Wall clock time and date at job start Tue Mar 31 2020 06:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.41265 * 126.70356 * 84.70766 * 4 2 1 6 6 C 1.36823 * 103.84676 * 179.85993 * 5 4 2 7 7 C 1.47516 * 126.94534 * 180.13082 * 6 5 4 8 8 O 1.21580 * 119.99780 * 0.29955 * 7 6 5 9 9 N 1.34768 * 119.99922 * 180.30294 * 7 6 5 10 10 C 1.46505 * 120.00033 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47336 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46963 * 299.99887 * 11 10 9 13 13 C 1.53002 * 109.47081 * 59.99696 * 11 10 9 14 14 C 1.52998 * 109.46928 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.46740 * 179.97438 * 14 11 10 16 16 H 1.08005 * 120.00133 * 0.02562 * 15 14 11 17 17 C 1.37873 * 120.00050 * 179.97438 * 15 14 11 18 18 N 1.31522 * 119.99912 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00452 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46898 * 60.00317 * 19 17 15 21 21 H 1.48498 * 109.47532 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47229 * 300.00391 * 19 17 15 23 23 O 1.34639 * 106.11193 * 0.39892 * 6 5 4 24 24 N 1.20890 * 111.47082 * 359.72999 * 23 6 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08000 * 128.07952 * 0.02562 * 5 4 2 33 33 H 0.97007 * 120.00338 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46993 * 299.99850 * 10 9 7 35 35 H 1.08997 * 109.47056 * 59.99732 * 10 9 7 36 36 H 1.09004 * 109.46800 * 59.99951 * 12 11 10 37 37 H 1.08993 * 109.46835 * 179.97438 * 12 11 10 38 38 H 1.09006 * 109.46896 * 300.00325 * 12 11 10 39 39 H 1.08995 * 109.47231 * 60.00045 * 13 11 10 40 40 H 1.09000 * 109.46790 * 180.02562 * 13 11 10 41 41 H 1.09004 * 109.47070 * 299.99805 * 13 11 10 42 42 H 1.08995 * 109.47064 * 299.99758 * 14 11 10 43 43 H 1.08997 * 109.47150 * 59.99861 * 14 11 10 44 44 H 0.96993 * 120.00118 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.2154 -0.1493 -2.5138 6 6 2.6850 -1.1930 -3.2636 7 6 3.0494 -1.1646 -4.6928 8 8 2.9481 -0.1314 -5.3255 9 7 3.4944 -2.2840 -5.2970 10 6 3.8569 -2.2558 -6.7162 11 6 4.3265 -3.6457 -7.1505 12 6 5.5454 -4.0545 -6.3209 13 6 3.1987 -4.6564 -6.9321 14 6 4.7043 -3.6163 -8.6328 15 6 5.1675 -4.9851 -9.0604 16 1 5.1896 -5.7952 -8.3463 17 6 5.5619 -5.2037 -10.3633 18 7 5.5344 -4.2174 -11.2329 19 14 6.1353 -6.9006 -10.8935 20 1 5.0411 -7.8817 -10.6806 21 1 6.5022 -6.8720 -12.3322 22 1 7.3190 -7.2969 -10.0891 23 8 2.7416 -2.2526 -2.4349 24 7 2.3770 -1.9621 -1.3196 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.0306 0.8671 -2.8289 33 1 3.5755 -3.1084 -4.7921 34 1 2.9884 -1.9650 -7.3073 35 1 4.6599 -1.5354 -6.8719 36 1 5.2757 -4.0755 -5.2650 37 1 5.8796 -5.0448 -6.6300 38 1 6.3488 -3.3344 -6.4765 39 1 2.3304 -4.3652 -7.5231 40 1 3.5335 -5.6466 -7.2411 41 1 2.9292 -4.6775 -5.8762 42 1 3.8357 -3.3253 -9.2234 43 1 5.5076 -2.8962 -8.7888 44 1 5.8122 -4.3710 -12.1494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345898739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:32 Heat of formation + Delta-G solvation = -5.445118 kcal Electronic energy + Delta-G solvation = -23463.872728 eV Core-core repulsion = 19997.743260 eV Total energy + Delta-G solvation = -3466.129468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.20171 -39.71173 -37.24499 -36.90928 -33.84237 -32.72258 -32.33572 -31.73738 -27.65286 -27.24204 -26.58621 -26.53967 -24.36599 -24.02078 -22.59627 -21.70840 -19.98683 -18.81279 -17.93237 -17.75763 -16.45197 -16.29333 -15.83207 -15.17555 -14.98384 -14.70675 -14.53387 -14.08014 -13.75600 -13.65908 -13.56239 -13.17787 -12.80871 -12.61620 -12.24543 -12.07755 -12.05755 -11.93632 -11.73672 -11.23787 -11.21216 -11.02135 -10.89080 -10.65452 -10.47348 -10.37349 -10.36413 -10.28892 -9.92219 -9.90451 -9.24050 -8.97230 -8.95137 -8.37223 -6.01544 -4.02957 0.66809 1.82070 2.51148 2.96978 3.23305 3.31564 3.37029 3.38588 3.66817 4.21134 4.44101 4.60252 4.68320 4.70603 4.84644 4.98781 5.16858 5.20949 5.33887 5.38510 5.40244 5.43862 5.53988 5.55252 5.69624 5.70842 5.79537 5.81544 6.12695 6.14517 6.18646 6.33388 6.36314 6.60653 6.66542 7.01772 7.04376 7.07531 7.39032 7.60899 7.72619 7.87364 7.96558 8.04082 8.38324 9.01418 9.60301 11.09836 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042312 B = 0.002637 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.586449 B =10617.007015 C =10933.538765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.017 3.983 5 C -0.153 4.153 6 C -0.075 4.075 7 C 0.596 3.404 8 O -0.517 6.517 9 N -0.702 5.702 10 C 0.125 3.875 11 C -0.073 4.073 12 C -0.129 4.129 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.512 4.512 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 O 0.116 5.884 24 N -0.346 5.346 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.181 0.819 33 H 0.406 0.594 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 8.075 21.321 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.176 4.176 6 C -0.141 4.141 7 C 0.379 3.621 8 O -0.393 6.393 9 N -0.353 5.353 10 C 0.003 3.997 11 C -0.073 4.073 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.001 4.001 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 O 0.043 5.957 24 N -0.047 5.047 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.199 0.801 33 H 0.242 0.758 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.829 7.833 21.506 24.190 hybrid contribution 0.315 -0.617 -0.580 0.904 sum -7.514 7.216 20.926 23.376 Atomic orbital electron populations 1.21841 0.93205 1.02540 1.02667 1.19549 0.96268 0.95512 0.92272 1.21865 1.01618 0.94158 1.02801 1.23618 1.02612 0.90467 0.97378 1.22777 1.01937 1.01464 0.91404 1.24443 1.06781 0.88270 0.94591 1.16575 0.78555 0.84778 0.82232 1.90874 1.54297 1.31128 1.63003 1.46173 1.64223 1.11603 1.13279 1.21821 1.00457 0.99559 0.77837 1.20931 0.95061 0.91078 1.00229 1.21789 0.97513 1.02872 0.96503 1.21789 0.97834 1.00708 0.98346 1.19092 0.96812 0.97587 0.86622 1.21133 1.43414 0.95555 0.94920 0.92268 1.25010 0.95945 0.96617 0.96905 1.69951 1.48110 1.31300 1.04025 0.86702 0.79171 0.84833 0.77539 1.20317 1.21414 1.20321 1.84985 1.62272 1.34385 1.14028 1.73728 1.14424 1.17011 0.99539 0.92298 0.91988 0.91408 0.89232 0.91404 0.92106 0.91816 0.80129 0.75761 0.91092 0.91089 0.95121 0.91244 0.93236 0.93239 0.91245 0.95123 0.96240 0.96243 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.18 37.16 0.34 -0.59 16 2 C -0.02 -0.13 3.38 -91.77 -0.31 -0.44 16 3 C -0.15 -0.87 8.81 37.16 0.33 -0.54 16 4 C 0.02 0.18 6.20 -82.16 -0.51 -0.33 16 5 C -0.15 -1.69 10.13 -38.94 -0.39 -2.08 16 6 C -0.07 -0.94 7.29 -36.31 -0.26 -1.21 16 7 C 0.60 8.73 7.82 -12.48 -0.10 8.63 16 8 O -0.52 -9.06 16.91 5.30 0.09 -8.97 16 9 N -0.70 -9.93 4.96 -61.35 -0.30 -10.23 16 10 C 0.13 2.09 4.56 -4.04 -0.02 2.07 16 11 C -0.07 -1.32 0.54 -154.50 -0.08 -1.41 16 12 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 13 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 14 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 15 C -0.51 -13.32 7.65 -34.44 -0.26 -13.59 16 16 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 19 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 O 0.12 1.45 11.04 15.56 0.17 1.62 16 24 N -0.35 -4.30 12.04 33.52 0.40 -3.90 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 7.49 -51.93 -0.39 -0.03 16 32 H 0.18 1.68 7.66 -52.49 -0.40 1.28 16 33 H 0.41 5.06 5.99 -40.82 -0.24 4.82 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 41 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -29.92 360.05 -6.32 -36.24 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.94 Total: 0.25 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.89 Total: -11.09 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.84 Total: -39.45 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.26 Total: -7.35 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.92 -6.32 -36.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345898739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.795 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds