Wall clock time and date at job start Tue Mar 31 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 C 1.53002 * 109.47339 * 240.00033 * 2 1 3 5 5 C 1.50696 * 109.46856 * 59.99973 * 4 2 1 6 6 H 1.08001 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00138 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00401 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99580 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46997 * 90.00495 * 9 7 5 11 11 H 1.48501 * 109.47080 * 210.00206 * 9 7 5 12 12 H 1.48494 * 109.47338 * 330.00237 * 9 7 5 13 13 C 1.53008 * 109.47216 * 120.00246 * 2 1 3 14 14 N 1.46503 * 109.46840 * 299.99711 * 13 2 1 15 15 C 1.39977 * 119.99722 * 179.97438 * 14 13 2 16 16 C 1.39387 * 120.42594 * 179.97438 * 15 14 13 17 17 C 1.38343 * 118.42076 * 179.75238 * 16 15 14 18 18 C 1.38880 * 119.18871 * 0.51163 * 17 16 15 19 19 O 1.35788 * 119.60364 * 179.75605 * 18 17 16 20 20 C 1.42903 * 116.99784 * 179.72759 * 19 18 17 21 21 C 1.53000 * 109.46726 * 179.97438 * 20 19 18 22 22 O 1.42899 * 109.47405 * 64.99720 * 21 20 19 23 23 N 1.32190 * 120.79088 * 359.47275 * 18 17 16 24 24 C 1.31964 * 121.72170 * 0.28334 * 23 18 17 25 25 H 1.09009 * 109.47401 * 299.99991 * 1 2 3 26 26 H 1.08998 * 109.47285 * 59.99812 * 1 2 3 27 27 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47328 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47333 * 299.99817 * 3 2 1 30 30 H 1.09003 * 109.46991 * 60.00398 * 3 2 1 31 31 H 1.08997 * 109.47189 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.46874 * 300.00100 * 4 2 1 33 33 H 0.96998 * 119.99994 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46763 * 180.02562 * 13 2 1 35 35 H 1.08996 * 109.46857 * 59.99553 * 13 2 1 36 36 H 0.96999 * 119.99736 * 359.97438 * 14 13 2 37 37 H 1.08001 * 120.78682 * 0.02562 * 16 15 14 38 38 H 1.08006 * 120.40362 * 180.28467 * 17 16 15 39 39 H 1.09002 * 109.47382 * 59.99622 * 20 19 18 40 40 H 1.09001 * 109.46938 * 299.99609 * 20 19 18 41 41 H 1.09002 * 109.46642 * 184.99995 * 21 20 19 42 42 H 1.09002 * 109.47069 * 304.99524 * 21 20 19 43 43 H 0.96699 * 114.00112 * 180.02562 * 22 21 20 44 44 H 1.07997 * 119.63406 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4796 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 1.4323 0.1381 -4.8058 9 14 2.9443 -2.0009 -3.9033 10 1 2.0857 -3.2117 -3.9483 11 1 3.7358 -1.9086 -5.1564 12 1 3.8650 -2.0897 -2.7417 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8894 -0.5093 3.7168 16 6 1.4302 0.1412 4.8608 17 6 1.7848 -0.3705 6.0963 18 6 2.5897 -1.5007 6.1556 19 8 2.9470 -2.0071 7.3638 20 6 3.7711 -3.1746 7.3598 21 6 4.0679 -3.5941 8.8009 22 8 2.8535 -3.9907 9.4413 23 7 3.0075 -2.0926 5.0499 24 6 2.6855 -1.6363 3.8543 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 1.6667 -0.1932 -5.6867 34 1 3.1300 -0.7209 1.2494 35 1 1.6765 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 0.8085 1.0211 4.7846 38 1 1.4430 0.1054 7.0036 39 1 4.7070 -2.9570 6.8450 40 1 3.2528 -3.9834 6.8449 41 1 4.7676 -4.4299 8.7992 42 1 4.5060 -2.7547 9.3408 43 1 2.9664 -4.2697 10.3603 44 1 3.0460 -2.1462 2.9732 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269978093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:16 Heat of formation + Delta-G solvation = -61.521117 kcal Electronic energy + Delta-G solvation = -23114.872721 eV Core-core repulsion = 19646.311615 eV Total energy + Delta-G solvation = -3468.561106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55308 -38.65792 -37.62183 -36.68293 -34.39047 -32.44163 -32.07535 -30.37608 -28.62299 -27.50499 -26.57562 -26.03065 -24.11432 -22.93104 -22.17494 -21.65810 -18.58312 -18.37038 -17.93143 -17.14874 -16.77907 -16.45343 -15.89222 -15.22585 -14.74053 -14.52687 -14.47174 -14.25112 -14.07987 -13.58364 -13.42162 -13.19614 -12.89244 -12.78121 -12.60322 -12.32886 -12.27197 -11.63439 -11.42533 -11.20452 -11.05613 -11.03215 -10.65341 -10.54038 -10.45073 -10.23666 -9.96284 -9.79353 -9.59300 -9.55117 -9.30448 -9.03053 -8.56812 -7.16246 -6.07077 -4.04585 1.21017 1.53066 3.03954 3.28247 3.36589 3.38861 3.58334 3.86614 3.91851 4.42177 4.44933 4.73008 4.85211 4.90337 4.93263 5.00929 5.24533 5.24988 5.30549 5.38503 5.45736 5.52304 5.58185 5.70274 5.84148 5.98175 6.05370 6.06142 6.12274 6.28628 6.35841 6.53052 6.57083 6.83984 6.98683 7.01712 7.14965 7.21115 7.26658 7.32039 7.41710 7.74461 7.77223 8.02493 8.49927 8.97100 9.55242 11.05683 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.002674 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.316199 B =10467.638453 C =11225.868768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.127 3.873 14 N -0.732 5.732 15 C 0.146 3.854 16 C -0.127 4.127 17 C -0.136 4.136 18 C 0.251 3.749 19 O -0.306 6.306 20 C 0.074 3.926 21 C 0.076 3.924 22 O -0.567 6.567 23 N -0.501 5.501 24 C 0.058 3.942 25 H 0.032 0.968 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.401 0.599 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.378 0.622 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -3.514 24.941 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.061 4.061 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.004 3.996 14 N -0.362 5.362 15 C 0.039 3.961 16 C -0.157 4.157 17 C -0.157 4.157 18 C 0.070 3.930 19 O -0.214 6.214 20 C -0.002 4.002 21 C -0.002 4.002 22 O -0.372 6.372 23 N -0.223 5.223 24 C -0.104 4.104 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.225 0.775 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.962 -4.143 24.324 24.991 hybrid contribution 0.258 -0.128 -0.039 0.291 sum 4.220 -4.271 24.285 25.017 Atomic orbital electron populations 1.21762 0.94789 1.01217 1.00782 1.20634 0.95829 0.95898 0.93693 1.21759 1.00359 0.95624 1.00778 1.19598 0.96206 0.95465 0.92722 1.21071 1.31884 1.13353 0.88615 0.90429 1.25015 0.95727 0.96781 0.95998 1.69899 1.45888 1.40537 0.97896 0.86846 0.81278 0.83898 0.77646 1.20381 1.21504 1.19037 1.21656 0.98162 0.95853 0.83957 1.44872 1.56958 1.32822 1.01582 1.18787 0.95952 0.94702 0.86638 1.20860 1.03095 1.01486 0.90258 1.20754 1.00224 0.96194 0.98573 1.19471 0.96392 0.92761 0.84363 1.86230 1.66857 1.43666 1.24686 1.22541 0.95036 0.87050 0.95560 1.22281 0.86818 0.98461 0.92593 1.86590 1.32130 1.88326 1.30172 1.67105 1.24461 1.32308 0.98408 1.21895 0.99385 0.95133 0.93937 0.94931 0.90976 0.93464 0.93469 0.90980 0.94926 0.96420 0.96862 0.92772 0.92497 0.92490 0.76272 0.84508 0.84538 0.90487 0.91184 0.91586 0.92688 0.77472 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.15 0.30 -1.88 16 2 C -0.06 -1.05 0.54 -154.51 -0.08 -1.13 16 3 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.45 8.20 -34.44 -0.28 -13.73 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.86 16 7 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 9 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.76 16 13 C 0.13 1.89 3.82 -4.04 -0.02 1.87 16 14 N -0.73 -9.48 5.15 -58.48 -0.30 -9.79 16 15 C 0.15 1.91 6.68 -83.55 -0.56 1.35 16 16 C -0.13 -1.46 10.04 -39.12 -0.39 -1.86 16 17 C -0.14 -1.65 10.03 -39.31 -0.39 -2.04 16 18 C 0.25 3.49 7.49 -17.16 -0.13 3.36 16 19 O -0.31 -4.08 10.08 -23.93 -0.24 -4.33 16 20 C 0.07 0.79 5.69 37.16 0.21 1.00 16 21 C 0.08 0.59 7.43 37.16 0.28 0.86 16 22 O -0.57 -5.11 13.62 -40.09 -0.55 -5.66 16 23 N -0.50 -7.25 9.20 -13.17 -0.12 -7.37 16 24 C 0.06 0.80 10.49 -17.34 -0.18 0.62 16 25 H 0.03 0.46 6.86 -51.92 -0.36 0.10 16 26 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 30 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 31 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 32 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16 35 H 0.06 0.85 7.96 -51.93 -0.41 0.43 16 36 H 0.40 4.83 6.19 -40.82 -0.25 4.58 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 39 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 1.43 9.12 45.56 0.42 1.84 16 44 H 0.16 2.03 6.75 -52.49 -0.35 1.68 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -31.80 354.16 -6.94 -38.74 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.04 Total: 4.66 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.14 Total: -11.84 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.35 Total: -43.34 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.79 Total: -9.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.80 -6.94 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269978093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.780 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds