718 -13.32926 -13.15496 -12.59284 -12.49195 -12.29394 -12.04502 -11.89453 -11.63879 -11.50268 -11.38629 -11.19812 -10.99687 -10.90958 -10.77995 -10.70695 -10.38376 -10.33380 -10.15930 -10.07405 -9.62839 -9.40362 -9.03974 -8.71667 -8.37483 -7.49610 -5.99514 -4.03168 1.36460 2.32206 2.70699 3.32615 3.39911 3.44698 3.86924 3.97768 4.25715 4.49796 4.77368 5.01429 5.18174 5.29350 5.30741 5.32496 5.34738 5.42259 5.54142 5.65663 5.91877 5.92895 5.94575 5.95541 5.99758 6.09618 6.19537 6.23041 6.26674 6.30533 6.34971 6.41847 6.46602 6.62277 6.76067 6.83008 6.95448 7.19341 7.47529 7.60968 7.67994 7.97667 8.29682 8.50123 8.93525 9.11465 9.61241 11.08314 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.006465 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.701178 B = 4329.751886 C = 5709.518360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C 0.026 3.974 4 O -0.204 6.204 5 C 0.151 3.849 6 N -0.443 5.443 7 C -0.051 4.051 8 C 0.584 3.416 9 O -0.537 6.537 10 N -0.572 5.572 11 C 0.241 3.759 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.102 3.898 21 C -0.074 4.074 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.147 4.147 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.248 0.752 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.262 0.738 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.041 0.959 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 3.565 -16.941 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.029 4.029 4 O -0.091 6.091 5 C -0.077 4.077 6 N -0.173 5.173 7 C -0.171 4.171 8 C 0.370 3.630 9 O -0.415 6.415 10 N -0.300 5.300 11 C 0.122 3.878 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.022 4.022 21 C -0.075 4.075 22 C -0.196 4.196 23 C -0.189 4.189 24 C -0.204 4.204 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.264 0.736 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.889 3.440 -16.212 17.278 hybrid contribution -0.881 0.069 0.093 0.889 sum 4.008 3.509 -16.118 16.976 Atomic orbital electron populations 1.21696 0.93269 1.02640 1.02491 1.20282 0.97068 0.85595 1.04820 1.23717 1.00225 0.95676 0.83311 1.84311 1.64014 1.24279 1.36465 1.28072 1.00339 0.87314 0.91927 1.70945 1.16241 1.21290 1.08855 1.21927 1.07907 0.90781 0.96499 1.16746 0.79535 0.84655 0.82106 1.90761 1.44730 1.23368 1.82641 1.47993 1.57995 1.15776 1.08254 1.19484 0.97371 0.96763 0.74147 1.21485 1.01840 1.36369 0.96322 0.92473 1.24907 0.97077 0.95142 0.96943 1.69937 1.34943 1.40201 1.08412 0.86475 0.83941 0.78284 0.78929 1.19851 1.20932 1.21024 1.22133 0.92016 0.84894 1.03206 1.20768 0.96308 0.95151 0.95255 1.22112 0.99526 0.98647 0.99273 1.21728 0.99825 0.96398 1.00901 1.22059 0.98980 1.02836 0.96489 0.93072 0.91370 0.91221 0.90404 0.86668 0.73643 0.94184 0.93761 0.92864 0.86868 0.91235 0.91924 0.94286 0.93166 0.92992 0.93443 0.92564 0.91358 0.93954 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.04 -0.54 5.86 -27.88 -0.16 -0.70 16 3 C 0.03 0.39 6.69 -35.08 -0.23 0.16 16 4 O -0.20 -2.55 10.73 6.52 0.07 -2.48 16 5 C 0.15 1.63 12.82 51.96 0.67 2.30 16 6 N -0.44 -6.44 5.19 -11.48 -0.06 -6.50 16 7 C -0.05 -0.89 5.08 -83.02 -0.42 -1.31 16 8 C 0.58 12.70 6.15 -12.52 -0.08 12.63 16 9 O -0.54 -13.14 14.52 5.26 0.08 -13.07 16 10 N -0.57 -12.66 1.95 -176.33 -0.34 -13.00 16 11 C 0.24 6.34 4.25 -5.19 -0.02 6.32 16 12 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 16 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 C 0.10 1.88 4.40 -4.04 -0.02 1.86 16 21 C -0.07 -1.17 0.81 -154.50 -0.13 -1.29 16 22 C -0.14 -2.17 6.88 37.16 0.26 -1.91 16 23 C -0.13 -1.68 8.47 37.16 0.31 -1.36 16 24 C -0.15 -2.48 7.46 37.16 0.28 -2.20 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.12 1.76 6.65 -51.93 -0.35 1.42 16 30 H 0.25 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.04 1.18 7.47 -51.93 -0.39 0.79 16 32 H 0.04 1.17 5.70 -51.93 -0.30 0.87 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.11 1.98 4.79 -51.95 -0.25 1.74 16 35 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 36 H 0.06 0.91 5.17 -51.93 -0.27 0.64 16 37 H 0.04 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.05 0.92 5.54 -51.93 -0.29 0.63 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.35 5.70 -51.93 -0.30 1.05 16 43 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -32.78 344.83 -5.69 -38.47 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.74 Total: 0.84 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 0.40 Total: -0.65 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.33 Total: -45.48 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.15 Total: -15.55 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.78 -5.69 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265783386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.874 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds