Wall clock time and date at job start Tue Mar 31 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 C 1.53002 * 109.47339 * 240.00033 * 2 1 3 5 5 C 1.50696 * 109.46856 * 59.99973 * 4 2 1 6 6 H 1.08001 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00138 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00401 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99580 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46997 * 90.00495 * 9 7 5 11 11 H 1.48501 * 109.47080 * 210.00206 * 9 7 5 12 12 H 1.48494 * 109.47338 * 330.00237 * 9 7 5 13 13 C 1.53008 * 109.47216 * 120.00246 * 2 1 3 14 14 N 1.46503 * 109.46840 * 299.99711 * 13 2 1 15 15 C 1.39977 * 119.99722 * 179.97438 * 14 13 2 16 16 C 1.39387 * 120.42594 * 179.97438 * 15 14 13 17 17 C 1.38343 * 118.42076 * 179.75238 * 16 15 14 18 18 C 1.38880 * 119.18871 * 0.51163 * 17 16 15 19 19 O 1.35788 * 119.60364 * 179.75605 * 18 17 16 20 20 C 1.42903 * 116.99784 * 179.72759 * 19 18 17 21 21 C 1.53000 * 109.46726 * 179.97438 * 20 19 18 22 22 O 1.42899 * 109.47405 * 64.99720 * 21 20 19 23 23 N 1.32190 * 120.79088 * 359.47275 * 18 17 16 24 24 C 1.31964 * 121.72170 * 0.28334 * 23 18 17 25 25 H 1.09009 * 109.47401 * 299.99991 * 1 2 3 26 26 H 1.08998 * 109.47285 * 59.99812 * 1 2 3 27 27 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47328 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47333 * 299.99817 * 3 2 1 30 30 H 1.09003 * 109.46991 * 60.00398 * 3 2 1 31 31 H 1.08997 * 109.47189 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.46874 * 300.00100 * 4 2 1 33 33 H 0.96998 * 119.99994 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46763 * 180.02562 * 13 2 1 35 35 H 1.08996 * 109.46857 * 59.99553 * 13 2 1 36 36 H 0.96999 * 119.99736 * 359.97438 * 14 13 2 37 37 H 1.08001 * 120.78682 * 0.02562 * 16 15 14 38 38 H 1.08006 * 120.40362 * 180.28467 * 17 16 15 39 39 H 1.09002 * 109.47382 * 59.99622 * 20 19 18 40 40 H 1.09001 * 109.46938 * 299.99609 * 20 19 18 41 41 H 1.09002 * 109.46642 * 184.99995 * 21 20 19 42 42 H 1.09002 * 109.47069 * 304.99524 * 21 20 19 43 43 H 0.96699 * 114.00112 * 180.02562 * 22 21 20 44 44 H 1.07997 * 119.63406 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4796 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 1.4323 0.1381 -4.8058 9 14 2.9443 -2.0009 -3.9033 10 1 2.0857 -3.2117 -3.9483 11 1 3.7358 -1.9086 -5.1564 12 1 3.8650 -2.0897 -2.7417 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 1.8894 -0.5093 3.7168 16 6 1.4302 0.1412 4.8608 17 6 1.7848 -0.3705 6.0963 18 6 2.5897 -1.5007 6.1556 19 8 2.9470 -2.0071 7.3638 20 6 3.7711 -3.1746 7.3598 21 6 4.0679 -3.5941 8.8009 22 8 2.8535 -3.9907 9.4413 23 7 3.0075 -2.0926 5.0499 24 6 2.6855 -1.6363 3.8543 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7216 -1.2490 32 1 1.6766 -1.7489 -1.2492 33 1 1.6667 -0.1932 -5.6867 34 1 3.1300 -0.7209 1.2494 35 1 1.6765 -1.7489 1.2492 36 1 0.9943 0.7582 2.3564 37 1 0.8085 1.0211 4.7846 38 1 1.4430 0.1054 7.0036 39 1 4.7070 -2.9570 6.8450 40 1 3.2528 -3.9834 6.8449 41 1 4.7676 -4.4299 8.7992 42 1 4.5060 -2.7547 9.3408 43 1 2.9664 -4.2697 10.3603 44 1 3.0460 -2.1462 2.9732 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269978093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:16 Heat of formation + Delta-G solvation = -85.852903 kcal Electronic energy + Delta-G solvation = -23115.927826 eV Core-core repulsion = 19646.311615 eV Total energy + Delta-G solvation = -3469.616211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51827 -39.71225 -38.75544 -37.42829 -35.66451 -34.25775 -33.15726 -31.23140 -30.00041 -28.91879 -27.97342 -27.24617 -25.09245 -24.39274 -23.00191 -22.92119 -19.76625 -19.46559 -18.88683 -18.57767 -18.15394 -17.47869 -16.76204 -16.36086 -16.00808 -15.79990 -15.55548 -15.31375 -15.21471 -14.93222 -14.58733 -14.27300 -14.17135 -14.06614 -13.92451 -13.62208 -13.30503 -13.00395 -12.80176 -12.69927 -12.32810 -12.28126 -12.13378 -12.02495 -11.74347 -11.51041 -11.16915 -11.14502 -11.02266 -10.89425 -10.69712 -10.54645 -10.26769 -8.21400 -8.17240 -6.21847 0.26952 0.54748 1.37513 1.39765 1.49649 2.17832 2.40057 2.53806 2.91986 3.14170 3.35091 3.49923 3.92409 3.98937 4.06671 4.09812 4.10078 4.19348 4.22546 4.27942 4.53501 4.61771 4.68651 4.75867 4.76305 4.76737 4.78920 4.95106 4.98049 5.04621 5.10892 5.12410 5.33301 5.38829 5.42703 5.45827 5.56933 5.70991 5.78193 6.20035 6.38907 6.44218 6.79498 6.85741 6.91153 7.04379 7.40822 8.94411 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.002674 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.316199 B =10467.638453 C =11225.868768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C -0.123 4.123 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.047 0.953 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.938 3.062 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.246 1.246 13 C 0.141 3.859 14 N -0.726 5.726 15 C 0.141 3.859 16 C -0.116 4.116 17 C -0.138 4.138 18 C 0.233 3.767 19 O -0.318 6.318 20 C 0.067 3.933 21 C 0.080 3.920 22 O -0.594 6.594 23 N -0.519 5.519 24 C 0.041 3.959 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.262 0.738 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.407 0.593 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.399 0.601 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 -4.039 27.666 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.056 4.056 3 C -0.180 4.180 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.065 0.935 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.763 3.237 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.169 1.169 13 C 0.016 3.984 14 N -0.358 5.358 15 C 0.034 3.966 16 C -0.146 4.146 17 C -0.158 4.158 18 C 0.052 3.948 19 O -0.226 6.226 20 C -0.009 4.009 21 C 0.003 3.997 22 O -0.403 6.403 23 N -0.241 5.241 24 C -0.120 4.120 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.245 0.755 37 H 0.184 0.816 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.250 0.750 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.581 -4.673 27.098 27.877 hybrid contribution 0.017 0.088 -0.795 0.800 sum 4.598 -4.585 26.303 27.092 Atomic orbital electron populations 1.21687 0.94471 1.01115 1.00781 1.20499 0.96036 0.95939 0.93166 1.21684 1.00242 0.95299 1.00784 1.19576 0.96104 0.95527 0.92932 1.21397 1.30160 1.12169 0.90328 0.93471 1.25909 0.97591 1.00149 0.95869 1.70055 1.48267 1.42790 0.98457 0.85840 0.79787 0.80070 0.78027 1.19747 1.21786 1.16921 1.21349 0.98215 0.95571 0.83252 1.44629 1.57257 1.32965 1.00970 1.18824 0.96117 0.94712 0.86908 1.21183 1.02317 1.01781 0.89358 1.21072 0.99462 0.95571 0.99741 1.19862 0.96951 0.93497 0.84448 1.86225 1.67332 1.44466 1.24609 1.22750 0.94540 0.85786 0.97774 1.22336 0.86804 0.99909 0.90693 1.86522 1.33135 1.88589 1.32085 1.67068 1.25226 1.33008 0.98812 1.22008 1.00165 0.95868 0.93922 0.91694 0.94188 0.93593 0.93548 0.94197 0.91671 0.96331 0.96555 0.92946 0.92241 0.92299 0.75503 0.81600 0.82406 0.90088 0.92933 0.88772 0.91559 0.75024 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 2 C -0.06 -1.87 0.54 -52.18 -0.03 -1.90 16 3 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 4 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 5 C -0.50 -26.93 8.20 25.60 0.21 -26.72 16 6 H 0.05 2.76 5.92 -2.91 -0.02 2.75 16 7 C 0.00 0.04 5.47 84.66 0.46 0.50 16 8 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 9 Si 0.94 43.49 27.47 68.60 1.88 45.38 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 13 C 0.14 3.82 3.82 86.38 0.33 4.15 16 14 N -0.73 -16.57 5.15 -338.93 -1.75 -18.32 16 15 C 0.14 3.30 6.68 38.22 0.26 3.55 16 16 C -0.12 -2.31 10.04 22.57 0.23 -2.08 16 17 C -0.14 -2.97 10.03 22.45 0.23 -2.75 16 18 C 0.23 6.18 7.49 84.79 0.63 6.82 16 19 O -0.32 -8.15 10.08 -86.53 -0.87 -9.03 16 20 C 0.07 1.38 5.69 71.98 0.41 1.79 16 21 C 0.08 1.08 7.43 71.98 0.53 1.62 16 22 O -0.59 -9.78 13.62 -144.34 -1.97 -11.74 16 23 N -0.52 -14.52 9.20 -308.42 -2.84 -17.36 16 24 C 0.04 1.07 10.49 84.78 0.89 1.96 16 25 H 0.06 1.68 6.86 -2.38 -0.02 1.67 16 26 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 30 H 0.06 1.68 6.86 -2.39 -0.02 1.66 16 31 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 32 H 0.02 0.69 7.57 -2.39 -0.02 0.67 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.06 1.61 7.97 -2.39 -0.02 1.59 16 35 H 0.06 1.60 7.96 -2.39 -0.02 1.59 16 36 H 0.41 8.24 6.19 -92.71 -0.57 7.67 16 37 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.08 1.54 8.10 -2.39 -0.02 1.53 16 40 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.40 2.28 9.12 -74.06 -0.68 1.60 16 44 H 0.16 3.90 6.75 -2.91 -0.02 3.88 16 Total: -1.00 -70.25 354.16 -0.13 -70.39 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.29 Total: 19.16 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 5.40 Total: -20.01 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -4.29 Total: -94.14 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -2.84 Total: -20.77 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Total: -70.25 -0.13 -70.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269978093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.468 kcal (2) G-P(sol) polarization free energy of solvation -70.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds