Wall clock time and date at job start Tue Mar 31 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47100 * 2 1 4 4 O 1.34260 * 126.52547 * 269.97238 * 3 2 1 5 5 C 1.34047 * 108.22946 * 179.97438 * 4 3 2 6 6 N 1.29940 * 109.24391 * 0.02562 * 5 4 3 7 7 C 1.36070 * 108.47539 * 359.97438 * 6 5 4 8 8 C 1.47410 * 126.44805 * 179.97438 * 7 6 5 9 9 O 1.21615 * 120.00155 * 175.47137 * 8 7 6 10 10 N 1.34782 * 120.00155 * 355.46829 * 8 7 6 11 11 C 1.46497 * 119.99738 * 4.43939 * 10 8 7 12 12 C 1.50704 * 109.47036 * 83.57145 * 11 10 8 13 13 H 1.08004 * 120.00000 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00078 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99882 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99803 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47261 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47291 * 119.99923 * 16 14 12 19 19 H 1.48500 * 109.46973 * 239.99711 * 16 14 12 20 20 C 1.46503 * 119.99973 * 184.43941 * 10 8 7 21 21 C 1.52998 * 109.46903 * 179.08183 * 20 10 8 22 22 C 1.52996 * 109.47263 * 299.08223 * 20 10 8 23 23 C 1.53001 * 109.47024 * 59.08425 * 20 10 8 24 24 C 1.53000 * 109.47148 * 54.53929 * 23 20 10 25 25 H 1.09007 * 109.47059 * 300.00049 * 1 2 3 26 26 H 1.09000 * 109.47057 * 59.99980 * 1 2 3 27 27 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47059 * 239.99951 * 2 1 3 29 29 H 1.09000 * 109.47057 * 120.00020 * 2 1 3 30 30 H 1.07997 * 125.38108 * 180.02562 * 5 4 3 31 31 H 1.08993 * 109.46896 * 203.56604 * 11 10 8 32 32 H 1.08995 * 109.47143 * 323.56835 * 11 10 8 33 33 H 0.96997 * 119.99863 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.46765 * 60.00102 * 21 20 10 35 35 H 1.08994 * 109.47038 * 180.02562 * 21 20 10 36 36 H 1.09003 * 109.47460 * 300.00484 * 21 20 10 37 37 H 1.09002 * 109.47226 * 66.17726 * 22 20 10 38 38 H 1.08993 * 109.47498 * 186.17714 * 22 20 10 39 39 H 1.08995 * 109.47321 * 306.17958 * 22 20 10 40 40 H 1.09000 * 109.46869 * 174.53827 * 23 20 10 41 41 H 1.08996 * 109.47198 * 294.54060 * 23 20 10 42 42 H 1.09000 * 109.47129 * 179.97438 * 24 23 20 43 43 H 1.09000 * 109.47153 * 299.99725 * 24 23 20 44 44 H 1.08996 * 109.46964 * 59.99987 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2992 2.1740 -1.0789 5 6 2.7227 3.3742 -0.6581 6 7 2.7294 3.3946 0.6411 7 6 2.3016 2.1847 1.0936 8 6 2.1578 1.7778 2.5031 9 8 1.6854 0.6912 2.7772 10 7 2.5500 2.6099 3.4882 11 6 3.0283 3.9559 3.1629 12 6 1.8506 4.8827 3.0040 13 1 0.8463 4.5066 3.1320 14 6 2.0553 6.2105 2.6941 15 7 3.2781 6.6683 2.5377 16 14 0.5955 7.3594 2.4979 17 1 -0.6629 6.6040 2.7237 18 1 0.6963 8.4615 3.4881 19 1 0.5927 7.9261 1.1252 20 6 2.4980 2.1684 4.8841 21 6 3.0157 3.2858 5.7920 22 6 1.0530 1.8342 5.2599 23 6 3.3711 0.9241 5.0583 24 6 4.7854 1.2188 4.5546 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0125 4.1946 -1.2978 31 1 3.6694 4.3176 3.9667 32 1 3.5947 3.9251 2.2322 33 1 3.4221 7.6025 2.3201 34 1 2.3936 4.1722 5.6679 35 1 2.9774 2.9571 6.8306 36 1 4.0451 3.5239 5.5244 37 1 0.7206 0.9668 4.6895 38 1 0.9968 1.6117 6.3253 39 1 0.4121 2.6859 5.0323 40 1 3.4103 0.6525 6.1132 41 1 2.9463 0.0992 4.4864 42 1 5.4075 0.3325 4.6791 43 1 4.7462 1.4903 3.4997 44 1 5.2102 2.0437 5.1266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276340266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:42 Heat of formation + Delta-G solvation = -25.488880 kcal Electronic energy + Delta-G solvation = -25986.114622 eV Core-core repulsion = 22519.115991 eV Total energy + Delta-G solvation = -3466.998631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.21827 -41.10222 -37.89723 -36.02859 -34.97782 -34.90187 -33.50741 -31.35971 -30.01919 -29.32300 -27.87190 -25.67014 -24.77250 -24.47288 -23.76001 -22.78434 -21.18320 -19.58831 -18.56668 -18.05071 -17.56136 -17.06334 -16.93905 -16.30921 -16.01687 -15.87338 -15.45944 -15.26939 -14.83008 -14.40284 -14.33402 -14.16451 -13.83189 -13.58177 -13.45733 -13.29329 -12.93300 -12.85224 -12.74911 -12.67426 -12.57137 -12.37129 -12.20493 -12.09812 -12.01340 -11.94280 -11.66334 -11.55389 -11.38617 -10.87882 -10.54026 -10.18278 -9.80577 -9.17580 -8.00627 -6.06031 0.26266 1.34867 1.37573 1.39784 1.48549 1.77295 2.32534 2.49206 2.57510 3.30464 3.39399 3.72262 3.83112 4.00231 4.08501 4.17703 4.23867 4.32698 4.43529 4.46313 4.65250 4.70529 4.71700 4.82882 4.83685 4.93270 4.96015 4.97016 5.06072 5.09491 5.20072 5.22502 5.26214 5.30384 5.32393 5.38842 5.47377 5.56614 5.65082 5.97585 6.13517 6.35518 6.68759 6.79531 7.07075 7.44524 7.59266 9.05908 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010888 B = 0.008738 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.049379 B = 3203.510255 C = 4708.421055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 C 0.027 3.973 4 O -0.201 6.201 5 C 0.157 3.843 6 N -0.446 5.446 7 C -0.093 4.093 8 C 0.591 3.409 9 O -0.568 6.568 10 N -0.572 5.572 11 C 0.239 3.761 12 C -0.496 4.496 13 H 0.025 0.975 14 C 0.032 3.968 15 N -0.914 5.914 16 Si 0.934 3.066 17 H -0.284 1.284 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.165 3.835 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.123 4.123 24 C -0.140 4.140 25 H 0.034 0.966 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.283 0.717 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.259 0.741 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 -11.514 -2.489 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.031 4.031 4 O -0.088 6.088 5 C -0.071 4.071 6 N -0.173 5.173 7 C -0.213 4.213 8 C 0.379 3.621 9 O -0.451 6.451 10 N -0.300 5.300 11 C 0.119 3.881 12 C -0.535 4.535 13 H 0.043 0.957 14 C -0.167 4.167 15 N -0.555 5.555 16 Si 0.761 3.239 17 H -0.210 1.210 18 H -0.206 1.206 19 H -0.206 1.206 20 C 0.081 3.919 21 C -0.197 4.197 22 C -0.206 4.206 23 C -0.161 4.161 24 C -0.198 4.198 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.298 0.702 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.048 -11.347 -1.975 11.518 hybrid contribution -0.926 1.134 -0.667 1.609 sum -0.974 -10.213 -2.643 10.594 Atomic orbital electron populations 1.21642 0.92846 1.03599 1.01243 1.20342 0.97201 0.84039 1.05551 1.24132 0.99229 0.96468 0.83229 1.84321 1.64210 1.24391 1.35887 1.29030 0.99003 0.87267 0.91810 1.71408 1.15793 1.20035 1.10073 1.21753 1.11355 0.92034 0.96113 1.16925 0.78035 0.83719 0.83399 1.90578 1.47981 1.22924 1.83625 1.48200 1.61156 1.15317 1.05373 1.19603 0.94629 0.76542 0.97355 1.21279 0.92065 0.94121 1.46031 0.95684 1.25254 0.97015 0.98821 0.95613 1.70009 1.20482 1.15065 1.49922 0.85902 0.80687 0.79501 0.77778 1.20983 1.20617 1.20566 1.20572 0.95856 0.94929 0.80547 1.22027 1.00977 0.97590 0.99150 1.22096 0.95255 1.01174 1.02118 1.21848 0.94861 0.96893 1.02458 1.21669 0.96655 1.01579 0.99850 0.94686 0.92285 0.88863 0.87334 0.87992 0.70174 0.96154 0.91965 0.93139 0.93526 0.89360 0.92583 0.91905 0.89888 0.95059 0.89079 0.91548 0.91345 0.95705 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.89 71.98 0.71 -2.67 16 2 C -0.03 -0.91 5.88 29.85 0.18 -0.73 16 3 C 0.03 0.91 6.69 25.19 0.17 1.08 16 4 O -0.20 -6.39 10.73 0.37 0.00 -6.38 16 5 C 0.16 5.26 13.19 130.52 1.72 6.98 16 6 N -0.45 -19.47 7.18 -305.15 -2.19 -21.67 16 7 C -0.09 -3.94 6.66 40.40 0.27 -3.68 16 8 C 0.59 25.91 6.72 86.66 0.58 26.50 16 9 O -0.57 -23.91 11.22 -4.08 -0.05 -23.96 16 10 N -0.57 -25.20 1.50 -782.93 -1.18 -26.38 16 11 C 0.24 12.09 4.12 85.63 0.35 12.44 16 12 C -0.50 -27.26 8.25 25.60 0.21 -27.05 16 13 H 0.02 1.46 7.81 -2.91 -0.02 1.44 16 14 C 0.03 1.75 5.46 84.66 0.46 2.21 16 15 N -0.91 -51.71 13.29 21.45 0.28 -51.43 16 16 Si 0.93 44.38 29.54 68.60 2.03 46.41 16 17 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 C 0.16 6.11 0.73 3.60 0.00 6.11 16 21 C -0.14 -4.98 6.92 71.98 0.50 -4.48 16 22 C -0.15 -5.30 8.31 71.98 0.60 -4.70 16 23 C -0.12 -3.86 4.66 30.59 0.14 -3.72 16 24 C -0.14 -4.39 9.46 71.98 0.68 -3.71 16 25 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 28 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.10 2.96 6.58 -2.39 -0.02 2.95 16 30 H 0.28 6.63 8.06 -2.91 -0.02 6.61 16 31 H 0.02 1.08 5.47 -2.39 -0.01 1.07 16 32 H 0.06 3.39 5.22 -2.39 -0.01 3.37 16 33 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.05 1.93 7.48 -2.39 -0.02 1.91 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.05 5.42 -2.39 -0.01 2.04 16 37 H 0.06 2.36 6.29 -2.39 -0.02 2.34 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.07 2.28 6.42 -2.39 -0.02 2.27 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.02 0.90 7.21 -2.39 -0.02 0.88 16 44 H 0.06 1.72 6.58 -2.39 -0.02 1.70 16 Total: -1.00 -66.68 345.83 6.47 -60.21 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.99 Total: 18.61 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 6.58 Total: 4.59 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -3.08 Total: -99.47 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.04 Total: -30.34 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.68 6.47 -60.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276340266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.723 kcal (2) G-P(sol) polarization free energy of solvation -66.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds