Wall clock time and date at job start Tue Mar 31 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 120.00149 * 2 1 4 4 C 1.50702 * 109.46836 * 270.00364 * 3 2 1 5 5 H 1.07994 * 120.00445 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99368 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00175 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99773 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46720 * 90.00459 * 8 6 4 10 10 H 1.48501 * 109.47014 * 210.00174 * 8 6 4 11 11 H 1.48500 * 109.47090 * 330.00561 * 8 6 4 12 12 C 1.34777 * 119.99736 * 180.02562 * 2 1 3 13 13 O 1.21288 * 119.99593 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00369 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47466 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 12 17 17 N 1.30259 * 125.61892 * 90.02396 * 16 15 14 18 18 C 1.34476 * 108.70058 * 179.97438 * 17 16 15 19 19 C 1.34328 * 107.66854 * 359.97438 * 18 17 16 20 20 C 1.50699 * 126.43977 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47171 * 60.00318 * 20 19 18 22 22 C 1.53001 * 109.46880 * 180.02562 * 20 19 18 23 23 C 1.53004 * 109.47448 * 300.00385 * 20 19 18 24 24 O 1.33961 * 125.62239 * 269.71520 * 16 15 14 25 25 H 1.08996 * 109.46784 * 269.99859 * 1 2 3 26 26 H 1.09003 * 109.47146 * 29.99481 * 1 2 3 27 27 H 1.08994 * 109.47096 * 150.00065 * 1 2 3 28 28 H 1.08998 * 109.46420 * 30.00391 * 3 2 1 29 29 H 1.08995 * 109.46904 * 150.00397 * 3 2 1 30 30 H 0.97004 * 119.99914 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47120 * 59.99760 * 14 12 2 32 32 H 1.08998 * 109.46862 * 300.00562 * 14 12 2 33 33 H 1.09002 * 109.47153 * 59.99773 * 15 14 12 34 34 H 1.09001 * 109.46832 * 299.99964 * 15 14 12 35 35 H 1.08003 * 126.16212 * 180.02562 * 18 17 16 36 36 H 1.09008 * 109.47260 * 60.00046 * 21 20 19 37 37 H 1.08998 * 109.47294 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.47431 * 300.00304 * 21 20 19 39 39 H 1.08997 * 109.47289 * 60.00302 * 22 20 19 40 40 H 1.08998 * 109.47132 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.46938 * 300.00342 * 22 20 19 42 42 H 1.09002 * 109.46843 * 59.99943 * 23 20 19 43 43 H 1.08992 * 109.47216 * 180.02562 * 23 20 19 44 44 H 1.09006 * 109.46963 * 300.00085 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0974 1.0963 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5534 3.6180 -0.6731 8 14 3.4379 3.4170 -3.4339 9 1 2.3077 4.2593 -3.9012 10 1 4.6979 4.2004 -3.4960 11 1 3.5559 2.2197 -4.3044 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 6 1.6260 -4.9404 0.0001 17 7 1.2467 -5.5978 -1.0584 18 6 0.6039 -6.7121 -0.6666 19 6 0.5959 -6.7271 0.6766 20 6 -0.0149 -7.7874 1.5563 21 6 0.6502 -9.1347 1.2679 22 6 0.1988 -7.4166 3.0252 23 6 -1.5144 -7.8870 1.2689 24 8 1.2410 -5.6184 1.0894 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 4.0296 4.4443 -0.8503 31 1 0.7584 -2.5299 -0.8903 32 1 0.7591 -2.5302 0.8896 33 1 3.0063 -3.5775 0.8895 34 1 3.0062 -3.5775 -0.8905 35 1 0.1726 -7.4605 -1.3150 36 1 1.7185 -9.0638 1.4727 37 1 0.2088 -9.9015 1.9045 38 1 0.4977 -9.3986 0.2215 39 1 -0.2753 -6.4568 3.2304 40 1 -0.2425 -8.1836 3.6615 41 1 1.2670 -7.3453 3.2302 42 1 -1.6669 -8.1510 0.2224 43 1 -1.9562 -8.6535 1.9054 44 1 -1.9883 -6.9271 1.4743 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274917230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:45 Heat of formation + Delta-G solvation = -56.377079 kcal Electronic energy + Delta-G solvation = -23356.263030 eV Core-core repulsion = 19887.924987 eV Total energy + Delta-G solvation = -3468.338044 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.40987 -40.69683 -38.02377 -36.67100 -35.85621 -34.91657 -34.46602 -30.55132 -29.41322 -28.26885 -28.18036 -27.39797 -26.38628 -24.31533 -23.72897 -22.20140 -20.61274 -20.01413 -18.70939 -18.32610 -17.70076 -17.48176 -17.03339 -16.76960 -16.14037 -16.04870 -15.26508 -14.97951 -14.93334 -14.61840 -14.34482 -14.24201 -13.83425 -13.67198 -13.44421 -13.42934 -13.19219 -13.11135 -13.02074 -12.81523 -12.61858 -12.59028 -12.51379 -12.30793 -12.21205 -12.18765 -11.99888 -11.89933 -11.70447 -11.41122 -10.68169 -10.64000 -9.63964 -9.43342 -8.22528 -6.37213 0.41505 1.36689 1.39767 1.50112 1.57131 1.65715 1.79974 2.31870 2.45261 3.02635 3.07254 3.57397 3.69115 3.81672 3.94179 3.95076 3.96422 4.15849 4.21345 4.35803 4.51835 4.62577 4.70224 4.71341 4.74027 4.79350 4.83974 4.87116 4.92512 4.95987 4.96563 5.02974 5.03209 5.09522 5.23454 5.26129 5.31148 5.36747 5.38703 5.55764 5.82891 6.06016 6.68604 6.73997 6.76823 7.27437 7.44789 8.84548 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033261 B = 0.002678 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.614773 B =10453.509849 C =10654.529276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.499 3.501 13 O -0.594 6.594 14 C -0.115 4.115 15 C -0.001 4.001 16 C 0.185 3.815 17 N -0.503 5.503 18 C -0.053 4.053 19 C -0.034 4.034 20 C 0.018 3.982 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.138 4.138 24 O -0.204 6.204 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.025 0.975 29 H 0.001 0.999 30 H 0.267 0.733 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.203 0.797 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 -25.668 5.748 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.341 5.341 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.288 3.712 13 O -0.475 6.475 14 C -0.155 4.155 15 C -0.040 4.040 16 C -0.021 4.021 17 N -0.233 5.233 18 C -0.191 4.191 19 C -0.087 4.087 20 C 0.017 3.983 21 C -0.195 4.195 22 C -0.202 4.202 23 C -0.195 4.195 24 O -0.090 6.090 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.043 0.957 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.649 -25.263 5.234 28.733 hybrid contribution 0.532 0.719 -0.213 0.920 sum -12.117 -24.543 5.021 27.828 Atomic orbital electron populations 1.21951 0.77862 1.03993 1.02697 1.48178 1.08448 1.06413 1.71057 1.18788 0.91224 0.80334 0.96050 1.21705 1.36838 1.06551 0.93066 0.92906 1.25862 0.94903 0.96446 1.01983 1.70050 1.38981 1.14776 1.33008 0.85414 0.78093 0.78200 0.79098 1.18795 1.20584 1.19826 1.21058 0.87733 0.86341 0.76081 1.90652 1.16312 1.88108 1.52460 1.21542 0.98519 0.88990 1.06466 1.19669 0.95375 0.82867 1.06081 1.26116 1.00079 0.97154 0.78732 1.70462 1.14795 1.07104 1.30924 1.23387 1.04130 0.97972 0.93634 1.24104 0.99793 0.89139 0.95679 1.19357 0.96024 0.89787 0.93102 1.21947 1.00246 0.94013 1.03342 1.21889 1.01966 1.02418 0.93962 1.21942 0.91245 1.02953 1.03325 1.84402 1.56465 1.30422 1.37757 0.90906 0.91456 0.89043 0.95706 0.98133 0.92378 0.87057 0.86278 0.88324 0.88217 0.78020 0.93260 0.89016 0.91277 0.92927 0.89349 0.93235 0.91283 0.89081 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.30 10.24 127.77 1.31 3.61 16 2 N -0.61 -26.01 2.86 -851.12 -2.43 -28.44 16 3 C 0.26 14.04 5.16 85.63 0.44 14.48 16 4 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.41 5.46 84.65 0.46 0.87 16 7 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 8 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.50 20.62 7.67 87.66 0.67 21.29 16 13 O -0.59 -30.43 15.56 -3.05 -0.05 -30.47 16 14 C -0.11 -3.26 4.23 29.85 0.13 -3.13 16 15 C 0.00 -0.04 5.13 29.85 0.15 0.11 16 16 C 0.19 5.10 7.60 88.34 0.67 5.77 16 17 N -0.50 -14.28 11.29 -303.83 -3.43 -17.71 16 18 C -0.05 -1.16 11.24 83.39 0.94 -0.22 16 19 C -0.03 -0.69 5.70 24.79 0.14 -0.55 16 20 C 0.02 0.23 0.93 -52.93 -0.05 0.18 16 21 C -0.14 -1.31 8.35 71.98 0.60 -0.71 16 22 C -0.15 -1.83 8.06 71.98 0.58 -1.25 16 23 C -0.14 -1.25 8.35 71.98 0.60 -0.65 16 24 O -0.20 -5.16 10.24 -3.63 -0.04 -5.20 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 27 H 0.09 2.11 6.44 -2.39 -0.02 2.10 16 28 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 29 H 0.00 0.03 7.42 -2.39 -0.02 0.02 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.11 2.87 7.40 -2.39 -0.02 2.85 16 32 H 0.12 2.71 8.11 -2.39 -0.02 2.69 16 33 H 0.10 2.82 8.10 -2.39 -0.02 2.80 16 34 H 0.10 3.15 8.10 -2.39 -0.02 3.13 16 35 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.07 0.58 8.02 -2.39 -0.02 0.56 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.56 8.02 -2.39 -0.02 0.54 16 43 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -76.98 368.67 4.21 -72.76 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.96 Total: 9.61 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 6.89 Total: 8.32 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -5.58 Total: -102.52 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.08 Total: -35.67 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -76.98 4.21 -72.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274917230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.384 kcal (2) G-P(sol) polarization free energy of solvation -76.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds