Wall clock time and date at job start Tue Mar 31 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.41265 * 126.70356 * 84.70766 * 4 2 1 6 6 C 1.36823 * 103.84676 * 179.85993 * 5 4 2 7 7 C 1.47516 * 126.94534 * 180.13082 * 6 5 4 8 8 O 1.21580 * 119.99780 * 0.29955 * 7 6 5 9 9 N 1.34768 * 119.99922 * 180.30294 * 7 6 5 10 10 C 1.46505 * 120.00033 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47336 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46963 * 299.99887 * 11 10 9 13 13 C 1.53002 * 109.47081 * 59.99696 * 11 10 9 14 14 C 1.52998 * 109.46928 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.46740 * 179.97438 * 14 11 10 16 16 H 1.08005 * 120.00133 * 0.02562 * 15 14 11 17 17 C 1.37873 * 120.00050 * 179.97438 * 15 14 11 18 18 N 1.31522 * 119.99912 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00452 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46898 * 60.00317 * 19 17 15 21 21 H 1.48498 * 109.47532 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47229 * 300.00391 * 19 17 15 23 23 O 1.34639 * 106.11193 * 0.39892 * 6 5 4 24 24 N 1.20890 * 111.47082 * 359.72999 * 23 6 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08000 * 128.07952 * 0.02562 * 5 4 2 33 33 H 0.97007 * 120.00338 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46993 * 299.99850 * 10 9 7 35 35 H 1.08997 * 109.47056 * 59.99732 * 10 9 7 36 36 H 1.09004 * 109.46800 * 59.99951 * 12 11 10 37 37 H 1.08993 * 109.46835 * 179.97438 * 12 11 10 38 38 H 1.09006 * 109.46896 * 300.00325 * 12 11 10 39 39 H 1.08995 * 109.47231 * 60.00045 * 13 11 10 40 40 H 1.09000 * 109.46790 * 180.02562 * 13 11 10 41 41 H 1.09004 * 109.47070 * 299.99805 * 13 11 10 42 42 H 1.08995 * 109.47064 * 299.99758 * 14 11 10 43 43 H 1.08997 * 109.47150 * 59.99861 * 14 11 10 44 44 H 0.96993 * 120.00118 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.2154 -0.1493 -2.5138 6 6 2.6850 -1.1930 -3.2636 7 6 3.0494 -1.1646 -4.6928 8 8 2.9481 -0.1314 -5.3255 9 7 3.4944 -2.2840 -5.2970 10 6 3.8569 -2.2558 -6.7162 11 6 4.3265 -3.6457 -7.1505 12 6 5.5454 -4.0545 -6.3209 13 6 3.1987 -4.6564 -6.9321 14 6 4.7043 -3.6163 -8.6328 15 6 5.1675 -4.9851 -9.0604 16 1 5.1896 -5.7952 -8.3463 17 6 5.5619 -5.2037 -10.3633 18 7 5.5344 -4.2174 -11.2329 19 14 6.1353 -6.9006 -10.8935 20 1 5.0411 -7.8817 -10.6806 21 1 6.5022 -6.8720 -12.3322 22 1 7.3190 -7.2969 -10.0891 23 8 2.7416 -2.2526 -2.4349 24 7 2.3770 -1.9621 -1.3196 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.0306 0.8671 -2.8289 33 1 3.5755 -3.1084 -4.7921 34 1 2.9884 -1.9650 -7.3073 35 1 4.6599 -1.5354 -6.8719 36 1 5.2757 -4.0755 -5.2650 37 1 5.8796 -5.0448 -6.6300 38 1 6.3488 -3.3344 -6.4765 39 1 2.3304 -4.3652 -7.5231 40 1 3.5335 -5.6466 -7.2411 41 1 2.9292 -4.6775 -5.8762 42 1 3.8357 -3.3253 -9.2234 43 1 5.5076 -2.8962 -8.7888 44 1 5.8122 -4.3710 -12.1494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345898739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:31 Heat of formation + Delta-G solvation = -22.912300 kcal Electronic energy + Delta-G solvation = -23464.630162 eV Core-core repulsion = 19997.743260 eV Total energy + Delta-G solvation = -3466.886902 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.10823 -40.97689 -38.72276 -37.59222 -35.37400 -34.07661 -33.53414 -32.80102 -29.14701 -28.15937 -27.95339 -27.89251 -25.50519 -25.14099 -24.08668 -22.62589 -21.05956 -19.98630 -19.04093 -18.85547 -18.34062 -17.32705 -17.13325 -16.45469 -16.44318 -15.88259 -15.31899 -15.14530 -15.06695 -14.76361 -14.66716 -14.33203 -14.17211 -13.91971 -13.80597 -13.06108 -12.87271 -12.84406 -12.73795 -12.59156 -12.51079 -12.30811 -12.26254 -12.22011 -12.00426 -11.82032 -11.63085 -11.53270 -11.16311 -10.97411 -10.88836 -10.85874 -10.48275 -10.22207 -8.12104 -6.19183 -0.32676 0.97055 1.43841 1.45595 1.46637 1.52835 1.84218 2.13599 2.46254 2.91857 3.22545 3.36715 3.81269 3.89859 3.96183 4.08203 4.08566 4.13658 4.22410 4.24979 4.48469 4.68325 4.72035 4.76283 4.78604 4.83976 4.92113 4.95136 4.96943 5.03749 5.13650 5.14214 5.26848 5.31317 5.35708 5.44672 5.52766 5.54414 5.58394 5.81629 5.92077 6.21920 6.34261 6.84434 6.95545 6.99477 7.48240 9.00000 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.042312 B = 0.002637 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.586449 B =10617.007015 C =10933.538765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.018 4.018 3 C -0.145 4.145 4 C 0.024 3.976 5 C -0.143 4.143 6 C -0.088 4.088 7 C 0.603 3.397 8 O -0.549 6.549 9 N -0.692 5.692 10 C 0.138 3.862 11 C -0.064 4.064 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.040 3.960 15 C -0.513 4.513 16 H 0.071 0.929 17 C -0.004 4.004 18 N -0.937 5.937 19 Si 0.956 3.044 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.268 1.268 23 O 0.110 5.890 24 N -0.363 5.363 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.197 0.803 33 H 0.417 0.583 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.066 0.934 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 7.638 23.935 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.203 4.203 4 C -0.134 4.134 5 C -0.165 4.165 6 C -0.154 4.154 7 C 0.387 3.613 8 O -0.427 6.427 9 N -0.344 5.344 10 C 0.015 3.985 11 C -0.065 4.065 12 C -0.182 4.182 13 C -0.182 4.182 14 C 0.002 3.998 15 C -0.551 4.551 16 H 0.089 0.911 17 C -0.201 4.201 18 N -0.578 5.578 19 Si 0.781 3.219 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.193 1.193 23 O 0.039 5.961 24 N -0.065 5.065 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.214 0.786 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.404 7.363 24.148 26.608 hybrid contribution 0.455 -0.415 -1.314 1.451 sum -7.949 6.948 22.834 25.157 Atomic orbital electron populations 1.21840 0.92268 1.02169 1.03738 1.19745 0.96954 0.96149 0.90903 1.21877 1.01279 0.93145 1.03955 1.24129 1.01261 0.89839 0.98192 1.23078 1.00329 1.01792 0.91306 1.24066 1.08377 0.89175 0.93741 1.16670 0.77651 0.84096 0.82878 1.90860 1.55605 1.32199 1.64075 1.45937 1.64105 1.12212 1.12119 1.21445 0.99646 0.98141 0.79282 1.20718 0.96428 0.92599 0.96733 1.21732 0.96482 1.01692 0.98342 1.21731 0.96758 0.99193 1.00563 1.18970 0.94522 0.95977 0.90315 1.21558 1.41969 0.96585 0.95029 0.91083 1.25907 0.96484 1.00391 0.97313 1.70103 1.49834 1.33587 1.04299 0.85637 0.79085 0.80307 0.76827 1.19272 1.21763 1.19279 1.84973 1.62788 1.34286 1.14042 1.73722 1.15233 1.18076 0.99473 0.93374 0.92005 0.89309 0.88880 0.89483 0.92654 0.91515 0.78571 0.74486 0.92149 0.92140 0.91492 0.92519 0.94010 0.94017 0.92521 0.91496 0.99141 0.99146 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 2 C -0.02 -0.23 3.38 -11.54 -0.04 -0.27 16 3 C -0.14 -1.32 8.81 71.98 0.63 -0.69 16 4 C 0.02 0.45 6.20 43.55 0.27 0.72 16 5 C -0.14 -2.88 10.13 22.68 0.23 -2.65 16 6 C -0.09 -2.09 7.29 24.39 0.18 -1.91 16 7 C 0.60 17.09 7.82 86.69 0.68 17.76 16 8 O -0.55 -19.07 16.91 -3.97 -0.07 -19.14 16 9 N -0.69 -18.71 4.96 -466.29 -2.31 -21.02 16 10 C 0.14 4.61 4.56 86.38 0.39 5.00 16 11 C -0.06 -2.34 0.54 -52.18 -0.03 -2.36 16 12 C -0.13 -4.11 8.05 71.98 0.58 -3.53 16 13 C -0.13 -4.11 8.05 71.98 0.58 -3.53 16 14 C 0.04 1.96 4.04 29.85 0.12 2.08 16 15 C -0.51 -27.01 7.65 25.60 0.20 -26.81 16 16 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16 17 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 18 N -0.94 -56.20 13.29 21.45 0.28 -55.92 16 19 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 O 0.11 2.58 11.04 65.85 0.73 3.30 16 24 N -0.36 -8.41 12.04 -48.86 -0.59 -8.99 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.58 7.49 -2.39 -0.02 0.56 16 32 H 0.20 3.24 7.66 -2.91 -0.02 3.22 16 33 H 0.42 9.41 5.99 -92.70 -0.56 8.85 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 37 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 38 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 2.01 6.62 -2.39 -0.02 1.99 16 41 H 0.07 1.70 6.86 -2.38 -0.02 1.68 16 42 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -65.66 360.05 5.43 -60.23 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.44 Total: 13.04 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.91 Total: -16.77 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.61 Total: -85.94 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.66 Total: -15.83 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -65.66 5.43 -60.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345898739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.318 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds