Wall clock time and date at job start Tue Mar 31 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.50710 * 109.46829 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.37838 * 90.00198 * 4 3 2 6 6 C 1.36067 * 108.47551 * 179.73134 * 5 4 3 7 7 C 1.47416 * 126.44783 * 179.97438 * 6 5 4 8 8 O 1.21614 * 120.00363 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00042 * 359.97438 * 7 6 5 10 10 C 1.46505 * 120.00343 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47281 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47348 * 300.00010 * 11 10 9 13 13 C 1.53005 * 109.46758 * 60.00130 * 11 10 9 14 14 C 1.53004 * 109.46821 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.46982 * 179.97438 * 14 11 10 16 16 H 1.08005 * 119.99942 * 0.02562 * 15 14 11 17 17 C 1.37869 * 120.00043 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99997 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00287 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47280 * 89.99288 * 19 17 15 21 21 H 1.48495 * 109.47250 * 210.00081 * 19 17 15 22 22 H 1.48506 * 109.46788 * 330.00101 * 19 17 15 23 23 C 1.36091 * 107.10305 * 359.97438 * 6 5 4 24 24 O 1.34047 * 125.37563 * 269.68701 * 4 3 2 25 25 H 1.09008 * 109.46664 * 59.99945 * 1 2 3 26 26 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47052 * 300.00652 * 1 2 3 28 28 H 1.09004 * 109.47546 * 239.99187 * 2 1 3 29 29 H 1.09003 * 109.46755 * 119.99573 * 2 1 3 30 30 H 1.08993 * 109.47401 * 59.99858 * 3 2 1 31 31 H 1.09003 * 109.46845 * 299.99518 * 3 2 1 32 32 H 0.97008 * 120.00120 * 359.97438 * 9 7 6 33 33 H 1.08994 * 109.46991 * 300.00117 * 10 9 7 34 34 H 1.08998 * 109.46828 * 59.99897 * 10 9 7 35 35 H 1.08996 * 109.46787 * 60.00127 * 12 11 10 36 36 H 1.09000 * 109.47183 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.47192 * 300.00209 * 12 11 10 38 38 H 1.08994 * 109.47252 * 59.99886 * 13 11 10 39 39 H 1.09000 * 109.46732 * 179.97438 * 13 11 10 40 40 H 1.08996 * 109.47024 * 299.99652 * 13 11 10 41 41 H 1.08994 * 109.47509 * 300.00310 * 14 11 10 42 42 H 1.08998 * 109.46770 * 60.00372 * 14 11 10 43 43 H 0.96999 * 119.99830 * 180.02562 * 18 17 15 44 44 H 1.07993 * 126.52411 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4423 0.0006 5 7 4.2998 1.4421 -1.0585 6 6 5.6015 1.4481 -0.6623 7 6 6.7846 1.4495 -1.5418 8 8 7.9010 1.4546 -1.0593 9 7 6.6292 1.4441 -2.8805 10 6 7.8049 1.4449 -3.7546 11 6 7.3536 1.4373 -5.2165 12 6 6.5187 0.1839 -5.4861 13 6 6.5095 2.6824 -5.4960 14 6 8.5816 1.4388 -6.1292 15 6 8.1372 1.4308 -7.5692 16 1 7.0841 1.4255 -7.8093 17 6 9.0747 1.4300 -8.5800 18 7 8.6868 1.4235 -9.8367 19 14 10.8959 1.4383 -8.1648 20 1 11.3836 0.0405 -8.0489 21 1 11.6455 2.1367 -9.2397 22 1 11.1064 2.1444 -6.8754 23 6 5.6057 1.4526 0.6986 24 8 4.3227 1.4484 1.0939 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 1.8934 -0.5140 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 5.7387 1.4389 -3.2654 33 1 8.4000 2.3376 -3.5622 34 1 8.4061 0.5577 -3.5557 35 1 5.6439 0.1834 -4.8358 36 1 6.1976 0.1784 -6.5277 37 1 7.1200 -0.7030 -5.2869 38 1 7.1043 3.5753 -5.3040 39 1 6.1883 2.6773 -6.5376 40 1 5.6347 2.6818 -4.8457 41 1 9.1761 2.3319 -5.9371 42 1 9.1833 0.5521 -5.9301 43 1 9.3465 1.4226 -10.5478 44 1 6.4755 1.4574 1.3386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345732494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:21 Heat of formation + Delta-G solvation = -67.383079 kcal Electronic energy + Delta-G solvation = -23392.499067 eV Core-core repulsion = 19923.683767 eV Total energy + Delta-G solvation = -3468.815300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.49625 -40.83219 -38.73116 -36.42489 -35.73975 -35.18222 -33.95909 -31.70426 -29.78738 -28.30974 -28.03011 -27.75675 -25.32723 -23.93308 -23.18105 -22.04831 -21.47483 -20.04242 -19.00572 -18.85429 -17.85867 -17.52791 -16.98628 -16.39056 -16.20125 -16.01626 -15.71886 -15.39411 -15.21626 -14.98368 -14.57054 -14.22723 -14.18859 -14.16729 -13.93298 -13.01867 -12.96002 -12.85790 -12.74428 -12.66066 -12.42605 -12.32236 -12.19207 -12.07902 -11.92243 -11.79043 -11.61442 -11.55610 -11.48835 -11.13841 -10.93101 -10.70354 -10.26890 -9.96753 -8.22106 -6.22524 0.03869 0.91379 1.36641 1.39078 1.49412 1.54315 2.06203 2.18479 2.39544 2.81531 3.13228 3.66388 3.74880 3.88535 4.01909 4.04687 4.10032 4.12948 4.29389 4.50887 4.58810 4.60553 4.67017 4.71153 4.72983 4.78974 4.91123 4.93620 4.97347 5.02424 5.06206 5.26175 5.26330 5.28803 5.29969 5.38467 5.40030 5.46724 5.52586 5.65127 5.74875 6.27566 6.38263 6.56855 6.84155 7.03803 7.40110 8.93609 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.003005 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.708789 B = 9316.603505 C =10212.066757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.023 4.023 4 C 0.205 3.795 5 N -0.483 5.483 6 C -0.100 4.100 7 C 0.596 3.404 8 O -0.573 6.573 9 N -0.696 5.696 10 C 0.136 3.864 11 C -0.058 4.058 12 C -0.124 4.124 13 C -0.123 4.123 14 C -0.002 4.002 15 C -0.502 4.502 16 H 0.051 0.949 17 C 0.005 3.995 18 N -0.952 5.952 19 Si 0.936 3.064 20 H -0.271 1.271 21 H -0.289 1.289 22 H -0.250 1.250 23 C 0.029 3.971 24 O -0.193 6.193 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.414 0.586 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.263 0.737 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.343 -0.616 25.225 29.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.061 4.061 4 C -0.005 4.005 5 N -0.213 5.213 6 C -0.219 4.219 7 C 0.382 3.618 8 O -0.453 6.453 9 N -0.347 5.347 10 C 0.012 3.988 11 C -0.058 4.058 12 C -0.181 4.181 13 C -0.181 4.181 14 C -0.040 4.040 15 C -0.541 4.541 16 H 0.069 0.931 17 C -0.191 4.191 18 N -0.594 5.594 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.215 1.215 22 H -0.174 1.174 23 C -0.045 4.045 24 O -0.079 6.079 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.252 0.748 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -14.722 -0.608 24.745 28.800 hybrid contribution 1.136 -0.055 -0.269 1.169 sum -13.585 -0.663 24.476 28.001 Atomic orbital electron populations 1.21737 0.93267 1.02646 1.02963 1.21513 0.97595 0.94126 1.02543 1.20505 0.78147 1.00270 1.07144 1.27087 0.97519 0.98228 0.77675 1.70741 1.00623 1.18790 1.31171 1.21660 0.91861 1.14552 0.93788 1.17040 0.86480 0.76060 0.82197 1.90792 1.25610 1.52975 1.75943 1.45865 1.11230 1.72579 1.05039 1.21433 0.87035 1.01678 0.88617 1.20556 0.96849 0.96691 0.91702 1.21696 0.98807 0.96267 1.01313 1.21694 0.98754 0.96313 1.01306 1.19562 0.94217 0.96406 0.93849 1.21354 0.94061 1.48373 0.90265 0.93109 1.25843 1.03430 0.95012 0.94831 1.70046 1.35584 1.53642 1.00079 0.85873 0.80558 0.78879 0.78638 1.19674 1.21479 1.17382 1.25755 0.85572 0.98090 0.95127 1.84430 1.16487 1.69073 1.37874 0.91955 0.92133 0.91170 0.92470 0.91433 0.86142 0.86563 0.74822 0.91881 0.91850 0.92136 0.93362 0.93396 0.93413 0.93360 0.92114 0.96385 0.96551 0.92847 0.72792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.24 16 2 C -0.12 -1.13 5.92 30.59 0.18 -0.95 16 3 C -0.02 -0.22 5.84 29.85 0.17 -0.04 16 4 C 0.20 3.62 7.56 88.39 0.67 4.29 16 5 N -0.48 -11.39 11.06 -293.03 -3.24 -14.63 16 6 C -0.10 -2.53 6.99 40.41 0.28 -2.24 16 7 C 0.60 18.28 7.81 86.66 0.68 18.96 16 8 O -0.57 -20.41 16.89 -4.08 -0.07 -20.48 16 9 N -0.70 -20.93 4.96 -466.37 -2.31 -23.24 16 10 C 0.14 4.57 4.56 86.38 0.39 4.96 16 11 C -0.06 -2.14 0.54 -52.18 -0.03 -2.17 16 12 C -0.12 -4.40 8.05 71.98 0.58 -3.82 16 13 C -0.12 -4.40 8.05 71.98 0.58 -3.82 16 14 C 0.00 -0.11 3.11 29.85 0.09 -0.02 16 15 C -0.50 -27.62 8.20 25.60 0.21 -27.41 16 16 H 0.05 3.02 5.92 -2.91 -0.02 3.00 16 17 C 0.00 0.29 5.47 84.65 0.46 0.75 16 18 N -0.95 -59.19 13.96 21.44 0.30 -58.89 16 19 Si 0.94 44.63 27.47 68.60 1.88 46.51 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 23 C 0.03 0.55 11.95 67.32 0.80 1.35 16 24 O -0.19 -3.35 10.73 0.42 0.00 -3.34 16 25 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.41 11.56 5.89 -92.70 -0.55 11.01 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 1.80 6.86 -2.39 -0.02 1.79 16 36 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 40 H 0.06 1.81 6.86 -2.39 -0.02 1.79 16 41 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 42 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.26 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -70.25 359.24 2.75 -67.49 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.39 Total: 16.98 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.79 Total: -10.41 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -5.25 Total: -96.76 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.06 Total: -23.82 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -70.25 2.75 -67.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345732494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.110 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds