Wall clock time and date at job start Tue Mar 31 2020 07:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34888 * 116.99989 * 2 1 4 4 O 1.21615 * 120.00413 * 0.02562 * 3 2 1 5 5 C 1.46497 * 119.99624 * 179.97438 * 3 2 1 6 6 C 1.37993 * 126.25799 * 180.02562 * 5 3 2 7 7 C 1.39805 * 106.96478 * 180.02562 * 6 5 3 8 8 C 1.50697 * 126.07748 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47066 * 90.00215 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46923 * 299.99733 * 11 10 9 13 13 C 1.52999 * 109.46998 * 59.99872 * 11 10 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46757 * 60.00769 * 19 17 15 21 21 H 1.48495 * 109.46824 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47105 * 300.00477 * 19 17 15 23 23 C 1.35487 * 107.84013 * 0.26268 * 7 6 5 24 24 N 1.34954 * 108.98438 * 359.56665 * 23 7 6 25 25 H 0.97009 * 125.63393 * 180.14852 * 24 23 7 26 26 H 1.09001 * 109.47397 * 300.00232 * 1 2 3 27 27 H 1.09000 * 109.46519 * 59.99935 * 1 2 3 28 28 H 1.09000 * 109.47138 * 179.97438 * 1 2 3 29 29 H 1.08000 * 126.52012 * 359.96855 * 6 5 3 30 30 H 1.09001 * 109.47558 * 330.00378 * 8 7 6 31 31 H 1.08998 * 109.47216 * 210.00040 * 8 7 6 32 32 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 35 35 H 1.09002 * 109.47301 * 60.00027 * 12 11 10 36 36 H 1.09001 * 109.47017 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47249 * 300.00302 * 12 11 10 38 38 H 1.09001 * 109.46999 * 60.00126 * 13 11 10 39 39 H 1.09001 * 109.46478 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.47197 * 299.99817 * 13 11 10 41 41 H 1.08993 * 109.47740 * 299.99810 * 14 11 10 42 42 H 1.09005 * 109.47573 * 59.99976 * 14 11 10 43 43 H 0.97002 * 120.00555 * 179.97438 * 18 17 15 44 44 H 1.08001 * 125.50384 * 179.71563 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5274 1.2784 0.0006 6 6 4.2842 2.4323 0.0011 7 6 5.6261 2.0400 0.0009 8 6 6.8197 2.9600 0.0008 9 7 7.2077 3.2588 1.3859 10 6 8.3704 4.1558 1.4249 11 6 8.7443 4.4429 2.8805 12 6 7.5627 5.1085 3.5888 13 6 9.0888 3.1302 3.5870 14 6 9.9556 5.3766 2.9212 15 6 10.3235 5.6599 4.3549 16 1 9.7509 5.2178 5.1568 17 6 11.3918 6.4826 4.6428 18 7 12.0895 7.0206 3.6664 19 14 11.8484 6.8332 6.4200 20 1 12.1819 5.5590 7.1059 21 1 13.0240 7.7395 6.4595 22 1 10.7019 7.4801 7.1072 23 6 5.6626 0.6856 -0.0056 24 7 4.3988 0.2124 0.0001 25 1 4.1460 -0.7242 -0.0007 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9110 3.4458 0.0008 30 1 6.5641 3.8868 -0.5128 31 1 7.6507 2.4770 -0.5131 32 1 7.3874 2.4107 1.9020 33 1 9.2124 3.6814 0.9207 34 1 8.1251 5.0907 0.9212 35 1 6.6999 4.4429 3.5598 36 1 7.8292 5.3134 4.6257 37 1 7.3172 6.0436 3.0855 38 1 9.9306 2.6561 3.0823 39 1 9.3556 3.3349 4.6238 40 1 8.2261 2.4647 3.5580 41 1 10.7973 4.9022 2.4167 42 1 9.7106 6.3119 2.4177 43 1 12.8408 7.5997 3.8689 44 1 6.5584 0.0823 -0.0118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342282085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:26 Heat of formation + Delta-G solvation = -55.949930 kcal Electronic energy + Delta-G solvation = -22985.965606 eV Core-core repulsion = 19517.646085 eV Total energy + Delta-G solvation = -3468.319521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65671 -40.13354 -37.57708 -36.70168 -34.61057 -32.34877 -31.09039 -30.16994 -28.02094 -26.98372 -26.27158 -25.93669 -24.06444 -23.48150 -22.03676 -20.52868 -19.97515 -18.83029 -17.66362 -17.29416 -16.71918 -16.18740 -16.02813 -15.19880 -14.84976 -14.54045 -14.22216 -13.96534 -13.89622 -13.61242 -13.32631 -13.13948 -12.66655 -12.55074 -12.51128 -12.25225 -11.94337 -11.59426 -11.53089 -11.18445 -10.98215 -10.90185 -10.80806 -10.74150 -10.43032 -10.20503 -10.08961 -9.62028 -9.15548 -8.93817 -8.78767 -8.51875 -8.27377 -7.94751 -5.92125 -3.91985 0.99272 2.31114 2.38169 2.88673 2.92359 3.37581 3.42052 3.44493 4.50961 4.56027 4.72108 4.72921 4.81068 4.82402 5.04210 5.08551 5.13362 5.43481 5.48342 5.66441 5.79189 5.84159 5.89379 5.97679 6.01660 6.05538 6.31480 6.40333 6.52767 6.57844 6.67172 6.74208 6.85937 6.89588 7.10690 7.27063 7.31055 7.33528 7.45358 7.49123 7.74210 7.79456 7.91634 8.08499 8.53243 9.13246 9.70435 11.19450 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033376 B = 0.002400 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.720918 B =11662.259275 C =11929.344369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.368 6.368 3 C 0.537 3.463 4 O -0.499 6.499 5 C -0.059 4.059 6 C -0.064 4.064 7 C -0.169 4.169 8 C 0.128 3.872 9 N -0.682 5.682 10 C 0.069 3.931 11 C -0.058 4.058 12 C -0.116 4.116 13 C -0.129 4.129 14 C 0.034 3.966 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.044 3.956 24 N -0.527 5.527 25 H 0.422 0.578 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.337 0.663 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.018 -17.370 -9.947 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.286 6.286 3 C 0.382 3.618 4 O -0.387 6.387 5 C -0.169 4.169 6 C -0.091 4.091 7 C -0.176 4.176 8 C -0.001 4.001 9 N -0.314 5.314 10 C -0.059 4.059 11 C -0.058 4.058 12 C -0.173 4.173 13 C -0.186 4.186 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.147 4.147 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.095 4.095 24 N -0.122 5.122 25 H 0.260 0.740 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.170 0.830 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.156 0.844 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.068 0.932 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.665 -16.590 -9.914 26.868 hybrid contribution 0.807 -0.759 0.699 1.310 sum -17.858 -17.349 -9.215 26.549 Atomic orbital electron populations 1.23269 0.75620 1.03708 1.02868 1.86543 1.24005 1.32995 1.85018 1.19845 0.87077 0.81657 0.73173 1.90917 1.65444 1.35767 1.46546 1.19223 0.86315 0.88481 1.22836 1.21302 0.91655 0.96938 0.99175 1.19445 0.94869 0.92678 1.10566 1.20232 0.92078 0.96909 0.90930 1.60587 1.39252 1.19891 1.11689 1.22120 0.89422 0.95916 0.98451 1.20617 0.97549 0.96171 0.91486 1.21598 0.96429 0.98974 1.00344 1.21767 0.98552 0.96363 1.01922 1.19123 0.90803 0.93456 0.97011 1.21210 1.12908 1.27882 0.92429 0.92374 1.25021 0.96629 0.96269 0.96746 1.69956 1.19966 1.32710 1.31158 0.86727 0.77850 0.78090 0.85728 1.20406 1.21495 1.20325 1.21898 0.87129 0.95286 1.05180 1.41750 1.05731 1.08651 1.56083 0.73999 0.91628 0.91716 0.88028 0.83014 0.90354 0.94969 0.84366 0.95934 0.91517 0.93810 0.92834 0.94174 0.94168 0.91817 0.94800 0.96945 0.96665 0.93154 0.80947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.31 16 2 O -0.37 -3.38 10.58 -41.01 -0.43 -3.81 16 3 C 0.54 6.24 7.93 34.06 0.27 6.51 16 4 O -0.50 -7.15 16.68 -19.35 -0.32 -7.47 16 5 C -0.06 -0.65 7.10 -82.00 -0.58 -1.23 16 6 C -0.06 -0.77 10.60 -39.09 -0.41 -1.18 16 7 C -0.17 -1.85 5.62 -105.02 -0.59 -2.44 16 8 C 0.13 1.53 6.17 -4.97 -0.03 1.50 16 9 N -0.68 -9.76 5.70 -115.05 -0.66 -10.41 16 10 C 0.07 1.18 4.65 -3.82 -0.02 1.17 16 11 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 12 C -0.12 -2.30 8.06 37.16 0.30 -2.00 16 13 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 14 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 15 C -0.51 -13.90 7.65 -34.44 -0.26 -14.17 16 16 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.04 0.37 11.78 -17.16 -0.20 0.16 16 24 N -0.53 -4.25 6.07 -9.53 -0.06 -4.31 16 25 H 0.42 2.20 8.96 -40.82 -0.37 1.83 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.34 4.62 6.76 -39.29 -0.27 4.35 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 36 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 40 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -32.62 364.09 -7.72 -40.34 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.98 Total: 1.21 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -0.47 Total: -11.52 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.02 Total: -40.94 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.76 Total: -11.28 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.62 -7.72 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342282085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.607 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds