Wall clock time and date at job start Tue Mar 31 2020 07:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.46735 * 2 1 4 4 C 1.50698 * 109.47392 * 240.00186 * 2 1 3 5 5 H 1.07992 * 119.99960 * 240.00333 * 4 2 1 6 6 C 1.37879 * 120.00059 * 59.99660 * 4 2 1 7 7 N 1.31521 * 119.99934 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47076 * 60.00366 * 8 6 4 10 10 H 1.48502 * 109.47013 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46897 * 300.00002 * 8 6 4 12 12 C 1.52999 * 109.47003 * 119.99833 * 2 1 3 13 13 N 1.46495 * 109.47305 * 300.00554 * 12 2 1 14 14 C 1.33870 * 124.19075 * 269.99705 * 13 12 2 15 15 O 1.21535 * 123.79036 * 359.96997 * 14 13 12 16 16 N 1.34683 * 112.42039 * 180.02562 * 14 13 12 17 17 C 1.46840 * 106.42661 * 359.97438 * 16 14 13 18 18 C 1.52472 * 110.53246 * 118.52554 * 17 16 14 19 19 C 1.53090 * 109.56443 * 64.22610 * 18 17 16 20 20 C 1.52998 * 109.42342 * 59.15052 * 19 18 17 21 21 C 1.53005 * 109.51993 * 299.54463 * 20 19 18 22 22 C 1.52469 * 110.53009 * 241.49243 * 17 16 14 23 23 C 1.34908 * 124.20004 * 90.00176 * 13 12 2 24 24 O 1.21232 * 127.25280 * 0.25879 * 23 13 12 25 25 H 1.08992 * 109.47283 * 299.99796 * 1 2 3 26 26 H 1.09003 * 109.46909 * 60.00211 * 1 2 3 27 27 H 1.08998 * 109.46298 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46891 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47269 * 300.00333 * 3 2 1 30 30 H 1.09002 * 109.47210 * 60.00155 * 3 2 1 31 31 H 0.96996 * 119.99797 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47110 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46844 * 60.00377 * 12 2 1 34 34 H 0.96995 * 126.78849 * 179.97438 * 16 14 13 35 35 H 1.08997 * 109.45668 * 184.25297 * 18 17 16 36 36 H 1.09003 * 109.45462 * 304.19970 * 18 17 16 37 37 H 1.08999 * 109.47747 * 299.16451 * 19 18 17 38 38 H 1.08996 * 109.48264 * 179.14455 * 19 18 17 39 39 H 1.08993 * 109.46751 * 179.52513 * 20 19 18 40 40 H 1.09006 * 109.45799 * 59.55110 * 20 19 18 41 41 H 1.08998 * 109.47858 * 300.46948 * 21 20 19 42 42 H 1.09000 * 109.48917 * 180.44397 * 21 20 19 43 43 H 1.09000 * 109.45661 * 55.80332 * 22 17 16 44 44 H 1.09004 * 109.45603 * 175.76744 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3216 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8261 -0.4205 -5.2205 11 1 3.8065 -1.1207 -4.0081 12 6 2.0401 -0.7212 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 2.2050 0.9632 3.0597 15 8 3.2771 1.3986 2.6881 16 7 1.5413 1.4257 4.1366 17 6 0.3065 0.6370 4.2337 18 6 0.2669 -0.1349 5.5479 19 6 0.2150 0.8495 6.7192 20 6 -1.0287 1.7309 6.5883 21 6 -0.9630 2.5163 5.2769 22 6 -0.9157 1.5387 4.0998 23 6 0.3879 -0.3176 3.0645 24 8 -0.4199 -1.1659 2.7521 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7088 1.1613 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6768 -1.7489 1.2492 34 1 1.8233 2.1388 4.7306 35 1 -0.6179 -0.7710 5.5689 36 1 1.1605 -0.7533 5.6328 37 1 1.1071 1.4756 6.7076 38 1 0.1714 0.2963 7.6574 39 1 -1.0709 2.4264 7.4265 40 1 -1.9203 1.1037 6.5917 41 1 -0.0673 3.1374 5.2697 42 1 -1.8454 3.1500 5.1878 43 1 -0.8542 2.0975 3.1660 44 1 -1.8188 0.9282 4.0989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335300979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:31 Heat of formation + Delta-G solvation = -80.070494 kcal Electronic energy + Delta-G solvation = -25876.028452 eV Core-core repulsion = 22406.662984 eV Total energy + Delta-G solvation = -3469.365467 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.75209 -39.77502 -39.34977 -37.75182 -36.59974 -34.69957 -32.81598 -31.88840 -30.78193 -28.06965 -27.70716 -27.16037 -25.03151 -23.76446 -23.39004 -21.91280 -20.93015 -20.02344 -18.85441 -18.30290 -17.62108 -17.51022 -16.63985 -16.52730 -16.24331 -16.17996 -15.40036 -15.22606 -15.16959 -14.86320 -14.52557 -14.22422 -13.93045 -13.70132 -13.28586 -13.22858 -13.20352 -13.09605 -12.69836 -12.59292 -12.30596 -12.24729 -12.16422 -12.01737 -11.93877 -11.62892 -11.47409 -11.42037 -11.38034 -10.89937 -10.72237 -10.51254 -10.40201 -10.28206 -8.02916 -6.21098 0.63419 1.30772 1.44920 1.45332 1.52652 2.05183 2.20997 2.45377 2.94735 3.20191 3.47442 3.59549 4.04202 4.07935 4.12460 4.20974 4.39526 4.41857 4.49433 4.50509 4.57592 4.57901 4.65146 4.81639 4.89788 4.95520 5.01101 5.03063 5.09466 5.11718 5.16989 5.21024 5.34135 5.35901 5.42379 5.54087 5.56398 5.62354 5.86161 5.99935 6.10037 6.20386 6.35317 6.46641 6.83309 7.18790 7.46502 8.96558 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.004545 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.966941 B = 6158.689216 C = 6288.186161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.048 3.952 3 C -0.100 4.100 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.905 5.905 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.136 3.864 13 N -0.573 5.573 14 C 0.697 3.303 15 O -0.575 6.575 16 N -0.699 5.699 17 C 0.135 3.865 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.114 4.114 23 C 0.519 3.481 24 O -0.492 6.492 25 H 0.009 0.991 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.008 0.992 31 H 0.260 0.740 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.448 0.552 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 2.543 20.888 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.047 3.953 3 C -0.158 4.158 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.015 3.985 13 N -0.317 5.317 14 C 0.398 3.602 15 O -0.451 6.451 16 N -0.365 5.365 17 C 0.045 3.955 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.153 4.153 23 C 0.308 3.692 24 O -0.363 6.363 25 H 0.028 0.972 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.295 0.705 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.539 2.360 20.296 20.931 hybrid contribution 0.565 -0.172 -1.337 1.461 sum -3.975 2.188 18.959 19.494 Atomic orbital electron populations 1.21539 0.97585 0.98220 0.98783 1.18481 0.92797 0.92889 0.91163 1.21498 0.97569 0.98159 0.98535 1.21214 1.31969 1.12410 0.91048 0.92567 1.25592 0.95003 0.95562 1.01458 1.69955 1.37086 1.23619 1.23692 0.85680 0.78681 0.78780 0.78877 1.19735 1.21030 1.19901 1.21825 0.99223 0.95450 0.81965 1.46618 1.22077 1.34610 1.28361 1.16095 0.83540 0.79638 0.80882 1.90964 1.21980 1.62732 1.69423 1.45432 1.21340 1.40152 1.29605 1.21159 0.87718 0.91311 0.95343 1.21713 1.04016 0.98256 0.90779 1.21538 0.99123 0.97266 0.96914 1.21598 0.98183 0.98829 0.97044 1.21534 1.03388 0.96942 0.93004 1.21710 0.95037 0.97861 1.00647 1.21340 0.80036 0.83683 0.84172 1.90739 1.42754 1.33732 1.69071 0.97192 0.92318 0.96099 0.96448 0.92519 0.97275 0.93078 0.90505 0.90157 0.70464 0.89027 0.91222 0.91104 0.89265 0.89673 0.91135 0.91225 0.89901 0.92765 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.28 7.28 71.99 0.52 -4.76 16 2 C 0.05 2.43 0.57 -52.92 -0.03 2.40 16 3 C -0.10 -5.21 7.13 71.98 0.51 -4.70 16 4 C -0.53 -29.07 8.01 25.60 0.21 -28.86 16 5 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 6 C 0.02 1.28 5.15 84.65 0.44 1.72 16 7 N -0.91 -51.48 9.35 21.45 0.20 -51.28 16 8 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.14 6.05 4.68 86.38 0.40 6.46 16 13 N -0.57 -21.96 2.13 -773.23 -1.65 -23.61 16 14 C 0.70 25.06 7.06 179.37 1.27 26.32 16 15 O -0.57 -24.73 16.33 -3.83 -0.06 -24.79 16 16 N -0.70 -17.19 5.24 -442.69 -2.32 -19.51 16 17 C 0.14 3.19 0.83 2.59 0.00 3.19 16 18 C -0.11 -1.85 4.98 30.45 0.15 -1.70 16 19 C -0.11 -1.16 5.81 30.62 0.18 -0.98 16 20 C -0.12 -1.12 5.91 30.60 0.18 -0.94 16 21 C -0.11 -1.44 5.81 30.62 0.18 -1.26 16 22 C -0.11 -2.35 4.98 30.45 0.15 -2.20 16 23 C 0.52 17.80 5.27 87.78 0.46 18.26 16 24 O -0.49 -19.22 16.91 -2.88 -0.05 -19.27 16 25 H 0.01 0.44 6.20 -2.39 -0.01 0.43 16 26 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.02 0.90 8.10 -2.39 -0.02 0.88 16 29 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 30 H 0.01 0.41 6.18 -2.39 -0.01 0.40 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.08 3.45 7.86 -2.39 -0.02 3.43 16 33 H 0.08 3.51 8.01 -2.39 -0.02 3.49 16 34 H 0.45 8.15 7.74 -92.71 -0.72 7.44 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.07 0.68 7.35 -2.39 -0.02 0.66 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.07 0.84 7.35 -2.39 -0.02 0.82 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -67.89 334.55 3.05 -64.83 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.28 Total: 14.81 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 4.62 Total: 12.96 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -3.77 Total: -94.40 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.11 Total: -44.07 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.89 3.05 -64.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335300979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.237 kcal (2) G-P(sol) polarization free energy of solvation -67.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds