Wall clock time and date at job start Tue Mar 31 2020 07:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47071 * 2 1 4 4 C 1.53002 * 109.47056 * 172.53076 * 3 2 1 5 5 C 1.53005 * 109.46987 * 52.53027 * 3 2 1 6 6 N 1.46497 * 109.46842 * 292.53344 * 3 2 1 7 7 C 1.46494 * 120.00187 * 118.55095 * 6 3 2 8 8 C 1.50700 * 109.47253 * 263.51845 * 7 6 3 9 9 H 1.08000 * 120.00097 * 4.24368 * 8 7 6 10 10 C 1.37883 * 119.99826 * 184.23917 * 8 7 6 11 11 N 1.31514 * 120.00239 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99812 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47005 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46931 * 120.00228 * 12 10 8 15 15 H 1.48494 * 109.47204 * 240.00434 * 12 10 8 16 16 C 1.34780 * 120.00144 * 298.54701 * 6 3 2 17 17 O 1.21610 * 120.00322 * 183.58272 * 16 6 3 18 18 C 1.47420 * 119.99616 * 3.58436 * 16 6 3 19 19 N 1.36073 * 126.45129 * 354.20152 * 18 16 6 20 20 C 1.29930 * 108.47709 * 180.02562 * 19 18 16 21 21 C 1.50704 * 125.37958 * 179.97438 * 20 19 18 22 22 O 1.34050 * 109.24603 * 359.97438 * 20 19 18 23 23 C 1.34259 * 108.22821 * 0.02562 * 22 20 19 24 24 C 1.50693 * 126.52746 * 179.97438 * 23 22 20 25 25 H 1.09006 * 109.46940 * 185.69145 * 1 2 3 26 26 H 1.08998 * 109.47485 * 305.69365 * 1 2 3 27 27 H 1.09005 * 109.46833 * 65.69761 * 1 2 3 28 28 H 1.08997 * 109.47333 * 239.99699 * 2 1 3 29 29 H 1.09006 * 109.46721 * 119.99604 * 2 1 3 30 30 H 1.08997 * 109.46751 * 205.93550 * 4 3 2 31 31 H 1.08996 * 109.46888 * 325.93699 * 4 3 2 32 32 H 1.08996 * 109.46684 * 85.93761 * 4 3 2 33 33 H 1.08993 * 109.47350 * 302.86661 * 5 3 2 34 34 H 1.08998 * 109.46670 * 62.86525 * 5 3 2 35 35 H 1.08994 * 109.46656 * 182.86436 * 5 3 2 36 36 H 1.09007 * 109.47034 * 23.52052 * 7 6 3 37 37 H 1.09004 * 109.47720 * 143.51244 * 7 6 3 38 38 H 0.96995 * 120.00098 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.46830 * 89.99533 * 21 20 19 40 40 H 1.08996 * 109.46980 * 209.99430 * 21 20 19 41 41 H 1.09002 * 109.46922 * 329.99731 * 21 20 19 42 42 H 1.09000 * 109.47235 * 270.02232 * 24 23 22 43 43 H 1.09003 * 109.47375 * 30.02505 * 24 23 22 44 44 H 1.09005 * 109.47453 * 150.01898 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5585 1.4466 0.1875 5 6 1.3826 2.2159 1.1449 6 7 1.7037 2.0793 -1.2758 7 6 0.8287 3.2540 -1.3000 8 6 -0.5852 2.8213 -1.5912 9 1 -0.8220 1.7709 -1.6751 10 6 -1.5764 3.7664 -1.7504 11 7 -1.2880 5.0455 -1.6486 12 14 -3.3289 3.2301 -2.1121 13 1 -3.3894 1.7477 -2.1771 14 1 -4.2274 3.7149 -1.0338 15 1 -3.7630 3.8011 -3.4123 16 6 2.1994 1.5845 -2.4273 17 8 1.9738 2.1508 -3.4795 18 6 3.0151 0.3567 -2.4112 19 7 3.4392 -0.3178 -1.3081 20 6 4.1321 -1.3464 -1.6954 21 6 4.7827 -2.3540 -0.7828 22 8 4.1768 -1.3700 -3.0349 23 6 3.4859 -0.3155 -3.4968 24 6 3.2726 0.0536 -4.9422 25 1 -0.3633 -1.0227 0.1019 26 1 -0.3634 0.5996 0.8346 27 1 -0.3633 0.4230 -0.9367 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8664 2.3904 0.6376 31 1 3.8462 0.6220 0.8396 32 1 4.0444 1.3305 -0.7812 33 1 0.2988 2.1699 1.0393 34 1 1.6740 1.7726 2.0971 35 1 1.7069 3.2560 1.1140 36 1 0.8638 3.7532 -0.3316 37 1 1.1652 3.9420 -2.0756 38 1 -1.9852 5.7103 -1.7610 39 1 4.0840 -3.1660 -0.5814 40 1 5.6764 -2.7540 -1.2617 41 1 5.0581 -1.8706 0.1545 42 1 4.0770 0.7112 -5.2718 43 1 3.2695 -0.8503 -5.5514 44 1 2.3169 0.5668 -5.0490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298110902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:52 Heat of formation + Delta-G solvation = 41.565914 kcal Electronic energy + Delta-G solvation = -26130.349249 eV Core-core repulsion = 22666.258332 eV Total energy + Delta-G solvation = -3464.090917 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.39047 -39.49091 -36.80858 -34.86269 -33.12340 -32.70654 -31.66202 -30.09304 -29.70805 -28.21547 -26.27366 -25.69510 -23.34953 -23.04417 -21.93627 -21.40603 -20.14261 -18.11538 -17.00691 -16.68324 -16.19061 -15.35061 -15.23365 -14.49197 -14.34279 -14.15683 -13.95635 -13.84974 -13.49263 -13.14519 -13.08243 -12.73279 -12.68867 -12.62715 -12.30247 -12.11757 -11.98145 -11.80838 -11.48683 -11.25866 -11.03329 -10.89551 -10.61421 -10.30546 -10.28457 -10.23203 -9.90605 -9.69869 -9.26976 -9.11471 -8.88539 -8.51027 -8.35095 -7.48375 -5.97372 -4.00157 1.39179 2.30069 2.68110 3.32915 3.40698 3.44299 3.81365 3.98863 4.17604 4.49974 4.82590 5.01363 5.13296 5.24426 5.36695 5.39894 5.43949 5.48011 5.62069 5.64212 5.70315 5.74470 5.96868 6.03047 6.10893 6.18213 6.24885 6.30516 6.34330 6.38264 6.52876 6.55748 6.70313 6.83404 6.95024 6.96942 7.15942 7.20745 7.56495 7.63925 7.78119 8.03139 8.31813 8.53017 8.97873 9.15313 9.63878 11.10718 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.006035 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.185518 B = 4638.157810 C = 5210.184300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C 0.178 3.822 4 C -0.131 4.131 5 C -0.152 4.152 6 N -0.569 5.569 7 C 0.239 3.761 8 C -0.518 4.518 9 H 0.066 0.934 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.892 3.108 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.587 3.413 17 O -0.535 6.535 18 C -0.071 4.071 19 N -0.411 5.411 20 C 0.144 3.856 21 C -0.051 4.051 22 O -0.206 6.206 23 C 0.029 3.971 24 C -0.071 4.071 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.929 -13.742 2.671 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C 0.092 3.908 4 C -0.189 4.189 5 C -0.209 4.209 6 N -0.299 5.299 7 C 0.121 3.879 8 C -0.556 4.556 9 H 0.084 0.916 10 C -0.140 4.140 11 N -0.535 5.535 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.373 3.627 17 O -0.414 6.414 18 C -0.189 4.189 19 N -0.144 5.144 20 C -0.062 4.062 21 C -0.108 4.108 22 O -0.094 6.094 23 C -0.027 4.027 24 C -0.128 4.128 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.600 -13.083 2.757 17.701 hybrid contribution -0.937 -0.478 -0.704 1.266 sum 10.663 -13.561 2.053 17.373 Atomic orbital electron populations 1.22199 0.96486 0.99521 1.04157 1.22510 0.94865 0.96208 1.02842 1.20256 0.93933 0.92547 0.84043 1.22361 0.95357 0.99282 1.01869 1.22206 1.03032 0.99686 0.95966 1.48212 1.46751 1.30742 1.04221 1.19449 0.87860 0.82052 0.98581 1.21614 0.92584 0.93392 1.48035 0.91593 1.24902 0.98889 0.94798 0.95425 1.69942 1.33211 0.99912 1.50411 0.86541 0.84851 0.78750 0.77895 1.19844 1.21100 1.21018 1.16584 0.79420 0.81990 0.84755 1.90746 1.60633 1.59589 1.30405 1.21918 1.07335 1.01506 0.88131 1.72061 1.09407 1.04477 1.28438 1.26381 1.01405 0.99224 0.79227 1.20168 0.99934 0.94680 0.96023 1.84247 1.58528 1.42614 1.24046 1.23641 0.94424 0.86420 0.98175 1.20522 1.05709 1.01870 0.84678 0.94885 0.92444 0.90671 0.88659 0.92735 0.94779 0.92304 0.91571 0.90047 0.92900 0.92191 0.93877 0.94181 0.92952 0.89403 0.89837 0.88315 0.89375 0.90784 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.30 37.16 0.35 -2.74 16 2 C -0.13 -2.17 4.07 -26.73 -0.11 -2.28 16 3 C 0.18 3.26 0.74 -131.81 -0.10 3.16 16 4 C -0.13 -2.12 7.53 37.16 0.28 -1.84 16 5 C -0.15 -2.71 6.57 37.16 0.24 -2.47 16 6 N -0.57 -12.65 2.09 -161.43 -0.34 -12.99 16 7 C 0.24 6.23 4.52 -5.20 -0.02 6.21 16 8 C -0.52 -14.35 8.91 -34.44 -0.31 -14.66 16 9 H 0.07 1.83 4.97 -52.49 -0.26 1.57 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.59 13.12 6.99 -12.52 -0.09 13.03 16 17 O -0.54 -13.45 14.54 5.27 0.08 -13.37 16 18 C -0.07 -1.30 4.77 -83.02 -0.40 -1.69 16 19 N -0.41 -6.43 2.91 -7.65 -0.02 -6.45 16 20 C 0.14 1.86 8.30 -13.08 -0.11 1.76 16 21 C -0.05 -0.38 10.51 36.01 0.38 -0.01 16 22 O -0.21 -2.90 10.73 6.51 0.07 -2.83 16 23 C 0.03 0.46 7.44 -35.08 -0.26 0.20 16 24 C -0.07 -0.96 9.82 36.00 0.35 -0.61 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.05 5.92 -51.93 -0.31 0.74 16 27 H 0.07 1.65 4.89 -51.93 -0.25 1.40 16 28 H 0.10 1.72 3.74 -90.45 -0.34 1.39 16 29 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 30 H 0.03 0.54 7.90 -51.93 -0.41 0.13 16 31 H 0.06 0.82 7.57 -51.93 -0.39 0.43 16 32 H 0.07 1.16 4.62 -51.93 -0.24 0.92 16 33 H 0.08 1.62 5.59 -51.93 -0.29 1.33 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.11 6.82 -51.93 -0.35 0.76 16 36 H 0.04 1.12 5.41 -51.93 -0.28 0.84 16 37 H 0.04 1.19 7.57 -51.93 -0.39 0.79 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.11 1.79 6.62 -51.93 -0.34 1.45 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -32.31 334.18 -5.72 -38.03 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.37 Total: 1.71 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.11 Total: -0.30 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.38 Total: -45.19 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.15 Total: -16.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.31 -5.72 -38.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298110902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.596 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds