Wall clock time and date at job start Tue Mar 31 2020 07:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.46735 * 2 1 4 4 C 1.50698 * 109.47392 * 240.00186 * 2 1 3 5 5 H 1.07992 * 119.99960 * 240.00333 * 4 2 1 6 6 C 1.37879 * 120.00059 * 59.99660 * 4 2 1 7 7 N 1.31521 * 119.99934 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47076 * 60.00366 * 8 6 4 10 10 H 1.48502 * 109.47013 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46897 * 300.00002 * 8 6 4 12 12 C 1.52999 * 109.47003 * 119.99833 * 2 1 3 13 13 N 1.46495 * 109.47305 * 300.00554 * 12 2 1 14 14 C 1.33870 * 124.19075 * 269.99705 * 13 12 2 15 15 O 1.21535 * 123.79036 * 359.96997 * 14 13 12 16 16 N 1.34683 * 112.42039 * 180.02562 * 14 13 12 17 17 C 1.46840 * 106.42661 * 359.97438 * 16 14 13 18 18 C 1.52472 * 110.53246 * 118.52554 * 17 16 14 19 19 C 1.53090 * 109.56443 * 64.22610 * 18 17 16 20 20 C 1.52998 * 109.42342 * 59.15052 * 19 18 17 21 21 C 1.53005 * 109.51993 * 299.54463 * 20 19 18 22 22 C 1.52469 * 110.53009 * 241.49243 * 17 16 14 23 23 C 1.34908 * 124.20004 * 90.00176 * 13 12 2 24 24 O 1.21232 * 127.25280 * 0.25879 * 23 13 12 25 25 H 1.08992 * 109.47283 * 299.99796 * 1 2 3 26 26 H 1.09003 * 109.46909 * 60.00211 * 1 2 3 27 27 H 1.08998 * 109.46298 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46891 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47269 * 300.00333 * 3 2 1 30 30 H 1.09002 * 109.47210 * 60.00155 * 3 2 1 31 31 H 0.96996 * 119.99797 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47110 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46844 * 60.00377 * 12 2 1 34 34 H 0.96995 * 126.78849 * 179.97438 * 16 14 13 35 35 H 1.08997 * 109.45668 * 184.25297 * 18 17 16 36 36 H 1.09003 * 109.45462 * 304.19970 * 18 17 16 37 37 H 1.08999 * 109.47747 * 299.16451 * 19 18 17 38 38 H 1.08996 * 109.48264 * 179.14455 * 19 18 17 39 39 H 1.08993 * 109.46751 * 179.52513 * 20 19 18 40 40 H 1.09006 * 109.45799 * 59.55110 * 20 19 18 41 41 H 1.08998 * 109.47858 * 300.46948 * 21 20 19 42 42 H 1.09000 * 109.48917 * 180.44397 * 21 20 19 43 43 H 1.09000 * 109.45661 * 55.80332 * 22 17 16 44 44 H 1.09004 * 109.45603 * 175.76744 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3216 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8261 -0.4205 -5.2205 11 1 3.8065 -1.1207 -4.0081 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 2.2050 0.9632 3.0597 15 8 3.2771 1.3986 2.6881 16 7 1.5413 1.4257 4.1366 17 6 0.3065 0.6370 4.2337 18 6 0.2669 -0.1349 5.5479 19 6 0.2150 0.8495 6.7192 20 6 -1.0287 1.7309 6.5883 21 6 -0.9630 2.5163 5.2769 22 6 -0.9157 1.5387 4.0998 23 6 0.3879 -0.3176 3.0645 24 8 -0.4199 -1.1659 2.7521 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7088 1.1613 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6768 -1.7489 1.2492 34 1 1.8233 2.1388 4.7306 35 1 -0.6179 -0.7710 5.5689 36 1 1.1605 -0.7533 5.6328 37 1 1.1071 1.4756 6.7076 38 1 0.1714 0.2963 7.6574 39 1 -1.0709 2.4264 7.4265 40 1 -1.9203 1.1037 6.5917 41 1 -0.0673 3.1374 5.2697 42 1 -1.8454 3.1500 5.1878 43 1 -0.8542 2.0975 3.1660 44 1 -1.8188 0.9282 4.0989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335300979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:31 Heat of formation + Delta-G solvation = -61.127037 kcal Electronic energy + Delta-G solvation = -25875.207002 eV Core-core repulsion = 22406.662984 eV Total energy + Delta-G solvation = -3468.544017 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.41102 -38.52892 -38.01996 -35.97318 -35.21405 -33.18858 -31.15912 -30.89176 -29.80848 -26.34559 -25.62089 -25.09773 -23.78163 -23.03546 -22.16843 -20.48991 -19.88091 -18.42808 -17.48109 -16.60450 -16.35392 -15.77194 -15.28915 -15.11261 -14.86269 -14.62094 -14.38127 -14.31571 -13.75101 -13.18902 -13.09424 -12.68633 -12.62360 -12.47571 -12.41949 -12.10540 -11.47355 -11.22400 -11.11674 -11.10305 -10.82829 -10.73412 -10.64192 -10.61760 -10.37819 -10.23446 -10.16276 -10.01155 -9.56088 -9.41584 -9.23097 -8.74779 -8.61356 -8.29788 -5.94032 -4.05336 2.02010 2.70441 3.34312 3.38439 3.38964 3.42605 3.52214 4.13998 4.37819 4.43929 4.45003 4.76089 4.82349 4.93871 5.13832 5.19226 5.31660 5.32247 5.43044 5.58730 5.69452 5.74506 5.79248 5.84686 5.94043 6.02617 6.09891 6.16063 6.23285 6.32646 6.49215 6.88858 6.99468 7.03537 7.12637 7.18314 7.51167 7.58212 7.70782 7.76232 7.83225 8.13966 8.20576 8.45223 8.58249 8.93982 9.59492 11.07006 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.004545 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.966941 B = 6158.689216 C = 6288.186161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.055 3.945 3 C -0.120 4.120 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.127 3.873 13 N -0.562 5.562 14 C 0.702 3.298 15 O -0.537 6.537 16 N -0.726 5.726 17 C 0.124 3.876 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.114 4.114 23 C 0.529 3.471 24 O -0.465 6.465 25 H -0.001 1.001 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.001 0.999 31 H 0.260 0.740 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.432 0.568 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 2.279 18.682 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.054 3.946 3 C -0.178 4.178 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.007 3.993 13 N -0.306 5.306 14 C 0.403 3.597 15 O -0.410 6.410 16 N -0.392 5.392 17 C 0.033 3.967 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.153 4.153 23 C 0.315 3.685 24 O -0.335 6.335 25 H 0.018 0.982 26 H 0.101 0.899 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.275 0.725 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.016 2.076 18.030 18.588 hybrid contribution 0.452 -0.085 -0.667 0.810 sum -3.565 1.991 17.363 17.837 Atomic orbital electron populations 1.21776 0.97479 0.99193 0.99583 1.18467 0.92983 0.93144 0.90043 1.21737 0.98781 0.97781 0.99473 1.20885 1.31686 1.12093 0.89886 0.92539 1.24873 0.94834 0.94894 0.98792 1.69825 1.36471 1.22694 1.23221 0.86630 0.79194 0.79738 0.82253 1.20297 1.21345 1.20276 1.22235 0.99611 0.95574 0.81845 1.46609 1.21073 1.34161 1.28801 1.15964 0.83812 0.79868 0.80054 1.90990 1.20328 1.61598 1.68132 1.45576 1.21983 1.40432 1.31208 1.21022 0.87616 0.92057 0.95993 1.21650 1.03862 0.97850 0.91731 1.21513 0.98521 0.97659 0.97637 1.21596 0.98340 0.98675 0.97410 1.21517 1.02494 0.97530 0.93811 1.21662 0.95968 0.97655 1.00013 1.20490 0.81192 0.83463 0.83322 1.90762 1.42227 1.32429 1.68081 0.98225 0.89917 0.95195 0.95066 0.90167 0.98037 0.93002 0.89978 0.90208 0.72456 0.89493 0.90912 0.91766 0.91169 0.91685 0.91478 0.91768 0.91056 0.90449 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 7.28 37.16 0.27 -2.79 16 2 C 0.05 1.36 0.57 -155.66 -0.09 1.27 16 3 C -0.12 -3.06 7.13 37.16 0.26 -2.79 16 4 C -0.51 -13.72 8.01 -34.44 -0.28 -14.00 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 7 N -0.88 -24.70 9.35 55.43 0.52 -24.18 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.76 4.68 -4.04 -0.02 2.74 16 13 N -0.56 -10.73 2.13 -120.80 -0.26 -10.99 16 14 C 0.70 12.72 7.06 -87.81 -0.62 12.10 16 15 O -0.54 -11.50 16.33 5.33 0.09 -11.41 16 16 N -0.73 -9.52 5.24 -53.87 -0.28 -9.80 16 17 C 0.12 1.57 0.83 -133.10 -0.11 1.45 16 18 C -0.11 -1.10 4.98 -26.95 -0.13 -1.23 16 19 C -0.12 -0.84 5.81 -26.69 -0.16 -0.99 16 20 C -0.12 -0.84 5.91 -26.73 -0.16 -0.99 16 21 C -0.12 -0.94 5.81 -26.68 -0.16 -1.09 16 22 C -0.11 -1.28 4.98 -26.96 -0.13 -1.42 16 23 C 0.53 9.16 5.27 -10.70 -0.06 9.10 16 24 O -0.47 -9.09 16.91 5.60 0.09 -8.99 16 25 H 0.00 -0.03 6.20 -51.93 -0.32 -0.35 16 26 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 30 H 0.00 0.02 6.18 -51.93 -0.32 -0.31 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.08 1.80 7.86 -51.93 -0.41 1.39 16 33 H 0.08 1.70 8.01 -51.93 -0.42 1.29 16 34 H 0.43 4.47 7.74 -40.82 -0.32 4.16 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.45 7.35 -51.93 -0.38 0.06 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.50 7.35 -51.93 -0.38 0.12 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -30.87 334.55 -8.23 -39.09 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.94 Total: 1.91 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.46 Total: 3.12 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.02 Total: -44.97 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.18 Total: -20.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.87 -8.23 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335300979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.032 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds