Wall clock time and date at job start Tue Mar 31 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.52998 * 109.47365 * 175.23861 * 3 2 1 5 5 C 1.52999 * 109.47037 * 294.41327 * 4 3 2 6 6 C 1.50706 * 109.46965 * 295.23700 * 3 2 1 7 7 C 1.41377 * 126.80314 * 274.99978 * 6 3 2 8 8 C 1.35450 * 103.98525 * 179.97438 * 7 6 3 9 9 C 1.50698 * 126.77391 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47265 * 90.00466 * 9 8 7 11 11 C 1.34777 * 120.00277 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99829 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99941 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.47062 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47591 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99390 * 359.97438 * 15 14 13 17 17 C 1.37868 * 120.00544 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00500 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99876 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46809 * 90.00524 * 19 17 15 21 21 H 1.48497 * 109.47057 * 209.99980 * 19 17 15 22 22 H 1.48497 * 109.47176 * 330.00601 * 19 17 15 23 23 O 1.34043 * 106.44780 * 0.02562 * 8 7 6 24 24 N 1.20921 * 111.56416 * 359.70761 * 23 8 7 25 25 H 1.09000 * 109.46646 * 66.92059 * 1 2 3 26 26 H 1.09000 * 109.47012 * 186.91346 * 1 2 3 27 27 H 1.08992 * 109.47278 * 306.91663 * 1 2 3 28 28 H 1.08994 * 109.47610 * 239.99703 * 2 1 3 29 29 H 1.09002 * 109.47200 * 119.99272 * 2 1 3 30 30 H 1.08994 * 109.47099 * 55.23520 * 3 2 1 31 31 H 1.09002 * 109.46845 * 54.41137 * 4 3 2 32 32 H 1.08996 * 109.47220 * 174.41435 * 4 3 2 33 33 H 1.08996 * 109.47245 * 186.04341 * 5 4 3 34 34 H 1.08999 * 109.46972 * 306.03891 * 5 4 3 35 35 H 1.09000 * 109.47310 * 66.03642 * 5 4 3 36 36 H 1.07998 * 128.00663 * 0.03732 * 7 6 3 37 37 H 1.09008 * 109.46976 * 210.00196 * 9 8 7 38 38 H 1.08999 * 109.47239 * 329.99768 * 9 8 7 39 39 H 0.96998 * 119.99902 * 359.97438 * 10 9 8 40 40 H 1.09000 * 109.47036 * 299.99552 * 13 11 10 41 41 H 1.08997 * 109.47131 * 60.00028 * 13 11 10 42 42 H 1.09002 * 109.47146 * 300.00630 * 14 13 11 43 43 H 1.09007 * 109.46715 * 59.99716 * 14 13 11 44 44 H 0.96997 * 119.99862 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4443 0.1197 5 6 3.9703 0.8852 1.4851 6 6 1.6362 2.1180 -1.2853 7 6 2.3269 2.0746 -2.5181 8 6 1.5663 2.8301 -3.3461 9 6 1.8365 3.1278 -4.7985 10 7 1.2054 2.1023 -5.6328 11 6 1.3153 2.1637 -6.9747 12 8 1.9362 3.0683 -7.4915 13 6 0.6665 1.1085 -7.8329 14 6 0.9407 1.4108 -9.3075 15 6 0.2915 0.3559 -10.1658 16 1 -0.2610 -0.4498 -9.7056 17 6 0.4038 0.4188 -11.5385 18 7 -0.1632 -0.5015 -12.2876 19 14 1.3602 1.8122 -12.3345 20 1 2.7827 1.4133 -12.4851 21 1 0.7847 2.1071 -13.6713 22 1 1.2735 3.0235 -11.4800 23 8 0.5266 3.2615 -2.6184 24 7 0.5797 2.8527 -1.4816 25 1 -0.3632 0.4029 -0.9454 26 1 -0.3633 -1.0202 0.1237 27 1 -0.3633 0.6172 0.8216 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6086 1.9804 0.8442 31 1 3.9922 0.8237 -0.6681 32 1 3.9364 2.4643 0.0202 33 1 5.0480 0.9854 1.6136 34 1 3.4576 1.4395 2.2713 35 1 3.6937 -0.1675 1.5433 36 1 3.2471 1.5579 -2.7470 37 1 1.4259 4.1054 -5.0514 38 1 2.9121 3.1288 -4.9752 39 1 0.7091 1.3786 -5.2195 40 1 1.0773 0.1311 -7.5796 41 1 -0.4091 1.1074 -7.6566 42 1 0.5298 2.3882 -9.5605 43 1 2.0164 1.4122 -9.4841 44 1 -0.0839 -0.4574 -13.2533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292292896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:56 Heat of formation + Delta-G solvation = -8.454984 kcal Electronic energy + Delta-G solvation = -22921.629731 eV Core-core repulsion = 19455.369745 eV Total energy + Delta-G solvation = -3466.259986 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.22087 -39.37464 -37.92011 -35.36746 -33.50770 -33.44000 -32.31980 -31.91483 -31.17865 -27.66306 -27.29593 -25.38717 -23.80034 -23.23802 -21.50729 -21.23388 -20.19597 -19.70361 -17.87225 -17.72672 -17.04579 -16.08896 -15.91506 -15.50366 -15.31113 -15.12711 -14.65404 -14.26411 -14.10140 -13.99078 -13.76169 -13.25947 -13.07972 -12.67959 -12.56834 -12.49389 -12.30248 -12.14553 -11.77671 -11.65642 -11.44313 -11.34481 -11.10506 -11.00261 -10.97093 -10.26266 -10.19884 -10.08307 -9.97004 -9.77608 -9.25976 -9.18427 -9.08334 -8.51647 -6.03777 -4.02851 1.06929 1.91636 2.72397 3.01229 3.37277 3.43907 3.47284 3.54581 3.69474 4.03128 4.37895 4.49896 4.50055 4.65682 4.72457 4.81396 4.87934 4.96905 5.02021 5.10865 5.25918 5.29161 5.31567 5.33061 5.37607 5.51221 5.52289 5.55677 5.61247 5.67905 5.75422 5.78582 5.89643 5.95711 6.03818 6.06019 6.36983 6.65253 7.33690 7.41177 7.60347 7.77413 7.98670 8.45569 8.55061 8.99051 9.59011 11.08985 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.002488 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.023393 B =11249.173664 C =11514.739687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.010 4.010 4 C -0.117 4.117 5 C -0.153 4.153 6 C 0.026 3.974 7 C -0.208 4.208 8 C -0.044 4.044 9 C 0.201 3.799 10 N -0.740 5.740 11 C 0.514 3.486 12 O -0.536 6.536 13 C -0.121 4.121 14 C 0.001 3.999 15 C -0.526 4.526 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.903 5.903 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 O 0.106 5.894 24 N -0.358 5.358 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.173 0.827 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.402 0.598 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.024 0.976 43 H 0.019 0.981 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.393 2.925 28.861 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.029 4.029 4 C -0.155 4.155 5 C -0.210 4.210 6 C -0.133 4.133 7 C -0.230 4.230 8 C -0.108 4.108 9 C 0.077 3.923 10 N -0.396 5.396 11 C 0.303 3.697 12 O -0.412 6.412 13 C -0.161 4.161 14 C -0.037 4.037 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.542 5.542 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 O 0.038 5.962 24 N -0.060 5.060 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.190 0.810 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.237 0.763 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.791 3.952 29.059 29.893 hybrid contribution 0.902 -0.034 -0.578 1.072 sum 6.693 3.918 28.481 29.518 Atomic orbital electron populations 1.21779 0.95405 1.01650 1.02182 1.21615 0.96401 0.94602 1.02820 1.19708 0.96228 0.95545 0.91450 1.21556 0.93495 1.01956 0.98464 1.21813 1.01404 1.01298 0.96524 1.23536 0.92428 0.99454 0.97884 1.22470 1.03883 1.04498 0.92124 1.24462 0.89884 0.99730 0.96677 1.19549 0.99751 0.93776 0.79259 1.46226 1.57353 1.29395 1.06647 1.21603 0.79623 0.87301 0.81142 1.90673 1.41520 1.36028 1.72960 1.21684 1.00891 0.96213 0.97307 1.19383 0.97336 0.97745 0.89211 1.21101 1.33844 1.10311 0.91089 0.90923 1.24979 0.95143 0.95819 0.97343 1.69914 1.44664 1.34455 1.05168 0.86790 0.80327 0.83763 0.78635 1.20249 1.21449 1.18497 1.84871 1.39981 1.55656 1.15709 1.73884 1.20488 1.14158 0.97469 0.92828 0.92497 0.92632 0.91437 0.90664 0.89486 0.91220 0.91561 0.92364 0.92584 0.92237 0.80998 0.89243 0.88242 0.76335 0.89452 0.89381 0.95740 0.96216 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.61 37.16 0.36 -0.82 16 2 C -0.12 -0.77 5.26 -26.73 -0.14 -0.91 16 3 C -0.01 -0.07 2.32 -91.77 -0.21 -0.29 16 4 C -0.12 -0.67 4.92 -26.73 -0.13 -0.80 16 5 C -0.15 -0.72 9.53 37.16 0.35 -0.36 16 6 C 0.03 0.24 5.35 -82.10 -0.44 -0.20 16 7 C -0.21 -1.81 10.32 -39.38 -0.41 -2.22 16 8 C -0.04 -0.43 6.86 -35.30 -0.24 -0.67 16 9 C 0.20 2.13 6.24 -5.20 -0.03 2.09 16 10 N -0.74 -9.11 5.55 -61.47 -0.34 -9.45 16 11 C 0.51 8.76 7.83 -10.99 -0.09 8.68 16 12 O -0.54 -11.18 15.98 5.56 0.09 -11.09 16 13 C -0.12 -2.25 5.64 -27.88 -0.16 -2.41 16 14 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 15 C -0.53 -14.86 9.66 -34.45 -0.33 -15.20 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 19 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 23 O 0.11 1.21 11.20 17.17 0.19 1.41 16 24 N -0.36 -4.14 11.88 33.42 0.40 -3.74 16 25 H 0.05 0.51 7.44 -51.93 -0.39 0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.39 6.51 -51.93 -0.34 0.06 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.37 7.80 -51.93 -0.41 -0.03 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.25 6.78 -51.93 -0.35 -0.10 16 36 H 0.17 1.16 7.84 -52.49 -0.41 0.74 16 37 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.40 4.10 8.46 -40.82 -0.35 3.75 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 43 H 0.02 0.49 7.53 -51.92 -0.39 0.10 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -33.54 364.48 -6.96 -40.50 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -7.24 Total: -2.51 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.66 Total: -11.24 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.83 Total: -40.27 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.28 Total: -9.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.54 -6.96 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292292896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.050 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds