Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29937 * 125.37791 * 2 1 4 4 C 1.36074 * 108.47832 * 179.97438 * 3 2 1 5 5 C 1.47420 * 126.45104 * 180.02562 * 4 3 2 6 6 O 1.21603 * 119.99907 * 173.77250 * 5 4 3 7 7 N 1.34775 * 119.99776 * 353.77082 * 5 4 3 8 8 C 1.46502 * 119.99907 * 183.56385 * 7 5 4 9 9 C 1.50697 * 109.46989 * 269.72478 * 8 7 5 10 10 H 1.08001 * 120.00291 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99917 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99808 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00054 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.46938 * 90.00095 * 13 11 9 15 15 H 1.48497 * 109.47036 * 210.00096 * 13 11 9 16 16 H 1.48495 * 109.46920 * 330.00272 * 13 11 9 17 17 C 1.46503 * 120.00147 * 3.28667 * 7 5 4 18 18 C 1.53000 * 109.47229 * 267.87978 * 17 7 5 19 19 C 1.52999 * 109.47113 * 53.88474 * 18 17 7 20 20 C 1.52999 * 109.47338 * 173.88138 * 18 17 7 21 21 C 1.52992 * 109.47106 * 293.88465 * 18 17 7 22 22 C 1.36092 * 107.10072 * 0.26368 * 4 3 2 23 23 C 1.50703 * 126.52608 * 179.74081 * 22 4 3 24 24 O 1.34057 * 125.37943 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46985 * 89.99825 * 1 2 3 26 26 H 1.09003 * 109.46996 * 209.99476 * 1 2 3 27 27 H 1.08993 * 109.46835 * 329.99869 * 1 2 3 28 28 H 1.09004 * 109.47062 * 29.72437 * 8 7 5 29 29 H 1.09001 * 109.46796 * 149.72484 * 8 7 5 30 30 H 0.96997 * 119.99954 * 179.97438 * 12 11 9 31 31 H 1.08997 * 109.47212 * 27.87864 * 17 7 5 32 32 H 1.09003 * 109.47370 * 147.87691 * 17 7 5 33 33 H 1.09004 * 109.47305 * 68.26951 * 19 18 17 34 34 H 1.09002 * 109.47146 * 188.27191 * 19 18 17 35 35 H 1.09005 * 109.47514 * 308.26871 * 19 18 17 36 36 H 1.09005 * 109.46784 * 59.99791 * 20 18 17 37 37 H 1.08991 * 109.47406 * 179.97438 * 20 18 17 38 38 H 1.09003 * 109.47286 * 300.00446 * 20 18 17 39 39 H 1.09004 * 109.47307 * 59.99876 * 21 18 17 40 40 H 1.09001 * 109.47509 * 180.02562 * 21 18 17 41 41 H 1.09002 * 109.47223 * 299.99768 * 21 18 17 42 42 H 1.09007 * 109.47067 * 89.99809 * 23 22 4 43 43 H 1.09001 * 109.47036 * 209.99587 * 23 22 4 44 44 H 1.08993 * 109.46564 * 330.00096 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7440 1.5439 0.0013 6 8 5.8566 1.0668 0.1160 7 7 4.5921 2.8770 -0.1252 8 6 5.7701 3.7444 -0.2030 9 6 6.1650 4.1809 1.1843 10 1 5.5952 3.8461 2.0385 11 6 7.2532 5.0086 1.3630 12 7 7.5975 5.3899 2.5736 13 14 8.2383 5.5882 -0.1144 14 1 7.6668 6.8614 -0.6218 15 1 9.6514 5.8052 0.2871 16 1 8.1799 4.5589 -1.1831 17 6 3.2489 3.4583 -0.1910 18 6 2.8145 3.5745 -1.6534 19 6 2.9467 2.2110 -2.3347 20 6 1.3577 4.0375 -1.7176 21 6 3.7048 4.5913 -2.3705 22 6 3.5660 -0.6970 -0.0051 23 6 4.7802 -1.5897 -0.0122 24 8 2.2831 -1.0930 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 6.5946 3.1973 -0.6602 29 1 5.5365 4.6211 -0.8071 30 1 8.3632 5.9718 2.6994 31 1 2.5491 2.8179 0.3460 32 1 3.2586 4.4483 0.2650 33 1 2.2075 1.5249 -1.9211 34 1 2.7798 2.3223 -3.4060 35 1 3.9472 1.8140 -2.1623 36 1 1.2635 5.0089 -1.2322 37 1 1.0484 4.1207 -2.7594 38 1 0.7234 3.3131 -1.2066 39 1 4.7428 4.2615 -2.3249 40 1 3.3952 4.6745 -3.4123 41 1 3.6106 5.5628 -1.8852 42 1 5.0758 -1.8091 1.0138 43 1 4.5442 -2.5199 -0.5291 44 1 5.5985 -1.0857 -0.5262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293112981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = -2.639689 kcal Electronic energy + Delta-G solvation = -25695.469715 eV Core-core repulsion = 22229.461899 eV Total energy + Delta-G solvation = -3466.007816 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.36682 -39.36508 -37.00411 -34.77870 -33.93393 -32.90266 -32.25859 -30.12295 -28.61312 -27.01374 -26.84236 -26.19376 -25.17298 -23.39000 -22.03588 -20.89164 -19.27270 -18.44773 -17.08663 -16.85026 -16.64447 -15.62452 -15.39868 -14.94703 -14.21061 -14.13057 -13.94693 -13.76139 -13.58677 -13.40567 -13.26070 -12.82046 -12.74674 -12.68935 -12.37588 -12.25866 -12.13148 -11.93498 -11.63131 -11.51338 -11.36340 -11.07666 -10.85205 -10.68009 -10.49677 -10.34594 -10.20109 -9.98320 -9.64562 -9.42388 -9.14671 -8.58974 -8.53385 -7.55566 -6.03558 -4.01198 1.32041 2.23918 2.58069 3.29869 3.37583 3.41778 3.71679 3.90158 4.07195 4.43735 4.75780 4.93840 5.06526 5.17979 5.20820 5.22021 5.29118 5.38425 5.38982 5.44552 5.58475 5.65087 5.87154 5.88521 5.92207 5.97751 6.03299 6.12381 6.15402 6.18542 6.21378 6.33536 6.36537 6.50615 6.61422 6.72313 6.84841 6.88273 7.00558 7.45458 7.64858 7.67658 8.32840 8.52012 8.94628 9.02830 9.56862 11.10084 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.005999 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.416476 B = 4666.361282 C = 5579.065719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.172 3.828 3 N -0.438 5.438 4 C -0.052 4.052 5 C 0.589 3.411 6 O -0.537 6.537 7 N -0.567 5.567 8 C 0.212 3.788 9 C -0.524 4.524 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.871 3.129 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.264 1.264 17 C 0.101 3.899 18 C -0.074 4.074 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.149 4.149 22 C 0.023 3.977 23 C -0.070 4.070 24 O -0.202 6.202 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.648 -10.334 -9.158 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 N -0.170 5.170 4 C -0.172 4.172 5 C 0.375 3.625 6 O -0.415 6.415 7 N -0.296 5.296 8 C 0.092 3.908 9 C -0.562 4.562 10 H 0.092 0.908 11 C -0.129 4.129 12 N -0.537 5.537 13 Si 0.698 3.302 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.188 1.188 17 C -0.022 4.022 18 C -0.075 4.075 19 C -0.196 4.196 20 C -0.188 4.188 21 C -0.206 4.206 22 C -0.033 4.033 23 C -0.127 4.127 24 O -0.090 6.090 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.134 -9.840 -8.990 20.166 hybrid contribution 0.792 -0.094 -0.626 1.013 sum -14.342 -9.934 -9.615 19.921 Atomic orbital electron populations 1.20237 0.81406 1.05049 1.04480 1.26315 0.96436 0.78817 1.02003 1.70939 1.01123 1.28212 1.16695 1.21796 0.92196 0.92278 1.10940 1.16698 0.85723 0.82124 0.77963 1.90754 1.24622 1.74845 1.51301 1.47643 1.08168 1.05070 1.68677 1.19847 0.83428 0.89273 0.98292 1.21335 1.13577 1.29199 0.92119 0.90762 1.24834 0.96704 0.95755 0.95653 1.69899 1.27486 1.35527 1.20822 0.86909 0.80034 0.79512 0.83718 1.20067 1.20962 1.18844 1.22175 0.84243 1.00493 0.95327 1.20773 0.95100 0.95180 0.96488 1.22117 1.01768 0.97192 0.98532 1.21724 0.95381 1.00913 1.00829 1.22079 1.00589 0.98860 0.99051 1.23622 0.83546 0.94645 1.01447 1.20509 0.90386 0.97217 1.04571 1.84264 1.16488 1.37901 1.70350 0.89144 0.89592 0.88043 0.94415 0.94694 0.92650 0.86554 0.90931 0.91766 0.94240 0.93239 0.92889 0.93392 0.92412 0.91866 0.93673 0.92599 0.89190 0.90749 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.38 10.51 36.00 0.38 0.00 16 2 C 0.17 2.12 7.94 -13.08 -0.10 2.02 16 3 N -0.44 -6.68 5.18 -7.65 -0.04 -6.72 16 4 C -0.05 -0.93 5.09 -83.02 -0.42 -1.36 16 5 C 0.59 12.88 6.13 -12.52 -0.08 12.80 16 6 O -0.54 -13.19 14.50 5.27 0.08 -13.11 16 7 N -0.57 -12.46 1.95 -176.33 -0.34 -12.80 16 8 C 0.21 5.31 3.33 -5.19 -0.02 5.29 16 9 C -0.52 -15.40 9.94 -34.44 -0.34 -15.74 16 10 H 0.07 2.42 8.06 -52.49 -0.42 1.99 16 11 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 12 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 13 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 17 C 0.10 1.86 4.40 -4.04 -0.02 1.84 16 18 C -0.07 -1.13 0.81 -154.51 -0.13 -1.26 16 19 C -0.14 -2.12 6.88 37.16 0.26 -1.86 16 20 C -0.13 -1.61 8.47 37.16 0.31 -1.29 16 21 C -0.15 -2.35 7.47 37.15 0.28 -2.07 16 22 C 0.02 0.35 7.44 -35.08 -0.26 0.09 16 23 C -0.07 -0.91 9.82 36.01 0.35 -0.55 16 24 O -0.20 -2.72 10.73 6.48 0.07 -2.65 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 1.01 6.52 -51.93 -0.34 0.67 16 29 H 0.04 0.83 5.10 -51.93 -0.27 0.56 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.12 2.06 4.79 -51.95 -0.25 1.81 16 32 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 33 H 0.06 0.94 5.17 -51.93 -0.27 0.67 16 34 H 0.04 0.54 8.13 -51.93 -0.42 0.12 16 35 H 0.05 0.88 5.55 -51.93 -0.29 0.59 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.14 5.69 -51.93 -0.30 0.84 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.11 1.62 6.64 -51.93 -0.34 1.28 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -34.39 341.71 -5.58 -39.97 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.71 Total: 0.42 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 0.11 Total: -0.05 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.39 Total: -46.89 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.15 Total: -15.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.39 -5.58 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293112981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.328 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds