Wall clock time and date at job start Tue Mar 31 2020 07:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47071 * 2 1 4 4 C 1.53002 * 109.47056 * 172.53076 * 3 2 1 5 5 C 1.53005 * 109.46987 * 52.53027 * 3 2 1 6 6 N 1.46497 * 109.46842 * 292.53344 * 3 2 1 7 7 C 1.46494 * 120.00187 * 118.55095 * 6 3 2 8 8 C 1.50700 * 109.47253 * 263.51845 * 7 6 3 9 9 H 1.08000 * 120.00097 * 4.24368 * 8 7 6 10 10 C 1.37883 * 119.99826 * 184.23917 * 8 7 6 11 11 N 1.31514 * 120.00239 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99812 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47005 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46931 * 120.00228 * 12 10 8 15 15 H 1.48494 * 109.47204 * 240.00434 * 12 10 8 16 16 C 1.34780 * 120.00144 * 298.54701 * 6 3 2 17 17 O 1.21610 * 120.00322 * 183.58272 * 16 6 3 18 18 C 1.47420 * 119.99616 * 3.58436 * 16 6 3 19 19 N 1.36073 * 126.45129 * 354.20152 * 18 16 6 20 20 C 1.29930 * 108.47709 * 180.02562 * 19 18 16 21 21 C 1.50704 * 125.37958 * 179.97438 * 20 19 18 22 22 O 1.34050 * 109.24603 * 359.97438 * 20 19 18 23 23 C 1.34259 * 108.22821 * 0.02562 * 22 20 19 24 24 C 1.50693 * 126.52746 * 179.97438 * 23 22 20 25 25 H 1.09006 * 109.46940 * 185.69145 * 1 2 3 26 26 H 1.08998 * 109.47485 * 305.69365 * 1 2 3 27 27 H 1.09005 * 109.46833 * 65.69761 * 1 2 3 28 28 H 1.08997 * 109.47333 * 239.99699 * 2 1 3 29 29 H 1.09006 * 109.46721 * 119.99604 * 2 1 3 30 30 H 1.08997 * 109.46751 * 205.93550 * 4 3 2 31 31 H 1.08996 * 109.46888 * 325.93699 * 4 3 2 32 32 H 1.08996 * 109.46684 * 85.93761 * 4 3 2 33 33 H 1.08993 * 109.47350 * 302.86661 * 5 3 2 34 34 H 1.08998 * 109.46670 * 62.86525 * 5 3 2 35 35 H 1.08994 * 109.46656 * 182.86436 * 5 3 2 36 36 H 1.09007 * 109.47034 * 23.52052 * 7 6 3 37 37 H 1.09004 * 109.47720 * 143.51244 * 7 6 3 38 38 H 0.96995 * 120.00098 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.46830 * 89.99533 * 21 20 19 40 40 H 1.08996 * 109.46980 * 209.99430 * 21 20 19 41 41 H 1.09002 * 109.46922 * 329.99731 * 21 20 19 42 42 H 1.09000 * 109.47235 * 270.02232 * 24 23 22 43 43 H 1.09003 * 109.47375 * 30.02505 * 24 23 22 44 44 H 1.09005 * 109.47453 * 150.01898 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5585 1.4466 0.1875 5 6 1.3826 2.2159 1.1449 6 7 1.7037 2.0793 -1.2758 7 6 0.8287 3.2540 -1.3000 8 6 -0.5852 2.8213 -1.5912 9 1 -0.8220 1.7709 -1.6751 10 6 -1.5764 3.7664 -1.7504 11 7 -1.2880 5.0455 -1.6486 12 14 -3.3289 3.2301 -2.1121 13 1 -3.3894 1.7477 -2.1771 14 1 -4.2274 3.7149 -1.0338 15 1 -3.7630 3.8011 -3.4123 16 6 2.1994 1.5845 -2.4273 17 8 1.9738 2.1508 -3.4795 18 6 3.0151 0.3567 -2.4112 19 7 3.4392 -0.3178 -1.3081 20 6 4.1321 -1.3464 -1.6954 21 6 4.7827 -2.3540 -0.7828 22 8 4.1768 -1.3700 -3.0349 23 6 3.4859 -0.3155 -3.4968 24 6 3.2726 0.0536 -4.9422 25 1 -0.3633 -1.0227 0.1019 26 1 -0.3634 0.5996 0.8346 27 1 -0.3633 0.4230 -0.9367 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8664 2.3904 0.6376 31 1 3.8462 0.6220 0.8396 32 1 4.0444 1.3305 -0.7812 33 1 0.2988 2.1699 1.0393 34 1 1.6740 1.7726 2.0971 35 1 1.7069 3.2560 1.1140 36 1 0.8638 3.7532 -0.3316 37 1 1.1652 3.9420 -2.0756 38 1 -1.9852 5.7103 -1.7610 39 1 4.0840 -3.1660 -0.5814 40 1 5.6764 -2.7540 -1.2617 41 1 5.0581 -1.8706 0.1545 42 1 4.0770 0.7112 -5.2718 43 1 3.2695 -0.8503 -5.5514 44 1 2.3169 0.5668 -5.0490 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298110902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:52 Heat of formation + Delta-G solvation = 21.407834 kcal Electronic energy + Delta-G solvation = -26131.223369 eV Core-core repulsion = 22666.258332 eV Total energy + Delta-G solvation = -3464.965037 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.56237 -41.09514 -38.44993 -36.17715 -34.98688 -33.92219 -33.42468 -31.21053 -31.00807 -29.89766 -27.83824 -27.08286 -24.97702 -24.43994 -23.55508 -22.72873 -21.48386 -19.57334 -18.72554 -18.18110 -17.70018 -17.09828 -16.59972 -16.24356 -16.01569 -15.60654 -15.45213 -14.97745 -14.57152 -14.45559 -14.34255 -14.23285 -14.17169 -13.63175 -13.51448 -13.40173 -13.36147 -13.08531 -12.99775 -12.92395 -12.85807 -12.66171 -12.27053 -12.06024 -12.01580 -11.73943 -11.64075 -11.22350 -10.91951 -10.80193 -10.56738 -10.27396 -9.71467 -9.27369 -8.15762 -6.26672 0.14431 1.10942 1.35018 1.37115 1.48329 1.58575 2.21681 2.42264 2.45060 3.01504 3.14279 3.65797 3.73612 3.97016 4.21156 4.21766 4.31628 4.40564 4.55637 4.56439 4.74169 4.75434 4.76508 4.81279 4.84173 4.87821 4.96448 4.98989 5.03223 5.12406 5.15103 5.18681 5.25211 5.35925 5.37070 5.41439 5.52549 5.58727 5.71034 5.83198 5.98257 6.16435 6.53721 6.78447 6.88213 7.31464 7.47989 8.91690 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.006035 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.185518 B = 4638.157810 C = 5210.184300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.119 4.119 3 C 0.169 3.831 4 C -0.120 4.120 5 C -0.147 4.147 6 N -0.575 5.575 7 C 0.257 3.743 8 C -0.522 4.522 9 H 0.064 0.936 10 C 0.009 3.991 11 N -0.930 5.930 12 Si 0.956 3.044 13 H -0.269 1.269 14 H -0.272 1.272 15 H -0.283 1.283 16 C 0.577 3.423 17 O -0.581 6.581 18 C -0.101 4.101 19 N -0.428 5.428 20 C 0.164 3.836 21 C -0.051 4.051 22 O -0.199 6.199 23 C 0.037 3.963 24 C -0.071 4.071 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.039 0.961 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.153 -17.181 4.006 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.157 4.157 3 C 0.085 3.915 4 C -0.178 4.178 5 C -0.204 4.204 6 N -0.304 5.304 7 C 0.137 3.863 8 C -0.561 4.561 9 H 0.082 0.918 10 C -0.189 4.189 11 N -0.571 5.571 12 Si 0.782 3.218 13 H -0.194 1.194 14 H -0.197 1.197 15 H -0.209 1.209 16 C 0.365 3.635 17 O -0.463 6.463 18 C -0.217 4.217 19 N -0.159 5.159 20 C -0.044 4.044 21 C -0.108 4.108 22 O -0.088 6.088 23 C -0.020 4.020 24 C -0.127 4.127 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.836 -16.542 4.134 21.342 hybrid contribution -1.208 0.515 -1.104 1.716 sum 11.628 -16.027 3.030 20.031 Atomic orbital electron populations 1.22117 0.97831 1.00336 1.01640 1.22490 0.93541 0.95287 1.04352 1.20629 0.95653 0.93153 0.82060 1.22266 0.93210 1.00431 1.01853 1.22152 1.01320 0.99142 0.97776 1.48226 1.46141 1.29890 1.06147 1.18919 0.88066 0.83007 0.96344 1.21848 0.93457 0.93324 1.47466 0.91848 1.25737 1.03067 0.94819 0.95318 1.70063 1.34575 1.00971 1.51477 0.85529 0.79988 0.78444 0.77860 1.19371 1.19709 1.20947 1.17148 0.79326 0.83018 0.83967 1.90701 1.62449 1.61321 1.31835 1.21308 1.09014 1.01079 0.90319 1.71904 1.10977 1.05508 1.27528 1.27582 0.99083 0.98569 0.79123 1.20562 1.00924 0.93853 0.95488 1.84302 1.58039 1.41569 1.24872 1.23878 0.93407 0.86187 0.98508 1.20542 1.04502 1.03390 0.84243 0.92742 0.92726 0.94870 0.88873 0.89401 0.95050 0.89133 0.92800 0.92541 0.89118 0.93833 0.94367 0.99070 0.92751 0.87335 0.87432 0.86732 0.88172 0.87403 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.88 9.30 71.98 0.67 -5.21 16 2 C -0.12 -3.85 4.07 30.60 0.12 -3.73 16 3 C 0.17 6.11 0.74 3.61 0.00 6.12 16 4 C -0.12 -3.68 7.53 71.98 0.54 -3.14 16 5 C -0.15 -5.21 6.57 71.98 0.47 -4.74 16 6 N -0.57 -26.64 2.09 -782.89 -1.63 -28.28 16 7 C 0.26 14.29 4.52 85.63 0.39 14.68 16 8 C -0.52 -30.37 8.91 25.60 0.23 -30.14 16 9 H 0.06 3.68 4.97 -2.91 -0.01 3.67 16 10 C 0.01 0.51 5.46 84.66 0.46 0.98 16 11 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 12 Si 0.96 46.19 29.54 68.60 2.03 48.21 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 15 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 16 C 0.58 27.00 6.99 86.66 0.61 27.61 16 17 O -0.58 -31.27 14.54 -4.06 -0.06 -31.33 16 18 C -0.10 -3.67 4.77 40.41 0.19 -3.48 16 19 N -0.43 -12.37 2.91 -293.03 -0.85 -13.22 16 20 C 0.16 3.63 8.30 88.39 0.73 4.37 16 21 C -0.05 -0.50 10.51 71.24 0.75 0.25 16 22 O -0.20 -5.02 10.73 0.36 0.00 -5.02 16 23 C 0.04 1.14 7.44 25.18 0.19 1.32 16 24 C -0.07 -1.88 9.82 71.23 0.70 -1.18 16 25 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.05 1.97 5.92 -2.39 -0.01 1.96 16 27 H 0.03 1.47 4.89 -2.38 -0.01 1.46 16 28 H 0.09 3.19 3.74 -78.44 -0.29 2.90 16 29 H 0.09 2.26 7.94 -2.38 -0.02 2.24 16 30 H 0.03 0.95 7.90 -2.39 -0.02 0.93 16 31 H 0.09 2.17 7.57 -2.39 -0.02 2.15 16 32 H 0.05 1.83 4.62 -2.39 -0.01 1.82 16 33 H 0.06 2.28 5.59 -2.39 -0.01 2.27 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.04 1.65 6.82 -2.39 -0.02 1.64 16 36 H 0.04 2.13 5.41 -2.38 -0.01 2.12 16 37 H -0.01 -0.57 7.57 -2.38 -0.02 -0.58 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 40 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.08 2.78 6.62 -2.38 -0.02 2.77 16 Total: -1.00 -75.54 334.18 6.56 -68.97 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.74 Total: 13.93 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.06 Total: 3.71 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -2.20 Total: -98.48 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.06 Total: -36.35 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.54 6.56 -68.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298110902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.380 kcal (2) G-P(sol) polarization free energy of solvation -75.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds