Wall clock time and date at job start Tue Mar 31 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34815 * 126.88796 * 2 1 4 4 O 1.21546 * 123.80122 * 359.96509 * 3 2 1 5 5 N 1.33931 * 112.39944 * 179.81233 * 3 2 1 6 6 C 1.46493 * 124.21154 * 180.20285 * 5 3 2 7 7 C 1.53000 * 109.47240 * 270.30260 * 6 5 3 8 8 C 1.53006 * 109.47176 * 300.00385 * 7 6 5 9 9 C 1.53000 * 109.47270 * 59.99871 * 7 6 5 10 10 C 1.50701 * 109.47486 * 180.02562 * 7 6 5 11 11 H 1.08000 * 119.99487 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00045 * 180.02562 * 10 7 6 13 13 N 1.31519 * 120.00335 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00014 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47322 * 59.99227 * 14 12 10 16 16 H 1.48497 * 109.47631 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.46783 * 299.99491 * 14 12 10 18 18 C 1.35053 * 111.57660 * 0.47274 * 5 3 2 19 19 O 1.21239 * 127.34808 * 179.73696 * 18 5 3 20 20 C 1.46417 * 126.88318 * 180.31428 * 2 1 3 21 21 C 1.53451 * 111.19668 * 60.14017 * 20 2 1 22 22 C 1.55088 * 103.98194 * 214.71256 * 21 20 2 23 23 C 1.54957 * 102.85405 * 37.23582 * 22 21 20 24 24 C 1.53050 * 111.43743 * 300.26583 * 20 2 1 25 25 H 1.09001 * 109.47060 * 269.69069 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.68557 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.68640 * 1 2 3 28 28 H 1.08996 * 109.47316 * 30.29963 * 6 5 3 29 29 H 1.08998 * 109.47416 * 150.30634 * 6 5 3 30 30 H 1.09000 * 109.47242 * 59.99484 * 8 7 6 31 31 H 1.09000 * 109.47385 * 180.02562 * 8 7 6 32 32 H 1.09003 * 109.46592 * 299.99615 * 8 7 6 33 33 H 1.09000 * 109.46733 * 60.00098 * 9 7 6 34 34 H 1.08997 * 109.47599 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46986 * 300.00417 * 9 7 6 36 36 H 0.96994 * 120.00278 * 180.02562 * 13 12 10 37 37 H 1.09002 * 110.52952 * 333.34096 * 21 20 2 38 38 H 1.08999 * 110.52300 * 96.08943 * 21 20 2 39 39 H 1.08991 * 110.73489 * 278.89191 * 22 21 20 40 40 H 1.09000 * 110.88795 * 155.64688 * 22 21 20 41 41 H 1.09007 * 110.48031 * 203.83252 * 23 22 21 42 42 H 1.08999 * 110.48519 * 81.19843 * 23 22 21 43 43 H 1.09005 * 110.09503 * 241.03294 * 24 20 2 44 44 H 1.08998 * 110.09445 * 2.62511 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2743 1.0783 0.0000 4 8 1.8723 2.2253 -0.0006 5 7 3.5710 0.7432 0.0041 6 6 4.6715 1.7100 0.0093 7 6 5.0547 2.0545 -1.4313 8 6 5.4961 0.7833 -2.1595 9 6 3.8471 2.6603 -2.1493 10 6 6.1873 3.0487 -1.4259 11 1 6.5929 3.4000 -0.4887 12 6 6.7049 3.5104 -2.6175 13 7 6.2106 3.0829 -3.7588 14 14 8.1092 4.7422 -2.6108 15 1 9.2812 4.1529 -1.9148 16 1 8.4811 5.0766 -4.0091 17 1 7.6821 5.9760 -1.9032 18 6 3.7377 -0.5970 -0.0032 19 8 4.7849 -1.2079 -0.0064 20 6 2.3438 -1.1711 -0.0064 21 6 2.1071 -2.0356 -1.2519 22 6 2.3252 -3.4861 -0.7483 23 6 1.7195 -3.4507 0.6776 24 6 2.1052 -2.0562 1.2192 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 0.8928 -0.5090 27 1 -0.3634 -0.8872 -0.5187 28 1 4.3571 2.6157 0.5280 29 1 5.5319 1.2785 0.5208 30 1 4.6772 0.0639 -2.1634 31 1 5.7695 1.0287 -3.1857 32 1 6.3564 0.3517 -1.6480 33 1 3.5327 3.5659 -1.6306 34 1 4.1199 2.9053 -3.1758 35 1 3.0282 1.9409 -2.1532 36 1 6.5750 3.4075 -4.5971 37 1 1.0885 -1.9073 -1.6184 38 1 2.8284 -1.7890 -2.0310 39 1 3.3877 -3.7258 -0.7104 40 1 1.7921 -4.1999 -1.3764 41 1 2.1558 -4.2344 1.2969 42 1 0.6355 -3.5565 0.6343 43 1 3.0156 -2.1245 1.8148 44 1 1.2925 -1.6505 1.8216 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334971337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:28 Heat of formation + Delta-G solvation = -43.687534 kcal Electronic energy + Delta-G solvation = -26020.680261 eV Core-core repulsion = 22552.892477 eV Total energy + Delta-G solvation = -3467.787784 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.36334 -38.44406 -37.84477 -35.91276 -35.12585 -33.73044 -31.20956 -29.10695 -28.99012 -27.02495 -25.65592 -25.46408 -24.85293 -22.91155 -21.12768 -20.44350 -20.12110 -18.66979 -16.78819 -16.57730 -16.29709 -15.91298 -15.69694 -14.86133 -14.73591 -14.56700 -14.41809 -14.34516 -13.39234 -13.17021 -12.85200 -12.76536 -12.57754 -12.17957 -12.03367 -11.98867 -11.77119 -11.37436 -11.29580 -11.18017 -11.10691 -10.76754 -10.73605 -10.64049 -10.35223 -10.24318 -10.15136 -9.99275 -9.59850 -9.41141 -8.86137 -8.73424 -8.56032 -8.29524 -5.93713 -4.05092 2.02127 2.49277 3.27922 3.34425 3.38561 3.41876 3.51247 4.16179 4.31253 4.35146 4.45127 4.90504 4.97172 5.12766 5.17305 5.21545 5.32156 5.34739 5.45825 5.53842 5.66350 5.68150 5.73842 5.80117 5.89801 5.98934 6.13857 6.17448 6.30120 6.33301 6.49116 6.68114 6.89145 7.02201 7.13545 7.18558 7.51515 7.61162 7.71355 7.76430 7.83420 8.14100 8.20468 8.45239 8.55831 8.94193 9.59706 11.07343 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.005014 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.600612 B = 5583.327925 C = 6016.324099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.628 5.628 3 C 0.700 3.300 4 O -0.535 6.535 5 N -0.564 5.564 6 C 0.127 3.873 7 C 0.055 3.945 8 C -0.122 4.122 9 C -0.119 4.119 10 C -0.507 4.507 11 H 0.056 0.944 12 C 0.068 3.932 13 N -0.884 5.884 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.534 3.466 19 O -0.463 6.463 20 C 0.114 3.886 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.079 0.921 30 H -0.002 1.002 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.000 1.000 36 H 0.260 0.740 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 -12.920 7.154 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.368 5.368 3 C 0.403 3.597 4 O -0.408 6.408 5 N -0.308 5.308 6 C 0.008 3.992 7 C 0.054 3.946 8 C -0.180 4.180 9 C -0.177 4.177 10 C -0.545 4.545 11 H 0.075 0.925 12 C -0.134 4.134 13 N -0.522 5.522 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.320 3.680 19 O -0.333 6.333 20 C 0.025 3.975 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.155 4.155 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.017 0.983 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.704 -12.494 6.964 18.482 hybrid contribution 0.741 0.774 -0.093 1.075 sum -10.963 -11.721 6.871 17.458 Atomic orbital electron populations 1.21352 0.75195 1.03346 1.01771 1.47502 1.05984 1.05011 1.78288 1.16004 0.81115 0.85116 0.77460 1.90954 1.77182 1.18396 1.54265 1.46703 1.08211 1.09181 1.66664 1.22231 0.84943 0.89561 1.02478 1.18468 0.94399 0.94024 0.87749 1.21772 0.96939 0.95291 1.03961 1.21732 0.94822 0.97582 1.03580 1.20885 1.16504 1.24497 0.92634 0.92544 1.24871 0.96744 0.96290 0.95491 1.69824 1.41593 1.43613 0.97200 0.86630 0.82569 0.81687 0.76917 1.20297 1.21341 1.20275 1.20327 0.90355 0.82531 0.74808 1.90760 1.30951 1.65649 1.45950 1.21572 0.88648 0.88357 0.98968 1.22463 1.03228 0.94252 0.95460 1.22547 1.02161 0.95452 0.95878 1.22377 1.00694 0.95976 0.96567 1.22256 1.03052 0.94760 0.95457 0.92570 0.90101 0.90777 0.90036 0.90216 0.98304 0.89908 0.95196 0.95073 0.90171 0.98083 0.93000 0.89769 0.90163 0.90328 0.90775 0.90910 0.91259 0.90220 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.25 10.53 59.85 0.63 1.88 16 2 N -0.63 -8.99 2.84 -173.57 -0.49 -9.48 16 3 C 0.70 13.31 6.75 -87.64 -0.59 12.72 16 4 O -0.53 -11.73 15.98 5.33 0.09 -11.64 16 5 N -0.56 -11.17 2.14 -120.87 -0.26 -11.43 16 6 C 0.13 2.82 4.68 -4.05 -0.02 2.80 16 7 C 0.05 1.38 0.57 -155.66 -0.09 1.29 16 8 C -0.12 -3.08 7.28 37.16 0.27 -2.81 16 9 C -0.12 -3.08 7.11 37.16 0.26 -2.82 16 10 C -0.51 -13.81 8.01 -34.44 -0.28 -14.08 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 13 N -0.88 -24.82 9.35 55.43 0.52 -24.31 16 14 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.53 9.60 4.94 -10.84 -0.05 9.54 16 19 O -0.46 -9.24 16.92 5.59 0.09 -9.15 16 20 C 0.11 1.55 1.00 -132.73 -0.13 1.42 16 21 C -0.12 -1.36 6.10 -25.39 -0.15 -1.52 16 22 C -0.12 -1.15 6.92 -24.59 -0.17 -1.32 16 23 C -0.12 -0.96 6.85 -24.92 -0.17 -1.13 16 24 C -0.12 -1.22 6.18 -25.92 -0.16 -1.38 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 27 H 0.07 0.54 7.11 -51.93 -0.37 0.17 16 28 H 0.08 1.82 7.87 -51.93 -0.41 1.41 16 29 H 0.08 1.73 8.02 -51.93 -0.42 1.31 16 30 H 0.00 -0.05 6.19 -51.93 -0.32 -0.37 16 31 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 35 H 0.00 0.00 6.15 -51.93 -0.32 -0.32 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.08 0.84 6.89 -51.93 -0.36 0.48 16 38 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.91 7.72 -51.93 -0.40 0.51 16 44 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -31.49 338.79 -7.66 -39.15 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.95 Total: -0.90 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.74 Total: 6.35 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.23 Total: -45.22 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.18 Total: -20.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.49 -7.66 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334971337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.536 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds