Wall clock time and date at job start Tue Mar 31 2020 07:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34888 * 116.99989 * 2 1 4 4 O 1.21615 * 120.00413 * 0.02562 * 3 2 1 5 5 C 1.46497 * 119.99624 * 179.97438 * 3 2 1 6 6 C 1.37993 * 126.25799 * 180.02562 * 5 3 2 7 7 C 1.39805 * 106.96478 * 180.02562 * 6 5 3 8 8 C 1.50697 * 126.07748 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47066 * 90.00215 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46923 * 299.99733 * 11 10 9 13 13 C 1.52999 * 109.46998 * 59.99872 * 11 10 9 14 14 C 1.52996 * 109.46700 * 179.97438 * 11 10 9 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46757 * 60.00769 * 19 17 15 21 21 H 1.48495 * 109.46824 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47105 * 300.00477 * 19 17 15 23 23 C 1.35487 * 107.84013 * 0.26268 * 7 6 5 24 24 N 1.34954 * 108.98438 * 359.56665 * 23 7 6 25 25 H 0.97009 * 125.63393 * 180.14852 * 24 23 7 26 26 H 1.09001 * 109.47397 * 300.00232 * 1 2 3 27 27 H 1.09000 * 109.46519 * 59.99935 * 1 2 3 28 28 H 1.09000 * 109.47138 * 179.97438 * 1 2 3 29 29 H 1.08000 * 126.52012 * 359.96855 * 6 5 3 30 30 H 1.09001 * 109.47558 * 330.00378 * 8 7 6 31 31 H 1.08998 * 109.47216 * 210.00040 * 8 7 6 32 32 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 33 33 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 34 34 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 35 35 H 1.09002 * 109.47301 * 60.00027 * 12 11 10 36 36 H 1.09001 * 109.47017 * 180.02562 * 12 11 10 37 37 H 1.09005 * 109.47249 * 300.00302 * 12 11 10 38 38 H 1.09001 * 109.46999 * 60.00126 * 13 11 10 39 39 H 1.09001 * 109.46478 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.47197 * 299.99817 * 13 11 10 41 41 H 1.08993 * 109.47740 * 299.99810 * 14 11 10 42 42 H 1.09005 * 109.47573 * 59.99976 * 14 11 10 43 43 H 0.97002 * 120.00555 * 179.97438 * 18 17 15 44 44 H 1.08001 * 125.50384 * 179.71563 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5274 1.2784 0.0006 6 6 4.2842 2.4323 0.0011 7 6 5.6261 2.0400 0.0009 8 6 6.8197 2.9600 0.0008 9 7 7.2077 3.2588 1.3859 10 6 8.3704 4.1558 1.4249 11 6 8.7443 4.4429 2.8805 12 6 7.5627 5.1085 3.5888 13 6 9.0888 3.1302 3.5870 14 6 9.9556 5.3766 2.9212 15 6 10.3235 5.6599 4.3549 16 1 9.7509 5.2178 5.1568 17 6 11.3918 6.4826 4.6428 18 7 12.0895 7.0206 3.6664 19 14 11.8484 6.8332 6.4200 20 1 12.1819 5.5590 7.1059 21 1 13.0240 7.7395 6.4595 22 1 10.7019 7.4801 7.1072 23 6 5.6626 0.6856 -0.0056 24 7 4.3988 0.2124 0.0001 25 1 4.1460 -0.7242 -0.0007 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9110 3.4458 0.0008 30 1 6.5641 3.8868 -0.5128 31 1 7.6507 2.4770 -0.5131 32 1 7.3874 2.4107 1.9020 33 1 9.2124 3.6814 0.9207 34 1 8.1251 5.0907 0.9212 35 1 6.6999 4.4429 3.5598 36 1 7.8292 5.3134 4.6257 37 1 7.3172 6.0436 3.0855 38 1 9.9306 2.6561 3.0823 39 1 9.3556 3.3349 4.6238 40 1 8.2261 2.4647 3.5580 41 1 10.7973 4.9022 2.4167 42 1 9.7106 6.3119 2.4177 43 1 12.8408 7.5997 3.8689 44 1 6.5584 0.0823 -0.0118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342282085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:25 Heat of formation + Delta-G solvation = -76.791517 kcal Electronic energy + Delta-G solvation = -22986.869365 eV Core-core repulsion = 19517.646085 eV Total energy + Delta-G solvation = -3469.223280 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.42948 -40.93677 -39.08596 -37.53035 -35.96124 -34.28037 -32.12520 -30.98038 -29.08090 -28.52871 -27.83760 -27.16575 -25.57980 -24.26406 -23.69782 -21.32696 -20.76128 -19.81835 -19.10803 -18.28804 -18.10476 -17.48665 -16.81754 -16.60566 -16.27186 -15.74653 -15.46534 -15.06044 -14.84594 -14.59359 -14.52710 -14.24705 -14.03290 -13.84984 -13.76751 -13.55245 -13.08300 -12.99070 -12.70469 -12.65529 -12.63045 -12.27798 -12.17860 -12.09565 -11.89033 -11.88383 -11.83800 -11.31577 -10.81387 -10.71755 -10.46775 -9.90029 -9.34737 -9.05786 -8.10855 -6.17492 0.17266 1.42359 1.44797 1.51913 1.59348 1.60182 2.05812 2.23517 2.46152 3.22661 3.60090 3.87479 4.12196 4.13837 4.25960 4.27886 4.30937 4.31411 4.35513 4.46152 4.63943 4.70903 4.78916 4.89692 4.92548 4.99974 5.03404 5.13881 5.17630 5.22965 5.26898 5.27978 5.56403 5.58749 5.63463 5.68835 5.71126 5.85992 5.93197 5.97206 6.21962 6.42339 6.51581 6.64066 6.70426 6.97607 7.49329 9.01070 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033376 B = 0.002400 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.720918 B =11662.259275 C =11929.344369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.538 3.462 4 O -0.537 6.537 5 C -0.074 4.074 6 C -0.085 4.085 7 C -0.191 4.191 8 C 0.132 3.868 9 N -0.683 5.683 10 C 0.083 3.917 11 C -0.055 4.055 12 C -0.107 4.107 13 C -0.121 4.121 14 C 0.039 3.961 15 C -0.513 4.513 16 H 0.065 0.935 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.270 1.270 23 C 0.072 3.928 24 N -0.509 5.509 25 H 0.438 0.562 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.345 0.655 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.027 0.973 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.068 0.932 41 H -0.013 1.013 42 H -0.018 1.018 43 H 0.259 0.741 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.641 -20.229 -9.393 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.385 3.615 4 O -0.428 6.428 5 C -0.184 4.184 6 C -0.112 4.112 7 C -0.197 4.197 8 C 0.003 3.997 9 N -0.316 5.316 10 C -0.047 4.047 11 C -0.055 4.055 12 C -0.164 4.164 13 C -0.178 4.178 14 C 0.002 3.998 15 C -0.551 4.551 16 H 0.083 0.917 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.781 3.219 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.196 1.196 23 C -0.068 4.068 24 N -0.105 5.105 25 H 0.279 0.721 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.165 0.835 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.005 0.995 42 H 0.001 0.999 43 H 0.068 0.932 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -19.320 -19.506 -9.358 29.006 hybrid contribution 0.951 0.076 0.465 1.061 sum -18.369 -19.430 -8.893 28.179 Atomic orbital electron populations 1.23588 0.73999 1.05978 1.02657 1.86535 1.25572 1.31501 1.84393 1.19998 0.87394 0.81781 0.72315 1.90894 1.66294 1.37062 1.48545 1.19106 0.86378 0.89102 1.23846 1.21329 0.92772 0.96860 1.00220 1.19346 0.93734 0.93814 1.12771 1.20172 0.93036 0.97068 0.89387 1.60496 1.37425 1.19991 1.13640 1.21802 0.90611 0.96261 0.95991 1.20484 0.95203 0.95869 0.93953 1.21503 0.97040 0.98930 0.98966 1.21673 1.00048 0.95862 1.00262 1.19012 0.92326 0.93045 0.95434 1.21598 1.12642 1.27318 0.93579 0.91727 1.25925 0.96834 0.96324 1.01170 1.70100 1.20635 1.33667 1.33458 0.85641 0.77558 0.78256 0.80439 1.19179 1.21404 1.19563 1.22395 0.88075 0.94583 1.01761 1.41733 1.05208 1.08960 1.54563 0.72073 0.92042 0.91848 0.84478 0.84667 0.91421 0.93276 0.83536 0.95853 0.92823 0.91631 0.94473 0.95372 0.94079 0.93748 0.91369 0.99479 0.99924 0.93218 0.77116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.11 10.58 -58.02 -0.61 -6.73 16 3 C 0.54 12.25 7.93 69.97 0.55 12.81 16 4 O -0.54 -15.74 16.68 19.46 0.32 -15.42 16 5 C -0.07 -1.54 7.10 40.32 0.29 -1.26 16 6 C -0.08 -2.00 10.60 22.59 0.24 -1.76 16 7 C -0.19 -3.78 5.62 -20.12 -0.11 -3.89 16 8 C 0.13 2.92 6.17 85.55 0.53 3.45 16 9 N -0.68 -18.20 5.70 -517.92 -2.95 -21.16 16 10 C 0.08 2.76 4.65 86.30 0.40 3.17 16 11 C -0.05 -2.17 0.60 -52.18 -0.03 -2.20 16 12 C -0.11 -4.19 8.06 71.98 0.58 -3.61 16 13 C -0.12 -4.27 7.89 71.98 0.57 -3.71 16 14 C 0.04 2.05 4.04 29.85 0.12 2.17 16 15 C -0.51 -28.58 7.65 25.60 0.20 -28.38 16 16 H 0.06 3.45 5.68 -2.91 -0.02 3.44 16 17 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 18 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 19 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 C 0.07 0.94 11.78 83.58 0.98 1.92 16 24 N -0.51 -6.64 6.07 -184.06 -1.12 -7.75 16 25 H 0.44 2.95 8.96 -92.70 -0.83 2.12 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.34 8.29 6.76 -89.69 -0.61 7.69 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.27 7.60 -2.39 -0.02 2.25 16 36 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 37 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.04 1.73 6.62 -2.39 -0.02 1.71 16 40 H 0.07 1.93 6.57 -2.39 -0.02 1.91 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -72.74 364.09 3.50 -69.24 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.43 Total: 11.95 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 5.97 Total: -19.63 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -3.79 Total: -86.23 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.29 Total: -22.14 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.74 3.50 -69.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342282085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.552 kcal (2) G-P(sol) polarization free energy of solvation -72.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds