Wall clock time and date at job start Tue Mar 31 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46974 * 2 1 4 4 O 1.34257 * 126.52929 * 270.18634 * 3 2 1 5 5 C 1.34046 * 108.22998 * 180.26784 * 4 3 2 6 6 N 1.29936 * 109.24454 * 359.73185 * 5 4 3 7 7 C 1.36063 * 108.47427 * 359.97438 * 6 5 4 8 8 C 1.47421 * 126.44771 * 179.97438 * 7 6 5 9 9 O 1.21620 * 120.00028 * 173.37901 * 8 7 6 10 10 N 1.34775 * 119.99974 * 353.37837 * 8 7 6 11 11 C 1.46503 * 119.99939 * 183.58350 * 10 8 7 12 12 C 1.50704 * 109.46856 * 270.00019 * 11 10 8 13 13 H 1.07990 * 120.00120 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99697 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00235 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99661 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47338 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47308 * 119.99776 * 16 14 12 19 19 H 1.48501 * 109.46897 * 239.99329 * 16 14 12 20 20 C 1.46496 * 120.00088 * 3.58049 * 10 8 7 21 21 C 1.53001 * 109.47328 * 267.72639 * 20 10 8 22 22 C 1.53005 * 109.47060 * 54.15340 * 21 20 10 23 23 C 1.52997 * 109.47266 * 174.15694 * 21 20 10 24 24 C 1.53007 * 109.46878 * 294.15803 * 21 20 10 25 25 H 1.09000 * 109.46802 * 60.00102 * 1 2 3 26 26 H 1.09004 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47079 * 300.00054 * 1 2 3 28 28 H 1.09000 * 109.47079 * 239.99946 * 2 1 3 29 29 H 1.09000 * 109.46802 * 119.99898 * 2 1 3 30 30 H 1.08005 * 125.37840 * 179.76901 * 5 4 3 31 31 H 1.09002 * 109.47527 * 29.99623 * 11 10 8 32 32 H 1.09000 * 109.47167 * 149.99729 * 11 10 8 33 33 H 0.96998 * 120.00171 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.46863 * 27.72635 * 20 10 8 35 35 H 1.08996 * 109.47024 * 147.72718 * 20 10 8 36 36 H 1.08994 * 109.46763 * 68.29740 * 22 21 20 37 37 H 1.09004 * 109.47027 * 188.29712 * 22 21 20 38 38 H 1.09002 * 109.47027 * 308.29588 * 22 21 20 39 39 H 1.08994 * 109.47201 * 60.00038 * 23 21 20 40 40 H 1.09005 * 109.46923 * 179.97438 * 23 21 20 41 41 H 1.08996 * 109.47096 * 299.99714 * 23 21 20 42 42 H 1.08997 * 109.47077 * 59.99906 * 24 21 20 43 43 H 1.09008 * 109.46852 * 180.02562 * 24 21 20 44 44 H 1.09004 * 109.46996 * 299.99646 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2954 2.1754 -1.0788 5 6 2.7265 3.3728 -0.6580 6 7 2.7357 3.3924 0.6412 7 6 2.3018 2.1847 1.0936 8 6 2.1582 1.7776 2.5032 9 8 1.6452 0.7098 2.7785 10 7 2.5954 2.5887 3.4868 11 6 2.5246 2.1509 4.8830 12 6 1.2014 2.5659 5.4731 13 1 0.4852 3.1024 4.8687 14 6 0.9058 2.2614 6.7849 15 7 1.7782 1.6085 7.5211 16 14 -0.7340 2.7765 7.5165 17 1 -1.5311 3.4933 6.4891 18 1 -1.4755 1.5713 7.9670 19 1 -0.4986 3.6747 8.6754 20 6 3.1415 3.9081 3.1597 21 6 4.6583 3.8042 2.9885 22 6 4.9823 2.7194 1.9592 23 6 5.2103 5.1469 2.5053 24 6 5.2993 3.4422 4.3298 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0193 4.1923 -1.2977 31 1 2.6185 1.0659 4.9289 32 1 3.3350 2.6099 5.4493 33 1 1.5701 1.3940 8.4439 34 1 2.6949 4.2664 2.2322 35 1 2.9138 4.6056 3.9657 36 1 4.6540 3.0454 0.9723 37 1 6.0577 2.5423 1.9443 38 1 4.4659 1.7978 2.2279 39 1 4.9795 5.9196 3.2385 40 1 6.2910 5.0729 2.3838 41 1 4.7537 5.4047 1.5498 42 1 4.9061 2.4857 4.6740 43 1 6.3800 3.3686 4.2080 44 1 5.0685 4.2150 5.0631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265783386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:39 Heat of formation + Delta-G solvation = -28.543078 kcal Electronic energy + Delta-G solvation = -25653.901403 eV Core-core repulsion = 22186.770332 eV Total energy + Delta-G solvation = -3467.131071 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.43564 -40.85090 -38.43613 -35.92445 -35.63538 -34.97968 -34.25342 -30.59832 -29.54321 -28.15783 -28.05382 -26.95369 -25.95047 -24.65088 -23.84965 -22.28699 -20.75102 -19.86767 -18.74983 -18.13946 -17.75485 -17.36101 -16.99892 -16.46153 -16.14592 -15.74764 -15.48123 -15.18274 -14.88711 -14.73830 -14.40529 -14.34685 -14.08447 -13.60098 -13.56837 -13.18885 -13.12650 -12.86774 -12.81816 -12.72662 -12.54870 -12.51303 -12.26743 -12.13017 -11.95916 -11.81322 -11.64735 -11.57947 -11.44832 -11.00595 -10.64320 -10.58160 -9.90018 -9.28814 -8.22155 -6.36860 0.18456 1.21265 1.33790 1.35720 1.48083 1.66138 2.27767 2.40755 2.45644 3.06026 3.21000 3.64332 3.80211 3.99176 4.01984 4.12395 4.20460 4.26934 4.33272 4.60246 4.64481 4.70417 4.78633 4.82592 4.83094 4.92841 4.96493 4.98473 5.04326 5.08664 5.14370 5.17088 5.22740 5.25383 5.27882 5.39391 5.47734 5.50521 5.62834 5.67186 5.92257 6.07876 6.52525 6.70785 6.82336 7.25515 7.43356 8.84364 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.006465 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.701178 B = 4329.751886 C = 5709.518360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C 0.037 3.963 4 O -0.193 6.193 5 C 0.189 3.811 6 N -0.472 5.472 7 C -0.080 4.080 8 C 0.576 3.424 9 O -0.581 6.581 10 N -0.579 5.579 11 C 0.263 3.737 12 C -0.542 4.542 13 H 0.046 0.954 14 C 0.010 3.990 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.268 1.268 20 C 0.101 3.899 21 C -0.069 4.069 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.029 0.971 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.308 0.692 31 H -0.006 1.006 32 H 0.037 0.963 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.013 0.987 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.065 0.935 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 5.595 -19.987 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.020 4.020 4 O -0.080 6.080 5 C -0.039 4.039 6 N -0.201 5.201 7 C -0.198 4.198 8 C 0.365 3.635 9 O -0.463 6.463 10 N -0.307 5.307 11 C 0.142 3.858 12 C -0.580 4.580 13 H 0.064 0.936 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.193 1.193 20 C -0.022 4.022 21 C -0.070 4.070 22 C -0.185 4.185 23 C -0.180 4.180 24 C -0.201 4.201 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.049 0.951 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.323 0.677 31 H 0.012 0.988 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.084 0.916 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.156 5.502 -19.262 20.685 hybrid contribution -0.913 -0.567 0.946 1.432 sum 4.243 4.935 -18.315 19.437 Atomic orbital electron populations 1.21647 0.92849 1.03532 1.01462 1.20312 0.97356 0.85164 1.05156 1.23794 0.98886 0.96037 0.83245 1.84371 1.63916 1.24675 1.35061 1.29378 0.96076 0.87235 0.91171 1.70736 1.18224 1.20202 1.10941 1.21210 1.11286 0.93030 0.94300 1.17338 0.78275 0.83888 0.84026 1.90714 1.46513 1.25132 1.83912 1.47946 1.58691 1.17340 1.06750 1.18900 0.96267 0.93737 0.76920 1.21713 1.02620 1.36790 0.96904 0.93595 1.25805 1.00950 0.94869 0.97244 1.70050 1.36898 1.40783 1.08890 0.85400 0.79076 0.78192 0.78338 1.19526 1.20394 1.19276 1.22364 0.94135 0.82577 1.03074 1.20757 0.94173 0.97429 0.94683 1.22018 0.99852 0.96830 0.99838 1.21661 1.00830 0.93862 1.01623 1.22013 1.00364 1.00443 0.97254 0.90971 0.89654 0.95122 0.86730 0.89582 0.67732 0.98811 0.94542 0.92378 0.85184 0.93087 0.90196 0.92943 0.96764 0.92838 0.91692 0.90768 0.95287 0.91639 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.89 71.98 0.71 -2.74 16 2 C -0.04 -1.11 5.86 29.85 0.18 -0.94 16 3 C 0.04 1.06 6.69 25.19 0.17 1.23 16 4 O -0.19 -4.06 10.73 0.42 0.00 -4.05 16 5 C 0.19 3.17 12.82 130.52 1.67 4.84 16 6 N -0.47 -12.56 5.19 -305.15 -1.58 -14.14 16 7 C -0.08 -2.79 5.08 40.41 0.21 -2.58 16 8 C 0.58 26.65 6.15 86.66 0.53 27.18 16 9 O -0.58 -30.94 14.52 -4.09 -0.06 -31.00 16 10 N -0.58 -27.36 1.95 -830.03 -1.62 -28.97 16 11 C 0.26 14.96 4.25 85.63 0.36 15.32 16 12 C -0.54 -32.92 9.39 25.60 0.24 -32.68 16 13 H 0.05 2.82 7.81 -2.92 -0.02 2.80 16 14 C 0.01 0.61 5.46 84.66 0.46 1.07 16 15 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 16 Si 0.97 46.60 29.54 68.60 2.03 48.63 16 17 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 C 0.10 3.82 4.40 86.38 0.38 4.20 16 21 C -0.07 -2.16 0.81 -52.18 -0.04 -2.20 16 22 C -0.13 -3.91 6.88 71.98 0.50 -3.41 16 23 C -0.12 -2.78 8.47 71.98 0.61 -2.17 16 24 C -0.14 -5.00 7.46 71.98 0.54 -4.47 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.80 6.65 -2.39 -0.02 2.78 16 30 H 0.31 0.94 8.06 -2.91 -0.02 0.92 16 31 H -0.01 -0.40 7.47 -2.39 -0.02 -0.42 16 32 H 0.04 2.10 5.70 -2.39 -0.01 2.09 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.13 4.49 4.79 -2.43 -0.01 4.48 16 35 H 0.05 2.07 8.09 -2.39 -0.02 2.05 16 36 H 0.08 2.12 5.17 -2.39 -0.01 2.11 16 37 H 0.05 1.42 8.13 -2.38 -0.02 1.40 16 38 H 0.01 0.51 5.54 -2.39 -0.01 0.50 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.03 1.21 5.70 -2.39 -0.01 1.20 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -78.34 344.83 6.56 -71.77 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.99 Total: 12.31 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.51 Total: 2.65 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -2.91 Total: -100.31 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.05 Total: -35.05 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -78.34 6.56 -71.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265783386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.230 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds