Wall clock time and date at job start Tue Mar 31 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.50710 * 109.46829 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.37838 * 90.00198 * 4 3 2 6 6 C 1.36067 * 108.47551 * 179.73134 * 5 4 3 7 7 C 1.47416 * 126.44783 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00363 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00042 * 359.97438 * 7 6 5 10 10 C 1.46505 * 120.00343 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47281 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47348 * 300.00010 * 11 10 9 13 13 C 1.53005 * 109.46758 * 60.00130 * 11 10 9 14 14 C 1.53004 * 109.46821 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.46982 * 179.97438 * 14 11 10 16 16 H 1.08005 * 119.99942 * 0.02562 * 15 14 11 17 17 C 1.37869 * 120.00043 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99997 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00287 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47280 * 89.99288 * 19 17 15 21 21 H 1.48495 * 109.47250 * 210.00081 * 19 17 15 22 22 H 1.48506 * 109.46788 * 330.00101 * 19 17 15 23 23 C 1.36091 * 107.10305 * 359.97438 * 6 5 4 24 24 O 1.34047 * 125.37563 * 269.68701 * 4 3 2 25 25 H 1.09008 * 109.46664 * 59.99945 * 1 2 3 26 26 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47052 * 300.00652 * 1 2 3 28 28 H 1.09004 * 109.47546 * 239.99187 * 2 1 3 29 29 H 1.09003 * 109.46755 * 119.99573 * 2 1 3 30 30 H 1.08993 * 109.47401 * 59.99858 * 3 2 1 31 31 H 1.09003 * 109.46845 * 299.99518 * 3 2 1 32 32 H 0.97008 * 120.00120 * 359.97438 * 9 7 6 33 33 H 1.08994 * 109.46991 * 300.00117 * 10 9 7 34 34 H 1.08998 * 109.46828 * 59.99897 * 10 9 7 35 35 H 1.08996 * 109.46787 * 60.00127 * 12 11 10 36 36 H 1.09000 * 109.47183 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.47192 * 300.00209 * 12 11 10 38 38 H 1.08994 * 109.47252 * 59.99886 * 13 11 10 39 39 H 1.09000 * 109.46732 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.47024 * 299.99652 * 13 11 10 41 41 H 1.08994 * 109.47509 * 300.00310 * 14 11 10 42 42 H 1.08998 * 109.46770 * 60.00372 * 14 11 10 43 43 H 0.96999 * 119.99830 * 180.02562 * 18 17 15 44 44 H 1.07993 * 126.52411 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2998 1.4421 -1.0585 6 6 5.6015 1.4481 -0.6623 7 6 6.7846 1.4495 -1.5418 8 8 7.9010 1.4546 -1.0593 9 7 6.6292 1.4441 -2.8805 10 6 7.8049 1.4449 -3.7546 11 6 7.3536 1.4373 -5.2165 12 6 6.5187 0.1839 -5.4861 13 6 6.5095 2.6824 -5.4960 14 6 8.5816 1.4388 -6.1292 15 6 8.1372 1.4308 -7.5692 16 1 7.0841 1.4255 -7.8093 17 6 9.0747 1.4300 -8.5800 18 7 8.6868 1.4235 -9.8367 19 14 10.8959 1.4383 -8.1648 20 1 11.3836 0.0405 -8.0489 21 1 11.6455 2.1367 -9.2397 22 1 11.1064 2.1444 -6.8754 23 6 5.6057 1.4526 0.6986 24 8 4.3227 1.4484 1.0939 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8934 -0.5140 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 5.7387 1.4389 -3.2654 33 1 8.4000 2.3376 -3.5622 34 1 8.4061 0.5577 -3.5557 35 1 5.6439 0.1834 -4.8358 36 1 6.1976 0.1784 -6.5277 37 1 7.1200 -0.7030 -5.2869 38 1 7.1043 3.5753 -5.3040 39 1 6.1883 2.6773 -6.5376 40 1 5.6347 2.6818 -4.8457 41 1 9.1761 2.3319 -5.9371 42 1 9.1833 0.5521 -5.9301 43 1 9.3465 1.4226 -10.5478 44 1 6.4755 1.4574 1.3386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345732494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:21 Heat of formation + Delta-G solvation = -44.716149 kcal Electronic energy + Delta-G solvation = -23391.516155 eV Core-core repulsion = 19923.683767 eV Total energy + Delta-G solvation = -3467.832388 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.66648 -39.53646 -37.20664 -35.85699 -34.91592 -33.58418 -32.06016 -30.96424 -27.91058 -27.52895 -26.54730 -26.51576 -24.01373 -22.69495 -22.22868 -21.26941 -20.36621 -18.74038 -17.68372 -17.02853 -16.86799 -16.54068 -15.72689 -15.49594 -15.08237 -15.04693 -14.23492 -14.09915 -13.77676 -13.68221 -13.51380 -13.38128 -12.68957 -12.64133 -12.36311 -12.26180 -12.23765 -11.84593 -11.42430 -11.21877 -11.19640 -11.08424 -11.04715 -10.98431 -10.59377 -10.46923 -10.23011 -9.94770 -9.73295 -9.47804 -9.27026 -8.97683 -8.79470 -8.51878 -6.02514 -3.99637 0.92079 1.81223 2.30453 3.19612 3.30555 3.32833 3.40745 3.44871 3.63786 4.42844 4.47191 4.48345 4.56834 4.71760 4.85661 5.04926 5.16465 5.29670 5.30118 5.31726 5.38258 5.41594 5.54298 5.59260 5.67554 5.68072 5.81114 5.85539 6.14081 6.14604 6.19616 6.36062 6.48108 6.63218 6.69545 6.92420 7.04641 7.07892 7.21583 7.22667 7.38487 7.68040 7.81105 8.25857 8.55036 9.01847 9.60166 11.10271 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.003005 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.708789 B = 9316.603505 C =10212.066757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.024 4.024 4 C 0.197 3.803 5 N -0.457 5.457 6 C -0.066 4.066 7 C 0.594 3.406 8 O -0.544 6.544 9 N -0.700 5.700 10 C 0.124 3.876 11 C -0.062 4.062 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.002 4.002 15 C -0.510 4.510 16 H 0.078 0.922 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.875 3.125 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.265 1.265 23 C 0.007 3.993 24 O -0.198 6.198 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.262 0.738 44 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.675 -0.754 22.395 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.062 4.062 4 C -0.013 4.013 5 N -0.187 5.187 6 C -0.186 4.186 7 C 0.379 3.621 8 O -0.422 6.422 9 N -0.351 5.351 10 C 0.001 3.999 11 C -0.063 4.063 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.040 4.040 15 C -0.548 4.548 16 H 0.096 0.904 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.067 4.067 24 O -0.084 6.084 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.246 0.754 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -14.031 -0.745 21.905 26.024 hybrid contribution 1.068 -0.004 0.559 1.206 sum -12.963 -0.748 22.464 25.947 Atomic orbital electron populations 1.21754 0.94483 1.02402 1.02254 1.21556 0.96640 0.94578 1.03359 1.20245 0.80671 0.99736 1.05519 1.26337 0.96378 1.00224 0.78322 1.70784 1.00729 1.17285 1.29903 1.21921 0.92192 1.11339 0.93128 1.16774 0.86012 0.77112 0.82243 1.90816 1.24273 1.51603 1.75529 1.46003 1.11678 1.72374 1.04997 1.21738 0.86529 1.01968 0.89640 1.20693 0.98334 0.95919 0.91345 1.21783 0.97891 0.96665 1.02366 1.21780 0.97840 0.96717 1.02350 1.19598 0.92407 0.96546 0.95438 1.21080 0.95250 1.50300 0.88137 0.90358 1.24997 0.98728 0.94766 0.94975 1.69904 1.34101 1.51417 0.98924 0.86856 0.86028 0.78497 0.78375 1.20390 1.21524 1.18980 1.25276 0.84732 1.00923 0.95772 1.84379 1.16726 1.69317 1.37939 0.92114 0.92095 0.92425 0.90775 0.91446 0.88717 0.87269 0.75395 0.91504 0.91524 0.94840 0.90808 0.93427 0.93419 0.90811 0.94837 0.96318 0.96774 0.92815 0.75337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.71 5.92 -26.73 -0.16 -0.86 16 3 C -0.02 -0.14 5.84 -27.88 -0.16 -0.31 16 4 C 0.20 1.97 7.56 -13.08 -0.10 1.87 16 5 N -0.46 -5.77 11.06 -7.65 -0.08 -5.86 16 6 C -0.07 -0.88 6.99 -83.02 -0.58 -1.47 16 7 C 0.59 9.49 7.81 -12.52 -0.10 9.39 16 8 O -0.54 -9.99 16.89 5.26 0.09 -9.90 16 9 N -0.70 -11.00 4.96 -61.38 -0.30 -11.30 16 10 C 0.12 2.16 4.56 -4.04 -0.02 2.14 16 11 C -0.06 -1.18 0.54 -154.50 -0.08 -1.26 16 12 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 13 C -0.13 -2.34 8.05 37.16 0.30 -2.05 16 14 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 15 C -0.51 -13.76 8.20 -34.44 -0.28 -14.05 16 16 H 0.08 2.24 5.92 -52.48 -0.31 1.93 16 17 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 19 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 23 C 0.01 0.07 11.95 29.96 0.36 0.43 16 24 O -0.20 -1.98 10.73 6.52 0.07 -1.91 16 25 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.41 6.05 5.89 -40.82 -0.24 5.81 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 36 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.48 6.62 -51.93 -0.34 1.13 16 40 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 42 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.23 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -32.27 359.24 -6.01 -38.28 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.96 Total: 1.79 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.34 Total: -6.85 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.38 Total: -43.79 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.16 Total: -11.82 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.27 -6.01 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345732494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.438 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds