Wall clock time and date at job start Tue Mar 31 2020 06:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 120.00149 * 2 1 4 4 C 1.50702 * 109.46836 * 270.00364 * 3 2 1 5 5 H 1.07994 * 120.00445 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99368 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00175 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99773 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46720 * 90.00459 * 8 6 4 10 10 H 1.48501 * 109.47014 * 210.00174 * 8 6 4 11 11 H 1.48500 * 109.47090 * 330.00561 * 8 6 4 12 12 C 1.34777 * 119.99736 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99593 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00369 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47466 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 12 17 17 N 1.30259 * 125.61892 * 90.02396 * 16 15 14 18 18 C 1.34476 * 108.70058 * 179.97438 * 17 16 15 19 19 C 1.34328 * 107.66854 * 359.97438 * 18 17 16 20 20 C 1.50699 * 126.43977 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47171 * 60.00318 * 20 19 18 22 22 C 1.53001 * 109.46880 * 180.02562 * 20 19 18 23 23 C 1.53004 * 109.47448 * 300.00385 * 20 19 18 24 24 O 1.33961 * 125.62239 * 269.71520 * 16 15 14 25 25 H 1.08996 * 109.46784 * 269.99859 * 1 2 3 26 26 H 1.09003 * 109.47146 * 29.99481 * 1 2 3 27 27 H 1.08994 * 109.47096 * 150.00065 * 1 2 3 28 28 H 1.08998 * 109.46420 * 30.00391 * 3 2 1 29 29 H 1.08995 * 109.46904 * 150.00397 * 3 2 1 30 30 H 0.97004 * 119.99914 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47120 * 59.99760 * 14 12 2 32 32 H 1.08998 * 109.46862 * 300.00562 * 14 12 2 33 33 H 1.09002 * 109.47153 * 59.99773 * 15 14 12 34 34 H 1.09001 * 109.46832 * 299.99964 * 15 14 12 35 35 H 1.08003 * 126.16212 * 180.02562 * 18 17 16 36 36 H 1.09008 * 109.47260 * 60.00046 * 21 20 19 37 37 H 1.08998 * 109.47294 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.47431 * 300.00304 * 21 20 19 39 39 H 1.08997 * 109.47289 * 60.00302 * 22 20 19 40 40 H 1.08998 * 109.47132 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.46938 * 300.00342 * 22 20 19 42 42 H 1.09002 * 109.46843 * 59.99943 * 23 20 19 43 43 H 1.08992 * 109.47216 * 180.02562 * 23 20 19 44 44 H 1.09006 * 109.46963 * 300.00085 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.3077 4.2593 -3.9012 10 1 4.6979 4.2004 -3.4960 11 1 3.5559 2.2197 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 6 1.6260 -4.9404 0.0001 17 7 1.2467 -5.5978 -1.0584 18 6 0.6039 -6.7121 -0.6666 19 6 0.5959 -6.7271 0.6766 20 6 -0.0149 -7.7874 1.5563 21 6 0.6502 -9.1347 1.2679 22 6 0.1988 -7.4166 3.0252 23 6 -1.5144 -7.8870 1.2689 24 8 1.2410 -5.6184 1.0894 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 4.0296 4.4443 -0.8503 31 1 0.7584 -2.5299 -0.8903 32 1 0.7591 -2.5302 0.8896 33 1 3.0063 -3.5775 0.8895 34 1 3.0062 -3.5775 -0.8905 35 1 0.1726 -7.4605 -1.3150 36 1 1.7185 -9.0638 1.4727 37 1 0.2088 -9.9015 1.9045 38 1 0.4977 -9.3986 0.2215 39 1 -0.2753 -6.4568 3.2304 40 1 -0.2425 -8.1836 3.6615 41 1 1.2670 -7.3453 3.2302 42 1 -1.6669 -8.1510 0.2224 43 1 -1.9562 -8.6535 1.9054 44 1 -1.9883 -6.9271 1.4743 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274917230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:46 Heat of formation + Delta-G solvation = -33.297921 kcal Electronic energy + Delta-G solvation = -23355.262243 eV Core-core repulsion = 19887.924987 eV Total energy + Delta-G solvation = -3467.337256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.44723 -39.04880 -37.41203 -34.97063 -34.77964 -33.51318 -32.52623 -29.23599 -27.88018 -27.73512 -27.60984 -25.98186 -24.86583 -22.89970 -22.47371 -21.11400 -19.87599 -18.42755 -17.22061 -16.69828 -16.53193 -16.19087 -15.58432 -15.25362 -14.98306 -14.51023 -14.43831 -14.20675 -13.65525 -13.57289 -13.34323 -12.80899 -12.65893 -12.53255 -12.25739 -12.12177 -12.11957 -12.07806 -11.90078 -11.74801 -11.47305 -11.34348 -11.30298 -11.15361 -11.06820 -10.85059 -10.55662 -10.47651 -10.14719 -9.61934 -9.01728 -8.68917 -8.42533 -7.65381 -6.03362 -4.08070 1.36088 2.50842 2.62848 3.31492 3.37066 3.39227 3.45188 3.80085 4.13088 4.26324 4.45272 4.46830 4.47393 4.76930 4.91965 5.01949 5.13325 5.15978 5.20838 5.24742 5.31680 5.32403 5.39091 5.43596 5.48635 5.55526 5.61514 5.70482 5.73759 5.82448 5.82891 5.90988 5.96409 6.03662 6.07151 6.22164 6.27827 7.04595 7.44293 7.53341 7.71679 7.92949 8.24088 8.39709 8.90118 9.06948 9.57057 11.04740 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033261 B = 0.002678 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.614773 B =10453.509849 C =10654.529276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.601 5.601 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.507 3.493 13 O -0.542 6.542 14 C -0.136 4.136 15 C -0.008 4.008 16 C 0.200 3.800 17 N -0.481 5.481 18 C -0.039 4.039 19 C -0.043 4.043 20 C 0.019 3.981 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.140 4.140 24 O -0.195 6.195 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.178 0.822 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.236 -23.636 6.208 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.333 5.333 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.293 3.707 13 O -0.420 6.420 14 C -0.177 4.177 15 C -0.047 4.047 16 C -0.007 4.007 17 N -0.210 5.210 18 C -0.177 4.177 19 C -0.097 4.097 20 C 0.019 3.981 21 C -0.197 4.197 22 C -0.202 4.202 23 C -0.197 4.197 24 O -0.082 6.082 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.195 0.805 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.366 -23.215 5.681 26.051 hybrid contribution -0.132 0.173 -0.426 0.478 sum -10.498 -23.042 5.255 25.861 Atomic orbital electron populations 1.21657 0.81398 1.02685 1.00439 1.48149 1.06223 1.07833 1.71119 1.19312 0.92584 0.78027 0.97561 1.21436 1.36492 1.06266 0.92295 0.92422 1.24942 0.95343 0.96402 0.97467 1.69935 1.38459 1.14310 1.30737 0.86491 0.77659 0.78609 0.84643 1.20661 1.21081 1.19831 1.20098 0.88005 0.84923 0.77651 1.90683 1.13754 1.87229 1.50335 1.21662 0.98946 0.92630 1.04424 1.19874 0.95543 0.82420 1.06816 1.26449 0.98902 0.96937 0.78398 1.70500 1.14267 1.05926 1.30291 1.22959 1.03860 0.98072 0.92838 1.23319 1.01523 0.89691 0.95118 1.19095 0.95028 0.90292 0.93704 1.21931 1.00954 0.94473 1.02363 1.21873 1.02672 1.02070 0.93603 1.21932 0.92748 1.02667 1.02366 1.84402 1.56227 1.29702 1.37902 0.93704 0.90688 0.92409 0.94971 0.93735 0.92720 0.88623 0.89262 0.88157 0.86668 0.80476 0.92098 0.91255 0.91905 0.91948 0.91666 0.92008 0.91903 0.91259 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.74 2.86 -182.95 -0.52 -13.27 16 3 C 0.24 6.42 5.16 -5.19 -0.03 6.39 16 4 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.51 10.36 7.67 -10.99 -0.08 10.27 16 13 O -0.54 -13.30 15.56 5.55 0.09 -13.21 16 14 C -0.14 -2.01 4.23 -27.89 -0.12 -2.12 16 15 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 16 C 0.20 2.81 7.60 -12.94 -0.10 2.71 16 17 N -0.48 -7.06 11.29 -11.10 -0.13 -7.18 16 18 C -0.04 -0.45 11.24 -17.77 -0.20 -0.65 16 19 C -0.04 -0.47 5.70 -35.69 -0.20 -0.68 16 20 C 0.02 0.15 0.93 -155.66 -0.15 0.00 16 21 C -0.14 -0.85 8.35 37.15 0.31 -0.54 16 22 C -0.14 -1.06 8.06 37.16 0.30 -0.76 16 23 C -0.14 -0.85 8.35 37.16 0.31 -0.54 16 24 O -0.20 -2.57 10.24 5.39 0.06 -2.51 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 27 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 28 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 32 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 33 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 34 H 0.12 1.76 8.10 -51.93 -0.42 1.34 16 35 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.35 8.02 -51.93 -0.42 -0.06 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.35 8.02 -51.93 -0.42 -0.06 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -34.22 368.67 -6.53 -40.75 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -7.39 Total: -3.16 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 0.09 Total: 2.03 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.09 Total: -46.47 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.14 Total: -15.73 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.22 -6.53 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274917230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.450 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds