Wall clock time and date at job start Tue Mar 31 2020 07:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46729 * 2 1 4 4 C 1.52995 * 109.47230 * 119.99610 * 2 1 3 5 5 H 1.09002 * 110.33941 * 292.23214 * 4 2 1 6 6 O 1.44427 * 110.37068 * 54.48138 * 4 2 1 7 7 C 1.44428 * 105.27568 * 159.34350 * 6 4 2 8 8 C 1.54481 * 104.89799 * 319.42931 * 7 6 4 9 9 C 1.54483 * 110.37352 * 169.86035 * 4 2 1 10 10 H 1.08998 * 110.51006 * 98.41067 * 9 4 2 11 11 C 1.50700 * 110.50974 * 335.83872 * 9 4 2 12 12 O 1.21283 * 119.99886 * 298.26436 * 11 9 4 13 13 N 1.34775 * 120.00135 * 118.26207 * 11 9 4 14 14 C 1.46505 * 119.99889 * 5.03928 * 13 11 9 15 15 C 1.50704 * 109.46693 * 84.18768 * 14 13 11 16 16 H 1.07993 * 120.00213 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99652 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00067 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47468 * 90.00101 * 19 17 15 21 21 H 1.48507 * 109.47361 * 210.00235 * 19 17 15 22 22 H 1.48504 * 109.46861 * 330.00117 * 19 17 15 23 23 C 1.46498 * 120.00039 * 185.03905 * 13 11 9 24 24 C 1.53001 * 109.47150 * 94.57671 * 23 13 11 25 25 C 1.47201 * 109.47526 * 184.80766 * 24 23 13 26 26 N 6.41139 * 120.63505 * 280.22751 * 2 1 3 27 27 H 1.09001 * 109.46632 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47294 * 299.99597 * 1 2 3 29 29 H 1.09000 * 109.47440 * 60.00393 * 1 2 3 30 30 H 1.08993 * 109.47259 * 240.00206 * 2 1 3 31 31 H 1.09004 * 109.46929 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47352 * 299.99920 * 3 2 1 33 33 H 1.08996 * 109.47572 * 60.00197 * 3 2 1 34 34 H 1.08995 * 110.37355 * 78.32008 * 7 6 4 35 35 H 1.09004 * 110.37417 * 200.54904 * 7 6 4 36 36 H 1.09007 * 110.51282 * 142.67873 * 8 7 6 37 37 H 1.08998 * 110.51535 * 265.39115 * 8 7 6 38 38 H 1.08998 * 109.47096 * 204.18317 * 14 13 11 39 39 H 1.08998 * 109.47136 * 324.19037 * 14 13 11 40 40 H 0.96995 * 120.00279 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47033 * 214.57383 * 23 13 11 42 42 H 1.08998 * 109.47461 * 334.57656 * 23 13 11 43 43 H 1.09006 * 109.47031 * 304.80696 * 24 23 13 44 44 H 1.08997 * 109.47281 * 64.80355 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.8017 -0.1448 2.1432 6 8 1.4660 -2.0436 1.3359 7 6 2.3479 -2.7849 2.2069 8 6 3.7716 -2.3494 1.7947 9 6 3.5633 -0.9579 1.1494 10 1 4.1059 -0.1923 1.7040 11 6 4.0017 -0.9740 -0.2924 12 8 3.5645 -1.8143 -1.0498 13 7 4.8796 -0.0546 -0.7401 14 6 5.4920 0.8907 0.1967 15 6 6.6903 0.2485 0.8469 16 1 6.9677 -0.7627 0.5885 17 6 7.4325 0.9521 1.7717 18 7 7.0944 2.1833 2.0868 19 14 8.9183 0.1564 2.5771 20 1 10.1296 0.4328 1.7638 21 1 9.1000 0.7145 3.9413 22 1 8.7063 -1.3107 2.6667 23 6 5.2216 -0.0006 -2.1636 24 6 4.3315 1.0285 -2.8633 25 6 4.5942 1.0009 -4.3114 26 7 4.7970 0.9795 -5.4289 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 2.1584 -2.5257 3.2485 35 1 2.2197 -3.8565 2.0540 36 1 4.4164 -2.2735 2.6703 37 1 4.1901 -3.0483 1.0705 38 1 5.8065 1.7843 -0.3424 39 1 4.7664 1.1648 0.9626 40 1 7.6167 2.6784 2.7371 41 1 6.2669 0.2873 -2.2755 42 1 5.0648 -0.9814 -2.6125 43 1 3.2843 0.7880 -2.6794 44 1 4.5498 2.0227 -2.4732 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331223887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:10 Heat of formation + Delta-G solvation = -79.343748 kcal Electronic energy + Delta-G solvation = -25506.785082 eV Core-core repulsion = 22037.451129 eV Total energy + Delta-G solvation = -3469.333953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.80431 -39.48584 -37.87531 -36.74043 -35.91022 -34.71192 -33.42470 -32.14505 -29.39996 -28.95519 -27.85759 -25.87986 -24.94352 -23.93046 -22.47905 -21.40794 -19.54362 -18.79599 -18.29697 -18.11805 -17.43922 -16.92074 -16.53893 -16.30917 -16.15119 -15.84008 -15.47396 -14.75654 -14.49936 -14.38135 -14.30128 -14.19392 -13.73942 -13.65333 -13.58079 -13.40578 -13.00365 -12.95547 -12.83205 -12.77094 -12.65179 -12.50248 -12.32304 -12.10327 -11.99578 -11.80916 -11.78667 -11.54451 -11.40070 -11.33786 -10.72223 -10.56482 -10.32369 -9.44889 -8.14708 -6.26215 1.43401 1.48725 1.54694 1.60050 1.77125 1.82763 2.27631 2.47260 3.00051 3.15935 3.17866 3.57610 3.76621 3.86839 4.10062 4.13421 4.16775 4.19844 4.31665 4.39997 4.46427 4.53541 4.60201 4.73634 4.84561 4.88533 4.88824 4.92525 4.97725 5.01428 5.03653 5.08883 5.13200 5.17131 5.30001 5.38619 5.52741 5.57126 5.71739 5.90464 6.00025 6.16173 6.53607 6.59386 6.88945 7.38414 7.49080 8.89993 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.007392 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.728937 B = 3786.806261 C = 5519.610931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C -0.155 4.155 4 C 0.101 3.899 5 H 0.088 0.912 6 O -0.381 6.381 7 C 0.049 3.951 8 C -0.136 4.136 9 C -0.145 4.145 10 H 0.110 0.890 11 C 0.540 3.460 12 O -0.584 6.584 13 N -0.594 5.594 14 C 0.249 3.751 15 C -0.545 4.545 16 H 0.048 0.952 17 C 0.031 3.969 18 N -0.912 5.912 19 Si 0.941 3.059 20 H -0.281 1.281 21 H -0.282 1.282 22 H -0.274 1.274 23 C 0.119 3.881 24 C -0.032 4.032 25 C 0.244 3.756 26 N -0.488 5.488 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.043 0.957 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 -1.378 1.877 9.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 C -0.212 4.212 4 C 0.043 3.957 5 H 0.106 0.894 6 O -0.300 6.300 7 C -0.027 4.027 8 C -0.174 4.174 9 C -0.167 4.167 10 H 0.128 0.872 11 C 0.330 3.670 12 O -0.465 6.465 13 N -0.324 5.324 14 C 0.129 3.871 15 C -0.584 4.584 16 H 0.066 0.934 17 C -0.170 4.170 18 N -0.551 5.551 19 Si 0.768 3.232 20 H -0.207 1.207 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.006 4.006 24 C -0.073 4.073 25 C -0.073 4.073 26 N -0.167 5.167 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.493 -1.744 -0.175 9.654 hybrid contribution 1.476 -0.313 0.995 1.808 sum -8.017 -2.057 0.821 8.318 Atomic orbital electron populations 1.21640 0.93533 1.01530 1.02185 1.21392 0.97670 0.96550 0.96822 1.22007 1.01871 0.94176 1.03194 1.22984 0.88354 0.85175 0.99190 0.89422 1.89091 1.48628 1.23460 1.68847 1.23493 0.87030 0.97704 0.94518 1.22885 0.99198 0.94321 1.01013 1.22901 0.98755 1.00899 0.94111 0.87191 1.20276 0.77397 0.79573 0.89740 1.90608 1.58287 1.38787 1.58855 1.48135 1.42173 1.34184 1.07877 1.19246 0.92132 0.87704 0.87988 1.21702 1.12787 1.00160 1.23744 0.93410 1.25418 0.99465 0.95157 0.96939 1.69953 1.40676 1.10553 1.33901 0.85818 0.80532 0.78863 0.78021 1.20704 1.20801 1.19856 1.21184 0.99089 0.99193 0.81135 1.19758 1.03335 1.03997 0.80224 1.29226 0.91650 0.91456 0.94974 1.81206 1.10572 1.10616 1.14257 0.93449 0.91912 0.91817 0.91330 0.92382 0.90668 0.91579 0.90162 0.88231 0.89040 0.92195 0.94462 0.93912 0.92421 0.89544 0.90765 0.86351 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.00 71.98 0.65 -2.42 16 2 C -0.11 -2.87 2.25 -10.79 -0.02 -2.90 16 3 C -0.16 -3.69 8.95 71.98 0.64 -3.05 16 4 C 0.10 2.92 2.68 31.10 0.08 3.00 16 5 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 6 O -0.38 -11.71 10.50 -148.98 -1.56 -13.27 16 7 C 0.05 1.26 7.62 72.49 0.55 1.82 16 8 C -0.14 -4.14 6.64 31.71 0.21 -3.93 16 9 C -0.15 -4.78 2.57 -10.42 -0.03 -4.81 16 10 H 0.11 3.89 5.45 -2.39 -0.01 3.88 16 11 C 0.54 19.51 4.08 87.66 0.36 19.87 16 12 O -0.58 -23.78 14.70 -3.04 -0.04 -23.82 16 13 N -0.59 -20.58 1.92 -826.14 -1.59 -22.17 16 14 C 0.25 9.85 3.87 85.63 0.33 10.18 16 15 C -0.55 -25.25 9.18 25.60 0.23 -25.01 16 16 H 0.05 2.32 7.81 -2.91 -0.02 2.29 16 17 C 0.03 1.50 5.46 84.66 0.46 1.96 16 18 N -0.91 -45.33 13.29 21.45 0.28 -45.04 16 19 Si 0.94 39.08 29.54 68.60 2.03 41.10 16 20 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 C 0.12 3.58 5.42 86.38 0.47 4.05 16 24 C -0.03 -0.75 6.03 28.79 0.17 -0.58 16 25 C 0.24 6.61 15.43 89.44 1.38 7.99 16 26 N -0.49 -15.76 18.54 20.01 0.37 -15.39 16 27 H 0.05 1.22 7.59 -2.39 -0.02 1.20 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 2.22 5.51 -2.39 -0.01 2.21 16 31 H 0.06 1.57 3.99 -2.38 -0.01 1.56 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.06 2.03 7.51 -2.39 -0.02 2.01 16 38 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 39 H 0.04 1.73 4.98 -2.39 -0.01 1.72 16 40 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 41 H 0.09 2.60 8.11 -2.39 -0.02 2.58 16 42 H 0.07 2.40 7.23 -2.39 -0.02 2.38 16 43 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 44 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -58.15 354.94 5.97 -52.18 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.99 Total: 20.24 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.50 Total: 6.18 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -0.93 Total: -82.60 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.61 Total: -37.09 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.10 kcal Total: -58.15 5.97 -52.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331223887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.167 kcal (2) G-P(sol) polarization free energy of solvation -58.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds