Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29937 * 125.37791 * 2 1 4 4 C 1.36074 * 108.47832 * 179.97438 * 3 2 1 5 5 C 1.47420 * 126.45104 * 180.02562 * 4 3 2 6 6 O 1.21603 * 119.99907 * 173.77250 * 5 4 3 7 7 N 1.34775 * 119.99776 * 353.77082 * 5 4 3 8 8 C 1.46502 * 119.99907 * 183.56385 * 7 5 4 9 9 C 1.50697 * 109.46989 * 269.72478 * 8 7 5 10 10 H 1.08001 * 120.00291 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99917 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99808 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00054 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.46938 * 90.00095 * 13 11 9 15 15 H 1.48497 * 109.47036 * 210.00096 * 13 11 9 16 16 H 1.48495 * 109.46920 * 330.00272 * 13 11 9 17 17 C 1.46503 * 120.00147 * 3.28667 * 7 5 4 18 18 C 1.53000 * 109.47229 * 267.87978 * 17 7 5 19 19 C 1.52999 * 109.47113 * 53.88474 * 18 17 7 20 20 C 1.52999 * 109.47338 * 173.88138 * 18 17 7 21 21 C 1.52992 * 109.47106 * 293.88465 * 18 17 7 22 22 C 1.36092 * 107.10072 * 0.26368 * 4 3 2 23 23 C 1.50703 * 126.52608 * 179.74081 * 22 4 3 24 24 O 1.34057 * 125.37943 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46985 * 89.99825 * 1 2 3 26 26 H 1.09003 * 109.46996 * 209.99476 * 1 2 3 27 27 H 1.08993 * 109.46835 * 329.99869 * 1 2 3 28 28 H 1.09004 * 109.47062 * 29.72437 * 8 7 5 29 29 H 1.09001 * 109.46796 * 149.72484 * 8 7 5 30 30 H 0.96997 * 119.99954 * 179.97438 * 12 11 9 31 31 H 1.08997 * 109.47212 * 27.87864 * 17 7 5 32 32 H 1.09003 * 109.47370 * 147.87691 * 17 7 5 33 33 H 1.09004 * 109.47305 * 68.26951 * 19 18 17 34 34 H 1.09002 * 109.47146 * 188.27191 * 19 18 17 35 35 H 1.09005 * 109.47514 * 308.26871 * 19 18 17 36 36 H 1.09005 * 109.46784 * 59.99791 * 20 18 17 37 37 H 1.08991 * 109.47406 * 179.97438 * 20 18 17 38 38 H 1.09003 * 109.47286 * 300.00446 * 20 18 17 39 39 H 1.09004 * 109.47307 * 59.99876 * 21 18 17 40 40 H 1.09001 * 109.47509 * 180.02562 * 21 18 17 41 41 H 1.09002 * 109.47223 * 299.99768 * 21 18 17 42 42 H 1.09007 * 109.47067 * 89.99809 * 23 22 4 43 43 H 1.09001 * 109.47036 * 209.99587 * 23 22 4 44 44 H 1.08993 * 109.46564 * 330.00096 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6639 0.0006 5 6 4.7440 1.5439 0.0013 6 8 5.8566 1.0668 0.1160 7 7 4.5921 2.8770 -0.1252 8 6 5.7701 3.7444 -0.2030 9 6 6.1650 4.1809 1.1843 10 1 5.5952 3.8461 2.0385 11 6 7.2532 5.0086 1.3630 12 7 7.5975 5.3899 2.5736 13 14 8.2383 5.5882 -0.1144 14 1 7.6668 6.8614 -0.6218 15 1 9.6514 5.8052 0.2871 16 1 8.1799 4.5589 -1.1831 17 6 3.2489 3.4583 -0.1910 18 6 2.8145 3.5745 -1.6534 19 6 2.9467 2.2110 -2.3347 20 6 1.3577 4.0375 -1.7176 21 6 3.7048 4.5913 -2.3705 22 6 3.5660 -0.6970 -0.0051 23 6 4.7802 -1.5897 -0.0122 24 8 2.2831 -1.0930 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 6.5946 3.1973 -0.6602 29 1 5.5365 4.6211 -0.8071 30 1 8.3632 5.9718 2.6994 31 1 2.5491 2.8179 0.3460 32 1 3.2586 4.4483 0.2650 33 1 2.2075 1.5249 -1.9211 34 1 2.7798 2.3223 -3.4060 35 1 3.9472 1.8140 -2.1623 36 1 1.2635 5.0089 -1.2322 37 1 1.0484 4.1207 -2.7594 38 1 0.7234 3.3131 -1.2066 39 1 4.7428 4.2615 -2.3249 40 1 3.3952 4.6745 -3.4123 41 1 3.6106 5.5628 -1.8852 42 1 5.0758 -1.8091 1.0138 43 1 4.5442 -2.5199 -0.5291 44 1 5.5985 -1.0857 -0.5262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293112981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = -25.700741 kcal Electronic energy + Delta-G solvation = -25696.469717 eV Core-core repulsion = 22229.461899 eV Total energy + Delta-G solvation = -3467.007818 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.50172 -40.95974 -38.48342 -36.01216 -35.63900 -34.36130 -33.97420 -31.05845 -30.44797 -28.23808 -28.08193 -27.43972 -26.66069 -24.95469 -23.46932 -22.22692 -20.71095 -19.73427 -19.18708 -18.17013 -18.05222 -17.21872 -16.79733 -16.60023 -15.89201 -15.39612 -15.13662 -15.08492 -14.86440 -14.67833 -14.53923 -14.28349 -14.03694 -13.76535 -13.54070 -13.51980 -13.36865 -13.18948 -13.06163 -12.88551 -12.73014 -12.61862 -12.41028 -12.27869 -11.95283 -11.77482 -11.68359 -11.62721 -11.48714 -11.09082 -10.82235 -10.67802 -9.78597 -9.28777 -8.35601 -6.40272 0.10515 1.06347 1.28923 1.32971 1.44087 1.52185 2.20188 2.29093 2.33828 2.95244 2.99065 3.61675 3.70319 3.96304 3.99666 4.17110 4.19010 4.36936 4.54887 4.59383 4.63653 4.66781 4.73320 4.74580 4.75843 4.81909 4.86585 4.88492 4.94440 4.97040 5.05007 5.11003 5.11866 5.17428 5.24761 5.37337 5.43167 5.44647 5.49300 5.63033 5.75982 6.21670 6.48006 6.59772 6.69972 7.16623 7.31850 8.81866 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.005999 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.416476 B = 4666.361282 C = 5579.065719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.192 3.808 3 N -0.460 5.460 4 C -0.084 4.084 5 C 0.581 3.419 6 O -0.580 6.580 7 N -0.576 5.576 8 C 0.227 3.773 9 C -0.535 4.535 10 H 0.023 0.977 11 C 0.014 3.986 12 N -0.944 5.944 13 Si 0.944 3.056 14 H -0.251 1.251 15 H -0.277 1.277 16 H -0.256 1.256 17 C 0.100 3.900 18 C -0.069 4.069 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.149 4.149 22 C 0.032 3.968 23 C -0.070 4.070 24 O -0.195 6.195 25 H 0.116 0.884 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.269 0.731 31 H 0.125 0.875 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.292 -11.001 -11.524 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.016 4.016 3 N -0.191 5.191 4 C -0.202 4.202 5 C 0.370 3.630 6 O -0.461 6.461 7 N -0.303 5.303 8 C 0.105 3.895 9 C -0.574 4.574 10 H 0.042 0.958 11 C -0.184 4.184 12 N -0.585 5.585 13 Si 0.767 3.233 14 H -0.175 1.175 15 H -0.203 1.203 16 H -0.180 1.180 17 C -0.023 4.023 18 C -0.070 4.070 19 C -0.186 4.186 20 C -0.181 4.181 21 C -0.206 4.206 22 C -0.025 4.025 23 C -0.126 4.126 24 O -0.083 6.083 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.129 0.871 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.827 -10.491 -11.360 23.599 hybrid contribution 1.491 0.020 0.220 1.508 sum -16.335 -10.471 -11.140 22.374 Atomic orbital electron populations 1.20638 0.77155 1.06772 1.06622 1.27498 0.98109 0.77637 0.98381 1.70788 1.00075 1.29529 1.18710 1.21229 0.92050 0.92594 1.14367 1.17251 0.86703 0.82336 0.76734 1.90704 1.26664 1.75610 1.53159 1.47692 1.08562 1.05228 1.68845 1.19474 0.84473 0.90024 0.95525 1.21518 1.13587 1.29499 0.92756 0.95847 1.25814 0.97756 0.95645 0.99169 1.70051 1.28409 1.36492 1.23503 0.85759 0.78243 0.79898 0.79438 1.17469 1.20257 1.18009 1.22387 0.82609 0.99263 0.98011 1.20752 0.97071 0.95404 0.93820 1.22018 1.00111 0.96960 0.99545 1.21668 0.92849 1.01191 1.02377 1.22073 0.99088 0.98727 1.00744 1.23880 0.84837 0.94046 0.99688 1.20552 0.88932 0.98098 1.05039 1.84321 1.15603 1.38113 1.70271 0.86558 0.87200 0.86939 0.96362 0.92863 0.92196 0.85759 0.92828 0.90908 0.92527 0.96448 0.92723 0.91381 0.91224 0.94661 0.91129 0.92781 0.88733 0.87062 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 71.23 0.75 0.23 16 2 C 0.19 4.19 7.94 88.39 0.70 4.89 16 3 N -0.46 -13.46 5.18 -293.02 -1.52 -14.98 16 4 C -0.08 -3.04 5.09 40.41 0.21 -2.84 16 5 C 0.58 26.73 6.13 86.66 0.53 27.26 16 6 O -0.58 -30.36 14.50 -4.04 -0.06 -30.42 16 7 N -0.58 -26.49 1.95 -830.04 -1.62 -28.10 16 8 C 0.23 11.87 3.33 85.63 0.29 12.15 16 9 C -0.54 -33.25 9.94 25.60 0.25 -32.99 16 10 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 11 C 0.01 0.87 5.47 84.65 0.46 1.33 16 12 N -0.94 -61.41 13.96 21.45 0.30 -61.11 16 13 Si 0.94 45.88 27.47 68.60 1.88 47.76 16 14 H -0.25 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.26 -12.04 6.54 99.48 0.65 -11.39 16 17 C 0.10 3.72 4.40 86.38 0.38 4.10 16 18 C -0.07 -2.03 0.81 -52.18 -0.04 -2.08 16 19 C -0.13 -3.75 6.88 71.98 0.50 -3.25 16 20 C -0.12 -2.66 8.47 71.98 0.61 -2.05 16 21 C -0.15 -4.54 7.47 71.98 0.54 -4.00 16 22 C 0.03 0.96 7.44 25.19 0.19 1.15 16 23 C -0.07 -1.78 9.82 71.24 0.70 -1.08 16 24 O -0.19 -4.76 10.73 0.27 0.00 -4.76 16 25 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.02 1.02 6.52 -2.39 -0.02 1.01 16 29 H 0.05 2.58 5.10 -2.39 -0.01 2.57 16 30 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 31 H 0.13 4.44 4.79 -2.43 -0.01 4.43 16 32 H 0.05 2.15 8.09 -2.39 -0.02 2.13 16 33 H 0.07 1.96 5.17 -2.39 -0.01 1.95 16 34 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 35 H 0.02 0.60 5.55 -2.38 -0.01 0.59 16 36 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.03 1.25 5.69 -2.38 -0.01 1.24 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.09 2.69 6.64 -2.39 -0.02 2.68 16 Total: -1.00 -80.71 341.71 5.99 -74.72 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.94 Total: 14.06 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 6.06 Total: 2.83 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -2.84 Total: -104.19 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.06 Total: -35.18 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.76 kcal Total: -80.71 5.99 -74.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293112981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.017 kcal (2) G-P(sol) polarization free energy of solvation -80.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds