Wall clock time and date at job start Tue Mar 31 2020 06:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.52998 * 109.47365 * 175.23861 * 3 2 1 5 5 C 1.52999 * 109.47037 * 294.41327 * 4 3 2 6 6 C 1.50706 * 109.46965 * 295.23700 * 3 2 1 7 7 C 1.41377 * 126.80314 * 274.99978 * 6 3 2 8 8 C 1.35450 * 103.98525 * 179.97438 * 7 6 3 9 9 C 1.50698 * 126.77391 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47265 * 90.00466 * 9 8 7 11 11 C 1.34777 * 120.00277 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99829 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99941 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.47062 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47591 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99390 * 359.97438 * 15 14 13 17 17 C 1.37868 * 120.00544 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00500 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99876 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46809 * 90.00524 * 19 17 15 21 21 H 1.48497 * 109.47057 * 209.99980 * 19 17 15 22 22 H 1.48497 * 109.47176 * 330.00601 * 19 17 15 23 23 O 1.34043 * 106.44780 * 0.02562 * 8 7 6 24 24 N 1.20921 * 111.56416 * 359.70761 * 23 8 7 25 25 H 1.09000 * 109.46646 * 66.92059 * 1 2 3 26 26 H 1.09000 * 109.47012 * 186.91346 * 1 2 3 27 27 H 1.08992 * 109.47278 * 306.91663 * 1 2 3 28 28 H 1.08994 * 109.47610 * 239.99703 * 2 1 3 29 29 H 1.09002 * 109.47200 * 119.99272 * 2 1 3 30 30 H 1.08994 * 109.47099 * 55.23520 * 3 2 1 31 31 H 1.09002 * 109.46845 * 54.41137 * 4 3 2 32 32 H 1.08996 * 109.47220 * 174.41435 * 4 3 2 33 33 H 1.08996 * 109.47245 * 186.04341 * 5 4 3 34 34 H 1.08999 * 109.46972 * 306.03891 * 5 4 3 35 35 H 1.09000 * 109.47310 * 66.03642 * 5 4 3 36 36 H 1.07998 * 128.00663 * 0.03732 * 7 6 3 37 37 H 1.09008 * 109.46976 * 210.00196 * 9 8 7 38 38 H 1.08999 * 109.47239 * 329.99768 * 9 8 7 39 39 H 0.96998 * 119.99902 * 359.97438 * 10 9 8 40 40 H 1.09000 * 109.47036 * 299.99552 * 13 11 10 41 41 H 1.08997 * 109.47131 * 60.00028 * 13 11 10 42 42 H 1.09002 * 109.47146 * 300.00630 * 14 13 11 43 43 H 1.09007 * 109.46715 * 59.99716 * 14 13 11 44 44 H 0.96997 * 119.99862 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4443 0.1197 5 6 3.9703 0.8852 1.4851 6 6 1.6362 2.1180 -1.2853 7 6 2.3269 2.0746 -2.5181 8 6 1.5663 2.8301 -3.3461 9 6 1.8365 3.1278 -4.7985 10 7 1.2054 2.1023 -5.6328 11 6 1.3153 2.1637 -6.9747 12 8 1.9362 3.0683 -7.4915 13 6 0.6665 1.1085 -7.8329 14 6 0.9407 1.4108 -9.3075 15 6 0.2915 0.3559 -10.1658 16 1 -0.2610 -0.4498 -9.7056 17 6 0.4038 0.4188 -11.5385 18 7 -0.1632 -0.5015 -12.2876 19 14 1.3602 1.8122 -12.3345 20 1 2.7827 1.4133 -12.4851 21 1 0.7847 2.1071 -13.6713 22 1 1.2735 3.0235 -11.4800 23 8 0.5266 3.2615 -2.6184 24 7 0.5797 2.8527 -1.4816 25 1 -0.3632 0.4029 -0.9454 26 1 -0.3633 -1.0202 0.1237 27 1 -0.3633 0.6172 0.8216 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6086 1.9804 0.8442 31 1 3.9922 0.8237 -0.6681 32 1 3.9364 2.4643 0.0202 33 1 5.0480 0.9854 1.6136 34 1 3.4576 1.4395 2.2713 35 1 3.6937 -0.1675 1.5433 36 1 3.2471 1.5579 -2.7470 37 1 1.4259 4.1054 -5.0514 38 1 2.9121 3.1288 -4.9752 39 1 0.7091 1.3786 -5.2195 40 1 1.0773 0.1311 -7.5796 41 1 -0.4091 1.1074 -7.6566 42 1 0.5298 2.3882 -9.5605 43 1 2.0164 1.4122 -9.4841 44 1 -0.0839 -0.4574 -13.2533 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292292896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:55 Heat of formation + Delta-G solvation = -29.681447 kcal Electronic energy + Delta-G solvation = -22922.550180 eV Core-core repulsion = 19455.369745 eV Total energy + Delta-G solvation = -3467.180434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.00127 -40.71434 -38.48254 -36.48189 -35.50196 -34.15629 -33.45395 -32.86696 -32.48986 -28.90845 -27.98912 -26.87366 -24.51719 -23.76255 -23.15057 -22.00269 -21.32846 -20.64974 -19.26255 -18.67076 -18.38308 -17.47390 -16.95556 -16.69723 -16.21217 -16.16787 -15.61496 -15.25183 -15.14460 -14.89517 -14.77746 -14.50924 -14.45787 -14.07517 -13.56543 -13.38541 -13.26741 -12.92669 -12.87262 -12.68787 -12.37616 -12.27344 -12.09513 -11.94841 -11.91195 -11.74113 -11.60017 -11.52900 -11.38096 -11.08048 -10.88442 -10.76092 -10.43006 -10.20079 -8.29459 -6.32520 0.27514 1.19853 1.35709 1.37948 1.52645 1.66120 1.91666 2.37078 2.39779 3.06095 3.06435 3.31541 3.79750 3.94878 3.97794 4.02419 4.08560 4.21816 4.34985 4.38376 4.44274 4.48092 4.53288 4.54349 4.62990 4.71246 4.74543 4.83413 4.98811 5.01963 5.03830 5.07891 5.20014 5.22212 5.26121 5.28601 5.40576 5.41004 5.47870 5.48363 5.63394 6.25174 6.47720 6.74390 7.22184 7.23434 7.32941 8.86187 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026685 B = 0.002488 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.023393 B =11249.173664 C =11514.739687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.009 4.009 4 C -0.113 4.113 5 C -0.152 4.152 6 C 0.027 3.973 7 C -0.196 4.196 8 C -0.047 4.047 9 C 0.205 3.795 10 N -0.719 5.719 11 C 0.523 3.477 12 O -0.578 6.578 13 C -0.117 4.117 14 C 0.004 3.996 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.011 3.989 18 N -0.945 5.945 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.259 1.259 23 O 0.086 5.914 24 N -0.383 5.383 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.196 0.804 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.415 0.585 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.011 0.989 43 H 0.012 0.988 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 2.976 30.500 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.029 4.029 4 C -0.151 4.151 5 C -0.209 4.209 6 C -0.132 4.132 7 C -0.218 4.218 8 C -0.111 4.111 9 C 0.081 3.919 10 N -0.374 5.374 11 C 0.311 3.689 12 O -0.457 6.457 13 C -0.157 4.157 14 C -0.034 4.034 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.764 3.236 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.183 1.183 23 O 0.021 5.979 24 N -0.088 5.088 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.214 0.786 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.252 0.748 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.029 0.971 43 H 0.031 0.969 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.249 3.992 30.739 31.833 hybrid contribution 0.392 -0.116 -0.966 1.049 sum 7.641 3.875 29.772 30.981 Atomic orbital electron populations 1.21775 0.96453 1.01904 1.00858 1.21613 0.95375 0.94268 1.03768 1.19814 0.97327 0.95588 0.90136 1.21539 0.92136 1.01967 0.99423 1.21811 1.01742 1.01602 0.95786 1.23984 0.91700 0.98543 0.98962 1.22773 1.04146 1.03526 0.91336 1.24347 0.90062 1.00356 0.96323 1.19591 1.00204 0.92874 0.79258 1.45927 1.56352 1.29830 1.05284 1.21100 0.79139 0.86232 0.82383 1.90664 1.43537 1.37422 1.74046 1.21503 1.02173 0.97754 0.94257 1.19241 0.96152 0.95604 0.92424 1.21446 1.33123 1.10431 0.91688 0.93273 1.25839 0.96320 0.98250 0.98245 1.70033 1.46445 1.36454 1.05650 0.85805 0.79294 0.80668 0.77810 1.19246 1.20647 1.18303 1.84844 1.40762 1.56339 1.15946 1.73896 1.21791 1.15426 0.97694 0.94943 0.91682 0.92914 0.91266 0.88866 0.90043 0.90415 0.92045 0.91843 0.92679 0.91566 0.78645 0.89530 0.86990 0.74822 0.87687 0.88091 0.97052 0.96919 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.61 71.98 0.69 -1.49 16 2 C -0.11 -1.24 5.26 30.60 0.16 -1.08 16 3 C -0.01 -0.12 2.32 -11.54 -0.03 -0.14 16 4 C -0.11 -1.02 4.92 30.59 0.15 -0.87 16 5 C -0.15 -1.06 9.53 71.98 0.69 -0.37 16 6 C 0.03 0.47 5.35 43.58 0.23 0.70 16 7 C -0.20 -2.96 10.32 22.40 0.23 -2.72 16 8 C -0.05 -0.85 6.86 25.04 0.17 -0.68 16 9 C 0.20 3.93 6.24 85.63 0.53 4.46 16 10 N -0.72 -16.16 5.55 -466.79 -2.59 -18.75 16 11 C 0.52 16.96 7.83 87.66 0.69 17.65 16 12 O -0.58 -23.42 15.98 -3.03 -0.05 -23.47 16 13 C -0.12 -4.20 5.64 29.85 0.17 -4.03 16 14 C 0.00 0.18 3.33 29.85 0.10 0.28 16 15 C -0.53 -30.11 9.66 25.60 0.25 -29.86 16 16 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 17 C 0.01 0.64 5.47 84.65 0.46 1.11 16 18 N -0.95 -58.97 13.96 21.44 0.30 -58.67 16 19 Si 0.94 46.18 27.47 68.60 1.88 48.06 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16 23 O 0.09 1.92 11.20 71.60 0.80 2.73 16 24 N -0.38 -8.61 11.88 -49.55 -0.59 -9.20 16 25 H 0.03 0.59 7.44 -2.39 -0.02 0.58 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.72 6.51 -2.39 -0.02 0.70 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.08 0.59 7.80 -2.39 -0.02 0.57 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.07 0.38 6.78 -2.39 -0.02 0.36 16 36 H 0.20 1.93 7.84 -2.91 -0.02 1.91 16 37 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.42 7.42 8.46 -92.71 -0.78 6.64 16 40 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.01 0.56 7.16 -2.39 -0.02 0.55 16 43 H 0.01 0.62 7.53 -2.38 -0.02 0.60 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -72.50 364.48 4.40 -68.09 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.15 Total: 8.25 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.50 Total: -17.04 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -2.88 Total: -86.62 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.75 Total: -20.75 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.06 kcal Total: -72.50 4.40 -68.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292292896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.413 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds