Wall clock time and date at job start Tue Mar 31 2020 07:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34815 * 126.88796 * 2 1 4 4 O 1.21546 * 123.80122 * 359.96509 * 3 2 1 5 5 N 1.33931 * 112.39944 * 179.81233 * 3 2 1 6 6 C 1.46493 * 124.21154 * 180.20285 * 5 3 2 7 7 C 1.53000 * 109.47240 * 270.30260 * 6 5 3 8 8 C 1.53006 * 109.47176 * 300.00385 * 7 6 5 9 9 C 1.53000 * 109.47270 * 59.99871 * 7 6 5 10 10 C 1.50701 * 109.47486 * 180.02562 * 7 6 5 11 11 H 1.08000 * 119.99487 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00045 * 180.02562 * 10 7 6 13 13 N 1.31519 * 120.00335 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00014 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47322 * 59.99227 * 14 12 10 16 16 H 1.48497 * 109.47631 * 179.97438 * 14 12 10 17 17 H 1.48510 * 109.46783 * 299.99491 * 14 12 10 18 18 C 1.35053 * 111.57660 * 0.47274 * 5 3 2 19 19 O 1.21239 * 127.34808 * 179.73696 * 18 5 3 20 20 C 1.46417 * 126.88318 * 180.31428 * 2 1 3 21 21 C 1.53451 * 111.19668 * 60.14017 * 20 2 1 22 22 C 1.55088 * 103.98194 * 214.71256 * 21 20 2 23 23 C 1.54957 * 102.85405 * 37.23582 * 22 21 20 24 24 C 1.53050 * 111.43743 * 300.26583 * 20 2 1 25 25 H 1.09001 * 109.47060 * 269.69069 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.68557 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.68640 * 1 2 3 28 28 H 1.08996 * 109.47316 * 30.29963 * 6 5 3 29 29 H 1.08998 * 109.47416 * 150.30634 * 6 5 3 30 30 H 1.09000 * 109.47242 * 59.99484 * 8 7 6 31 31 H 1.09000 * 109.47385 * 180.02562 * 8 7 6 32 32 H 1.09003 * 109.46592 * 299.99615 * 8 7 6 33 33 H 1.09000 * 109.46733 * 60.00098 * 9 7 6 34 34 H 1.08997 * 109.47599 * 180.02562 * 9 7 6 35 35 H 1.09000 * 109.46986 * 300.00417 * 9 7 6 36 36 H 0.96994 * 120.00278 * 180.02562 * 13 12 10 37 37 H 1.09002 * 110.52952 * 333.34096 * 21 20 2 38 38 H 1.08999 * 110.52300 * 96.08943 * 21 20 2 39 39 H 1.08991 * 110.73489 * 278.89191 * 22 21 20 40 40 H 1.09000 * 110.88795 * 155.64688 * 22 21 20 41 41 H 1.09007 * 110.48031 * 203.83252 * 23 22 21 42 42 H 1.08999 * 110.48519 * 81.19843 * 23 22 21 43 43 H 1.09005 * 110.09503 * 241.03294 * 24 20 2 44 44 H 1.08998 * 110.09445 * 2.62511 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2743 1.0783 0.0000 4 8 1.8723 2.2253 -0.0006 5 7 3.5710 0.7432 0.0041 6 6 4.6715 1.7100 0.0093 7 6 5.0547 2.0545 -1.4313 8 6 5.4961 0.7833 -2.1595 9 6 3.8471 2.6603 -2.1493 10 6 6.1873 3.0487 -1.4259 11 1 6.5929 3.4000 -0.4887 12 6 6.7049 3.5104 -2.6175 13 7 6.2106 3.0829 -3.7588 14 14 8.1092 4.7422 -2.6108 15 1 9.2812 4.1529 -1.9148 16 1 8.4811 5.0766 -4.0091 17 1 7.6821 5.9760 -1.9032 18 6 3.7377 -0.5970 -0.0032 19 8 4.7849 -1.2079 -0.0064 20 6 2.3438 -1.1711 -0.0064 21 6 2.1071 -2.0356 -1.2519 22 6 2.3252 -3.4861 -0.7483 23 6 1.7195 -3.4507 0.6776 24 6 2.1052 -2.0562 1.2192 25 1 -0.3633 -0.0055 1.0277 26 1 -0.3633 0.8928 -0.5090 27 1 -0.3634 -0.8872 -0.5187 28 1 4.3571 2.6157 0.5280 29 1 5.5319 1.2785 0.5208 30 1 4.6772 0.0639 -2.1634 31 1 5.7695 1.0287 -3.1857 32 1 6.3564 0.3517 -1.6480 33 1 3.5327 3.5659 -1.6306 34 1 4.1199 2.9053 -3.1758 35 1 3.0282 1.9409 -2.1532 36 1 6.5750 3.4075 -4.5971 37 1 1.0885 -1.9073 -1.6184 38 1 2.8284 -1.7890 -2.0310 39 1 3.3877 -3.7258 -0.7104 40 1 1.7921 -4.1999 -1.3764 41 1 2.1558 -4.2344 1.2969 42 1 0.6355 -3.5565 0.6343 43 1 3.0156 -2.1245 1.8148 44 1 1.2925 -1.6505 1.8216 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334971337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:28 Heat of formation + Delta-G solvation = -62.227112 kcal Electronic energy + Delta-G solvation = -26021.484197 eV Core-core repulsion = 22552.892477 eV Total energy + Delta-G solvation = -3468.591720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.72105 -39.82280 -39.19006 -37.66494 -36.52060 -35.14485 -33.16248 -30.17924 -29.90592 -28.27792 -27.73606 -27.37765 -26.54554 -24.25625 -22.16325 -21.64473 -21.27980 -20.47022 -18.36486 -18.09028 -17.63954 -17.48878 -17.05750 -16.54697 -16.10322 -15.97519 -15.69017 -15.44415 -14.97789 -14.59657 -14.29767 -14.25400 -14.00613 -13.60439 -13.28656 -13.12131 -13.03106 -12.94509 -12.72619 -12.65049 -12.61178 -12.30436 -12.21760 -12.08259 -12.04429 -11.99201 -11.66698 -11.49868 -11.42880 -11.04933 -10.79167 -10.47613 -10.41901 -9.88413 -8.04349 -6.22856 0.61259 1.18255 1.43571 1.44442 1.51708 1.99927 2.07021 2.44209 2.94093 3.18576 3.38272 3.45913 3.93137 4.14792 4.24246 4.26224 4.36123 4.38004 4.40526 4.50260 4.55202 4.61567 4.71733 4.73202 4.85978 4.86563 4.92583 4.95672 4.99475 5.03701 5.07505 5.15693 5.21166 5.28374 5.39122 5.46343 5.50138 5.53936 5.60324 5.98181 6.07484 6.21541 6.33253 6.43067 6.81089 7.10335 7.44772 8.95307 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.005014 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.600612 B = 5583.327925 C = 6016.324099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.612 5.612 3 C 0.690 3.310 4 O -0.574 6.574 5 N -0.576 5.576 6 C 0.137 3.863 7 C 0.048 3.952 8 C -0.102 4.102 9 C -0.098 4.098 10 C -0.529 4.529 11 H 0.056 0.944 12 C 0.023 3.977 13 N -0.905 5.905 14 Si 0.955 3.045 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.522 3.478 19 O -0.491 6.491 20 C 0.119 3.881 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.107 4.107 24 C -0.113 4.113 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.006 0.994 31 H 0.059 0.941 32 H 0.019 0.981 33 H 0.016 0.984 34 H 0.057 0.943 35 H 0.006 0.994 36 H 0.260 0.740 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.829 -14.754 7.958 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.351 5.351 3 C 0.393 3.607 4 O -0.450 6.450 5 N -0.320 5.320 6 C 0.016 3.984 7 C 0.047 3.953 8 C -0.159 4.159 9 C -0.156 4.156 10 C -0.567 4.567 11 H 0.074 0.926 12 C -0.176 4.176 13 N -0.544 5.544 14 Si 0.781 3.219 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.199 1.199 18 C 0.311 3.689 19 O -0.363 6.363 20 C 0.030 3.970 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.145 4.145 24 C -0.152 4.152 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.556 -14.382 7.777 21.239 hybrid contribution 1.279 1.315 -0.351 1.868 sum -12.276 -13.066 7.426 19.406 Atomic orbital electron populations 1.21785 0.72204 1.04686 1.03853 1.47740 1.07306 1.03611 1.76457 1.16249 0.81167 0.85722 0.77588 1.90919 1.77649 1.20110 1.56335 1.46736 1.08307 1.09701 1.67211 1.21809 0.86067 0.90233 1.00271 1.18477 0.93737 0.93559 0.89503 1.21525 0.96710 0.95469 1.02233 1.21480 0.95182 0.97027 1.01864 1.21205 1.17369 1.25284 0.92847 0.92601 1.25603 0.98967 0.97906 0.95153 1.69952 1.42510 1.44366 0.97558 0.85660 0.79752 0.79490 0.76994 1.19723 1.20926 1.19872 1.21190 0.92202 0.81859 0.73684 1.90732 1.32569 1.65910 1.47046 1.21774 0.85149 0.88259 1.01805 1.22552 1.03841 0.95389 0.93651 1.22555 1.01576 0.94130 0.97411 1.22396 1.02510 0.94349 0.95205 1.22324 1.03285 0.95685 0.93898 0.90151 0.91214 0.86958 0.90682 0.90297 0.97467 0.92234 0.96153 0.96483 0.92453 0.97529 0.93020 0.87051 0.93231 0.92381 0.88078 0.89647 0.88241 0.91506 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.88 10.53 127.77 1.35 3.23 16 2 N -0.61 -16.34 2.84 -821.31 -2.33 -18.67 16 3 C 0.69 26.20 6.75 179.31 1.21 27.41 16 4 O -0.57 -25.56 15.98 -3.86 -0.06 -25.62 16 5 N -0.58 -23.21 2.14 -773.31 -1.66 -24.87 16 6 C 0.14 6.29 4.68 86.38 0.40 6.69 16 7 C 0.05 2.51 0.57 -52.93 -0.03 2.48 16 8 C -0.10 -5.29 7.28 71.98 0.52 -4.77 16 9 C -0.10 -5.21 7.11 71.98 0.51 -4.70 16 10 C -0.53 -29.50 8.01 25.60 0.21 -29.30 16 11 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 12 C 0.02 1.29 5.15 84.65 0.44 1.72 16 13 N -0.91 -51.93 9.35 21.45 0.20 -51.73 16 14 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 C 0.52 18.86 4.94 87.63 0.43 19.29 16 19 O -0.49 -19.99 16.92 -2.90 -0.05 -20.04 16 20 C 0.12 3.01 1.00 3.06 0.00 3.02 16 21 C -0.12 -2.45 6.10 31.46 0.19 -2.26 16 22 C -0.12 -1.85 6.92 31.98 0.22 -1.63 16 23 C -0.11 -1.24 6.85 31.77 0.22 -1.03 16 24 C -0.11 -2.02 6.18 31.12 0.19 -1.82 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.37 8.04 -2.38 -0.02 1.35 16 27 H 0.11 1.04 7.11 -2.39 -0.02 1.02 16 28 H 0.07 3.48 7.87 -2.39 -0.02 3.47 16 29 H 0.08 3.56 8.02 -2.39 -0.02 3.54 16 30 H 0.01 0.32 6.19 -2.39 -0.01 0.30 16 31 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 32 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.02 0.89 8.09 -2.39 -0.02 0.88 16 34 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 35 H 0.01 0.30 6.15 -2.39 -0.01 0.28 16 36 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.11 1.75 6.89 -2.39 -0.02 1.73 16 38 H 0.05 1.36 7.83 -2.39 -0.02 1.34 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 1.39 7.72 -2.38 -0.02 1.37 16 44 H 0.10 1.43 7.67 -2.39 -0.02 1.41 16 Total: -1.00 -71.24 338.79 4.98 -66.25 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.99 Total: 10.13 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 5.87 Total: 18.35 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -3.79 Total: -95.27 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.11 Total: -45.66 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.24 4.98 -66.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334971337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.027 kcal (2) G-P(sol) polarization free energy of solvation -71.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds