Wall clock time and date at job start Tue Mar 31 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47100 * 2 1 4 4 O 1.34260 * 126.52547 * 269.97238 * 3 2 1 5 5 C 1.34047 * 108.22946 * 179.97438 * 4 3 2 6 6 N 1.29940 * 109.24391 * 0.02562 * 5 4 3 7 7 C 1.36070 * 108.47539 * 359.97438 * 6 5 4 8 8 C 1.47410 * 126.44805 * 179.97438 * 7 6 5 9 9 O 1.21615 * 120.00155 * 175.47137 * 8 7 6 10 10 N 1.34782 * 120.00155 * 355.46829 * 8 7 6 11 11 C 1.46497 * 119.99738 * 4.43939 * 10 8 7 12 12 C 1.50704 * 109.47036 * 83.57145 * 11 10 8 13 13 H 1.08004 * 120.00000 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00078 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99882 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99803 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47261 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47291 * 119.99923 * 16 14 12 19 19 H 1.48500 * 109.46973 * 239.99711 * 16 14 12 20 20 C 1.46503 * 119.99973 * 184.43941 * 10 8 7 21 21 C 1.52998 * 109.46903 * 179.08183 * 20 10 8 22 22 C 1.52996 * 109.47263 * 299.08223 * 20 10 8 23 23 C 1.53001 * 109.47024 * 59.08425 * 20 10 8 24 24 C 1.53000 * 109.47148 * 54.53929 * 23 20 10 25 25 H 1.09007 * 109.47059 * 300.00049 * 1 2 3 26 26 H 1.09000 * 109.47057 * 59.99980 * 1 2 3 27 27 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47059 * 239.99951 * 2 1 3 29 29 H 1.09000 * 109.47057 * 120.00020 * 2 1 3 30 30 H 1.07997 * 125.38108 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.46896 * 203.56604 * 11 10 8 32 32 H 1.08995 * 109.47143 * 323.56835 * 11 10 8 33 33 H 0.96997 * 119.99863 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.46765 * 60.00102 * 21 20 10 35 35 H 1.08994 * 109.47038 * 180.02562 * 21 20 10 36 36 H 1.09003 * 109.47460 * 300.00484 * 21 20 10 37 37 H 1.09002 * 109.47226 * 66.17726 * 22 20 10 38 38 H 1.08993 * 109.47498 * 186.17714 * 22 20 10 39 39 H 1.08995 * 109.47321 * 306.17958 * 22 20 10 40 40 H 1.09000 * 109.46869 * 174.53827 * 23 20 10 41 41 H 1.08996 * 109.47198 * 294.54060 * 23 20 10 42 42 H 1.09000 * 109.47129 * 179.97438 * 24 23 20 43 43 H 1.09000 * 109.47153 * 299.99725 * 24 23 20 44 44 H 1.08996 * 109.46964 * 59.99987 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2992 2.1740 -1.0789 5 6 2.7227 3.3742 -0.6581 6 7 2.7294 3.3946 0.6411 7 6 2.3016 2.1847 1.0936 8 6 2.1578 1.7778 2.5031 9 8 1.6854 0.6912 2.7772 10 7 2.5500 2.6099 3.4882 11 6 3.0283 3.9559 3.1629 12 6 1.8506 4.8827 3.0040 13 1 0.8463 4.5066 3.1320 14 6 2.0553 6.2105 2.6941 15 7 3.2781 6.6683 2.5377 16 14 0.5955 7.3594 2.4979 17 1 -0.6629 6.6040 2.7237 18 1 0.6963 8.4615 3.4881 19 1 0.5927 7.9261 1.1252 20 6 2.4980 2.1684 4.8841 21 6 3.0157 3.2858 5.7920 22 6 1.0530 1.8342 5.2599 23 6 3.3711 0.9241 5.0583 24 6 4.7854 1.2188 4.5546 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0125 4.1946 -1.2978 31 1 3.6694 4.3176 3.9667 32 1 3.5947 3.9251 2.2322 33 1 3.4221 7.6025 2.3201 34 1 2.3936 4.1722 5.6679 35 1 2.9774 2.9571 6.8306 36 1 4.0451 3.5239 5.5244 37 1 0.7206 0.9668 4.6895 38 1 0.9968 1.6117 6.3253 39 1 0.4121 2.6859 5.0323 40 1 3.4103 0.6525 6.1132 41 1 2.9463 0.0992 4.4864 42 1 5.4075 0.3325 4.6791 43 1 4.7462 1.4903 3.4997 44 1 5.2102 2.0437 5.1266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276340266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:42 Heat of formation + Delta-G solvation = -8.190609 kcal Electronic energy + Delta-G solvation = -25985.364513 eV Core-core repulsion = 22519.115991 eV Total energy + Delta-G solvation = -3466.248522 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.81118 -39.52920 -36.35885 -34.49050 -33.73424 -33.12425 -31.71775 -29.96552 -28.64846 -27.59765 -26.15166 -24.29331 -23.15770 -23.09646 -22.11520 -21.38635 -19.76888 -18.08796 -16.66035 -16.43662 -16.02631 -15.53655 -15.42013 -14.63000 -14.51233 -14.36309 -14.06482 -13.89594 -13.36477 -13.08334 -12.75341 -12.53182 -12.32270 -12.12802 -11.93572 -11.72614 -11.52892 -11.41385 -11.14100 -11.10643 -10.95968 -10.91139 -10.67400 -10.62346 -10.53568 -10.21660 -10.15575 -9.96062 -9.48770 -9.22104 -8.88447 -8.36810 -8.21846 -7.46977 -5.92740 -3.92335 1.68171 2.84568 3.10752 3.30660 3.39041 3.43764 3.89792 4.12520 4.50599 4.73924 5.02822 5.19554 5.32043 5.40760 5.42107 5.46600 5.52601 5.63409 5.69847 5.81273 5.91996 6.02002 6.03425 6.09635 6.21425 6.23144 6.26117 6.32096 6.40076 6.46081 6.48880 6.54731 6.64171 6.67418 6.71324 6.92459 7.02061 7.10767 7.64401 7.92534 7.99837 8.22352 8.39250 8.49809 9.03964 9.14440 9.68736 11.15334 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.008738 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.049379 B = 3203.510255 C = 4708.421055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C 0.011 3.989 4 O -0.211 6.211 5 C 0.143 3.857 6 N -0.393 5.393 7 C -0.049 4.049 8 C 0.598 3.402 9 O -0.568 6.568 10 N -0.565 5.565 11 C 0.218 3.782 12 C -0.498 4.498 13 H 0.048 0.952 14 C 0.069 3.931 15 N -0.891 5.891 16 Si 0.882 3.118 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.178 3.822 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.132 4.132 24 C -0.146 4.146 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.245 0.755 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -10.364 -2.153 10.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.046 4.046 4 O -0.099 6.099 5 C -0.085 4.085 6 N -0.120 5.120 7 C -0.170 4.170 8 C 0.386 3.614 9 O -0.450 6.450 10 N -0.294 5.294 11 C 0.099 3.901 12 C -0.538 4.538 13 H 0.067 0.933 14 C -0.132 4.132 15 N -0.531 5.531 16 Si 0.711 3.289 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.213 1.213 20 C 0.093 3.907 21 C -0.206 4.206 22 C -0.216 4.216 23 C -0.170 4.170 24 C -0.203 4.203 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.155 -10.182 -1.654 10.316 hybrid contribution -0.980 0.831 -0.729 1.477 sum -0.824 -9.351 -2.382 9.685 Atomic orbital electron populations 1.21679 0.93738 1.02044 1.02475 1.20170 0.96649 0.86070 1.04361 1.23561 1.01460 0.95598 0.83955 1.84283 1.64526 1.24571 1.36508 1.28271 1.01101 0.86684 0.92427 1.71542 1.13675 1.18869 1.07875 1.21639 1.08609 0.91102 0.95616 1.16703 0.78229 0.83658 0.82843 1.90604 1.47952 1.23126 1.83341 1.48241 1.60885 1.16301 1.03985 1.20076 0.95890 0.75403 0.98716 1.21280 0.92601 0.93462 1.46411 0.93330 1.24731 0.95094 0.97734 0.95659 1.69933 1.19247 1.14739 1.49164 0.86708 0.83535 0.81139 0.77558 1.20185 1.21260 1.21254 1.20237 0.94940 0.93704 0.81821 1.22116 1.02327 0.98981 0.97190 1.22184 0.96209 1.02934 1.00241 1.21921 0.95509 0.98764 1.00806 1.21722 0.96294 1.00450 1.01826 0.91569 0.93030 0.91784 0.90777 0.87043 0.73914 0.94639 0.90505 0.93298 0.90425 0.92908 0.91822 0.90842 0.93140 0.92409 0.92139 0.90297 0.93745 0.92736 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 37.16 0.37 -1.51 16 2 C -0.04 -0.50 5.88 -27.89 -0.16 -0.66 16 3 C 0.01 0.19 6.69 -35.08 -0.23 -0.05 16 4 O -0.21 -3.51 10.73 6.51 0.07 -3.44 16 5 C 0.14 2.45 13.19 51.96 0.69 3.14 16 6 N -0.39 -8.43 7.18 -11.49 -0.08 -8.51 16 7 C -0.05 -1.02 6.66 -83.02 -0.55 -1.57 16 8 C 0.60 12.77 6.72 -12.52 -0.08 12.68 16 9 O -0.57 -11.76 11.22 5.26 0.06 -11.70 16 10 N -0.57 -12.09 1.50 -161.44 -0.24 -12.34 16 11 C 0.22 5.31 4.12 -5.19 -0.02 5.29 16 12 C -0.50 -13.27 8.25 -34.44 -0.28 -13.55 16 13 H 0.05 1.37 7.81 -52.48 -0.41 0.96 16 14 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 15 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 16 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C 0.18 3.30 0.73 -131.82 -0.10 3.20 16 21 C -0.15 -2.66 6.92 37.16 0.26 -2.40 16 22 C -0.16 -2.83 8.31 37.16 0.31 -2.52 16 23 C -0.13 -2.17 4.66 -26.73 -0.12 -2.29 16 24 C -0.15 -2.34 9.46 37.16 0.35 -1.99 16 25 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.11 1.67 6.58 -51.93 -0.34 1.33 16 30 H 0.25 3.10 8.06 -52.49 -0.42 2.67 16 31 H 0.04 0.90 5.47 -51.93 -0.28 0.62 16 32 H 0.08 2.00 5.22 -51.93 -0.27 1.73 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.08 1.57 7.48 -51.93 -0.39 1.18 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.16 5.42 -51.93 -0.28 0.88 16 37 H 0.07 1.38 6.29 -51.93 -0.33 1.05 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.39 6.42 -51.93 -0.33 1.06 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.99 7.21 -51.93 -0.37 0.62 16 44 H 0.05 0.85 6.58 -51.93 -0.34 0.51 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -29.97 345.83 -5.67 -35.65 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.72 Total: 3.38 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.31 Total: -0.47 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.41 Total: -44.98 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.13 Total: -15.14 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.97 -5.67 -35.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276340266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.454 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds