Wall clock time and date at job start Tue Mar 31 2020 07:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46729 * 2 1 4 4 C 1.52995 * 109.47230 * 119.99610 * 2 1 3 5 5 H 1.09002 * 110.33941 * 292.23214 * 4 2 1 6 6 O 1.44427 * 110.37068 * 54.48138 * 4 2 1 7 7 C 1.44428 * 105.27568 * 159.34350 * 6 4 2 8 8 C 1.54481 * 104.89799 * 319.42931 * 7 6 4 9 9 C 1.54483 * 110.37352 * 169.86035 * 4 2 1 10 10 H 1.08998 * 110.51006 * 98.41067 * 9 4 2 11 11 C 1.50700 * 110.50974 * 335.83872 * 9 4 2 12 12 O 1.21283 * 119.99886 * 298.26436 * 11 9 4 13 13 N 1.34775 * 120.00135 * 118.26207 * 11 9 4 14 14 C 1.46505 * 119.99889 * 5.03928 * 13 11 9 15 15 C 1.50704 * 109.46693 * 84.18768 * 14 13 11 16 16 H 1.07993 * 120.00213 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99652 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00067 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47468 * 90.00101 * 19 17 15 21 21 H 1.48507 * 109.47361 * 210.00235 * 19 17 15 22 22 H 1.48504 * 109.46861 * 330.00117 * 19 17 15 23 23 C 1.46498 * 120.00039 * 185.03905 * 13 11 9 24 24 C 1.53001 * 109.47150 * 94.57671 * 23 13 11 25 25 C 1.47201 * 109.47526 * 184.80766 * 24 23 13 26 26 N 6.41139 * 120.63505 * 280.22751 * 2 1 3 27 27 H 1.09001 * 109.46632 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47294 * 299.99597 * 1 2 3 29 29 H 1.09000 * 109.47440 * 60.00393 * 1 2 3 30 30 H 1.08993 * 109.47259 * 240.00206 * 2 1 3 31 31 H 1.09004 * 109.46929 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47352 * 299.99920 * 3 2 1 33 33 H 1.08996 * 109.47572 * 60.00197 * 3 2 1 34 34 H 1.08995 * 110.37355 * 78.32008 * 7 6 4 35 35 H 1.09004 * 110.37417 * 200.54904 * 7 6 4 36 36 H 1.09007 * 110.51282 * 142.67873 * 8 7 6 37 37 H 1.08998 * 110.51535 * 265.39115 * 8 7 6 38 38 H 1.08998 * 109.47096 * 204.18317 * 14 13 11 39 39 H 1.08998 * 109.47136 * 324.19037 * 14 13 11 40 40 H 0.96995 * 120.00279 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47033 * 214.57383 * 23 13 11 42 42 H 1.08998 * 109.47461 * 334.57656 * 23 13 11 43 43 H 1.09006 * 109.47031 * 304.80696 * 24 23 13 44 44 H 1.08997 * 109.47281 * 64.80355 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.8017 -0.1448 2.1432 6 8 1.4660 -2.0436 1.3359 7 6 2.3479 -2.7849 2.2069 8 6 3.7716 -2.3494 1.7947 9 6 3.5633 -0.9579 1.1494 10 1 4.1059 -0.1923 1.7040 11 6 4.0017 -0.9740 -0.2924 12 8 3.5645 -1.8143 -1.0498 13 7 4.8796 -0.0546 -0.7401 14 6 5.4920 0.8907 0.1967 15 6 6.6903 0.2485 0.8469 16 1 6.9677 -0.7627 0.5885 17 6 7.4325 0.9521 1.7717 18 7 7.0944 2.1833 2.0868 19 14 8.9183 0.1564 2.5771 20 1 10.1296 0.4328 1.7638 21 1 9.1000 0.7145 3.9413 22 1 8.7063 -1.3107 2.6667 23 6 5.2216 -0.0006 -2.1636 24 6 4.3315 1.0285 -2.8633 25 6 4.5942 1.0009 -4.3114 26 7 4.7970 0.9795 -5.4289 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 2.1584 -2.5257 3.2485 35 1 2.2197 -3.8565 2.0540 36 1 4.4164 -2.2735 2.6703 37 1 4.1901 -3.0483 1.0705 38 1 5.8065 1.7843 -0.3424 39 1 4.7664 1.1648 0.9626 40 1 7.6167 2.6784 2.7371 41 1 6.2669 0.2873 -2.2755 42 1 5.0648 -0.9814 -2.6125 43 1 3.2843 0.7880 -2.6794 44 1 4.5498 2.0227 -2.4732 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331223887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:11 Heat of formation + Delta-G solvation = -65.072989 kcal Electronic energy + Delta-G solvation = -25506.166256 eV Core-core repulsion = 22037.451129 eV Total energy + Delta-G solvation = -3468.715127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48116 -38.18996 -36.62359 -35.24549 -34.81598 -33.03646 -32.05625 -30.85324 -28.23008 -27.30085 -26.83155 -24.61775 -23.25908 -22.74038 -21.23989 -20.23882 -18.12706 -17.50232 -16.77712 -16.60763 -16.16535 -15.56661 -15.36952 -14.91751 -14.67279 -14.58231 -14.13521 -13.57232 -13.23394 -13.13570 -13.07170 -12.67179 -12.50492 -12.43290 -12.17689 -11.99470 -11.97462 -11.63606 -11.56000 -11.36286 -11.20266 -11.08563 -10.86514 -10.80456 -10.67946 -10.58022 -10.40026 -10.27381 -10.10771 -9.79859 -9.49604 -9.00986 -8.64232 -7.92784 -6.29884 -4.37388 2.81786 2.92477 3.15853 3.20472 3.24303 3.28867 3.63357 4.13712 4.23971 4.34680 4.79071 4.99502 5.04798 5.11838 5.24952 5.27517 5.28737 5.35075 5.43832 5.48991 5.60576 5.64281 5.80158 5.83366 5.92610 5.97846 5.99139 6.06500 6.08400 6.17832 6.23425 6.29097 6.34732 6.38299 6.53793 6.57826 6.64492 7.02416 7.14037 7.36242 7.65836 7.68623 7.93078 8.13500 8.68015 8.88522 9.31566 10.76640 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.007392 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.728937 B = 3786.806261 C = 5519.610931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.159 4.159 4 C 0.100 3.900 5 H 0.073 0.927 6 O -0.364 6.364 7 C 0.048 3.952 8 C -0.133 4.133 9 C -0.143 4.143 10 H 0.123 0.877 11 C 0.538 3.462 12 O -0.560 6.560 13 N -0.597 5.597 14 C 0.234 3.766 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.122 3.878 24 C -0.047 4.047 25 C 0.221 3.779 26 N -0.449 5.449 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.266 0.734 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 -1.831 1.140 8.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.217 4.217 4 C 0.042 3.958 5 H 0.091 0.909 6 O -0.283 6.283 7 C -0.029 4.029 8 C -0.172 4.172 9 C -0.164 4.164 10 H 0.141 0.859 11 C 0.327 3.673 12 O -0.440 6.440 13 N -0.327 5.327 14 C 0.115 3.885 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.003 4.003 24 C -0.088 4.088 25 C -0.097 4.097 26 N -0.127 5.127 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.699 -2.194 -0.904 9.017 hybrid contribution 1.210 -0.122 1.223 1.725 sum -7.489 -2.316 0.319 7.845 Atomic orbital electron populations 1.21694 0.94910 1.01993 1.00868 1.21416 0.96530 0.96167 0.98352 1.22042 1.03004 0.94857 1.01767 1.22884 0.89725 0.85114 0.98094 0.90947 1.89107 1.48111 1.22933 1.68138 1.23349 0.88817 0.97116 0.93623 1.22856 0.97661 0.95356 1.01287 1.22886 0.97497 1.00667 0.95349 0.85914 1.20057 0.77805 0.80116 0.89291 1.90621 1.57375 1.37925 1.58095 1.48233 1.42500 1.34681 1.07324 1.19553 0.93211 0.87905 0.87878 1.21493 1.11879 1.00768 1.23834 0.92007 1.24909 0.97611 0.94752 0.96318 1.69897 1.39780 1.09789 1.33227 0.86549 0.82852 0.79699 0.78741 1.20500 1.21039 1.19746 1.21119 0.98374 0.98733 0.82089 1.19826 1.03472 1.03868 0.81649 1.29102 0.92873 0.92727 0.95020 1.81178 1.09249 1.09240 1.13013 0.92114 0.93213 0.93155 0.88873 0.90751 0.92437 0.92608 0.92621 0.89478 0.89886 0.90267 0.94152 0.93878 0.92407 0.89502 0.89743 0.87460 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.00 37.16 0.33 -1.41 16 2 C -0.11 -1.52 2.25 -90.62 -0.20 -1.73 16 3 C -0.16 -2.07 8.95 37.16 0.33 -1.74 16 4 C 0.10 1.52 2.68 -25.96 -0.07 1.45 16 5 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 6 O -0.36 -5.84 10.50 -35.23 -0.37 -6.21 16 7 C 0.05 0.66 7.62 37.93 0.29 0.95 16 8 C -0.13 -2.07 6.64 -25.01 -0.17 -2.23 16 9 C -0.14 -2.39 2.57 -90.05 -0.23 -2.62 16 10 H 0.12 2.20 5.45 -51.93 -0.28 1.92 16 11 C 0.54 9.78 4.08 -10.99 -0.04 9.73 16 12 O -0.56 -11.36 14.70 5.56 0.08 -11.28 16 13 N -0.60 -10.47 1.92 -175.06 -0.34 -10.81 16 14 C 0.23 4.68 3.87 -5.19 -0.02 4.66 16 15 C -0.54 -12.62 9.18 -34.44 -0.32 -12.93 16 16 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 17 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -22.40 13.29 55.43 0.74 -21.66 16 19 Si 0.89 19.27 29.54 -169.99 -5.02 14.25 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 C 0.12 1.88 5.42 -4.04 -0.02 1.85 16 24 C -0.05 -0.58 6.03 -29.52 -0.18 -0.76 16 25 C 0.22 3.11 15.43 -20.76 -0.32 2.79 16 26 N -0.45 -7.40 18.54 42.15 0.78 -6.62 16 27 H 0.06 0.83 7.59 -51.93 -0.39 0.43 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.55 5.51 -51.93 -0.29 1.26 16 31 H 0.07 1.07 3.99 -51.93 -0.21 0.86 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.33 7.51 -51.93 -0.39 0.94 16 38 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 39 H 0.04 0.89 4.98 -51.93 -0.26 0.63 16 40 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 41 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 42 H 0.08 1.36 7.23 -51.93 -0.38 0.99 16 43 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -27.72 354.94 -6.30 -34.01 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.81 Total: 3.41 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.71 Total: -0.45 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 1.18 Total: -39.09 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.29 Total: -17.49 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.72 -6.30 -34.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331223887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.059 kcal (2) G-P(sol) polarization free energy of solvation -27.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds