Wall clock time and date at job start Tue Mar 31 2020 07:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47551 * 2 1 4 4 C 1.53005 * 109.47047 * 239.99624 * 2 1 3 5 5 N 1.46498 * 109.47309 * 120.00131 * 2 1 3 6 6 C 1.46766 * 124.34995 * 59.99407 * 5 2 1 7 7 C 1.54475 * 105.47448 * 162.96471 * 6 5 2 8 8 H 1.09005 * 110.97010 * 143.56957 * 7 6 5 9 9 C 1.50696 * 110.97182 * 267.29951 * 7 6 5 10 10 O 1.21297 * 120.00059 * 359.97438 * 9 7 6 11 11 N 1.34780 * 120.00315 * 180.27711 * 9 7 6 12 12 C 1.37091 * 120.00447 * 179.72577 * 11 9 7 13 13 H 1.07997 * 120.00215 * 140.98200 * 12 11 9 14 14 C 1.38947 * 119.99558 * 320.98765 * 12 11 9 15 15 N 1.31420 * 120.00249 * 157.97020 * 14 12 11 16 16 Si 1.86800 * 120.00496 * 337.96497 * 14 12 11 17 17 H 1.48496 * 109.47039 * 93.54555 * 16 14 12 18 18 H 1.48496 * 109.47693 * 213.55165 * 16 14 12 19 19 H 1.48499 * 109.46675 * 333.55188 * 16 14 12 20 20 C 1.46503 * 119.99622 * 359.71797 * 11 9 7 21 21 C 1.53000 * 117.49764 * 183.08837 * 20 11 9 22 22 C 1.53003 * 117.49695 * 114.43078 * 20 11 9 23 23 C 1.54636 * 101.76617 * 25.41757 * 7 6 5 24 24 C 1.34418 * 124.35255 * 239.97420 * 5 2 1 25 25 O 1.21281 * 124.93992 * 0.46350 * 24 5 2 26 26 H 1.08998 * 109.46474 * 300.00458 * 1 2 3 27 27 H 1.09004 * 109.46842 * 59.99695 * 1 2 3 28 28 H 1.08998 * 109.47349 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46924 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46815 * 300.00005 * 3 2 1 31 31 H 1.09000 * 109.46978 * 59.99827 * 3 2 1 32 32 H 1.08999 * 109.47475 * 300.00510 * 4 2 1 33 33 H 1.09004 * 109.46743 * 60.00621 * 4 2 1 34 34 H 1.08993 * 109.47174 * 179.97438 * 4 2 1 35 35 H 1.09006 * 110.24460 * 43.96615 * 6 5 2 36 36 H 1.08997 * 110.32067 * 282.00583 * 6 5 2 37 37 H 0.96990 * 120.00186 * 179.97438 * 15 14 12 38 38 H 1.09000 * 115.55554 * 328.76268 * 20 11 9 39 39 H 1.09002 * 117.49790 * 0.02562 * 21 20 11 40 40 H 1.09005 * 117.49546 * 145.02322 * 21 20 11 41 41 H 1.08995 * 117.50434 * 214.97997 * 22 20 11 42 42 H 1.09002 * 117.49391 * 359.97438 * 22 20 11 43 43 H 1.09002 * 110.48428 * 93.87932 * 23 7 6 44 44 H 1.08993 * 110.48756 * 216.52211 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 1.7232 -2.0907 1.5225 7 6 2.7668 -2.4946 2.5874 8 1 2.3302 -3.1667 3.3262 9 6 3.9793 -3.1178 1.9452 10 8 4.0310 -3.2414 0.7397 11 7 5.0037 -3.5434 2.7108 12 6 6.1043 -4.1154 2.1270 13 1 7.0913 -3.9005 2.5090 14 6 5.9498 -4.9717 1.0436 15 7 6.9534 -5.1778 0.2206 16 14 4.3157 -5.8300 0.7569 17 1 3.4898 -5.0231 -0.1768 18 1 4.5578 -7.1724 0.1699 19 1 3.6002 -5.9769 2.0499 20 6 4.9410 -3.3944 4.1669 21 6 6.1649 -3.8304 4.9749 22 6 4.8871 -4.6727 5.0060 23 6 3.1168 -1.1277 3.2202 24 6 2.7948 -0.1236 2.1355 25 8 3.1804 1.0261 2.1167 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2493 33 1 1.6767 -0.2075 -2.1392 34 1 3.1299 -0.7210 -1.2495 35 1 1.8285 -2.7152 0.6353 36 1 0.7157 -2.1804 1.9287 37 1 6.8457 -5.7758 -0.5354 38 1 4.3811 -2.5316 4.5276 39 1 7.0169 -4.2276 4.4230 40 1 6.4099 -3.2546 5.8674 41 1 4.2921 -4.6507 5.9190 42 1 4.8979 -5.6243 4.4746 43 1 2.5021 -0.9470 4.1021 44 1 4.1752 -1.0859 3.4768 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346540278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:01 Heat of formation + Delta-G solvation = -17.454833 kcal Electronic energy + Delta-G solvation = -25874.318463 eV Core-core repulsion = 22407.668214 eV Total energy + Delta-G solvation = -3466.650248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80613 -38.96262 -36.66640 -36.37984 -35.21076 -32.93558 -31.60375 -30.21669 -27.72576 -27.24849 -26.89362 -25.36656 -22.84038 -21.87948 -21.55913 -20.81492 -19.25944 -18.36944 -17.50856 -16.42803 -16.29893 -15.51143 -15.30930 -14.90642 -14.36502 -14.17329 -13.85255 -13.72260 -13.65800 -13.39262 -13.16047 -12.84851 -12.64584 -12.43517 -12.07137 -12.00342 -11.89605 -11.66783 -11.51531 -11.30011 -11.18586 -11.15408 -10.93890 -10.84531 -10.72121 -10.40518 -10.06284 -10.03511 -9.69246 -9.14021 -8.56039 -8.54026 -8.41522 -7.55840 -6.23984 -3.97105 2.87007 3.17973 3.22118 3.41185 3.60002 3.67157 4.17727 4.42453 4.52359 4.58607 4.71168 4.95035 4.98302 5.00426 5.11420 5.16667 5.30743 5.39835 5.52940 5.55076 5.59984 5.64603 5.66658 5.71597 5.75588 5.83641 5.84473 5.90571 6.02922 6.09179 6.10308 6.11687 6.17858 6.25170 6.46721 6.52391 6.61311 6.80070 6.89667 7.42217 7.78783 7.89954 8.48175 8.71636 8.84397 9.38172 9.74177 10.80614 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.006624 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.593427 B = 4226.346591 C = 5024.337715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.174 3.826 3 C -0.138 4.138 4 C -0.156 4.156 5 N -0.600 5.600 6 C 0.116 3.884 7 C -0.119 4.119 8 H 0.109 0.891 9 C 0.451 3.549 10 O -0.533 6.533 11 N -0.428 5.428 12 C -0.352 4.352 13 H 0.097 0.903 14 C 0.093 3.907 15 N -0.861 5.861 16 Si 0.911 3.089 17 H -0.250 1.250 18 H -0.311 1.311 19 H -0.281 1.281 20 C 0.055 3.945 21 C -0.172 4.172 22 C -0.198 4.198 23 C -0.149 4.149 24 C 0.524 3.476 25 O -0.537 6.537 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.272 0.728 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 5.827 5.517 15.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.214 4.214 5 N -0.334 5.334 6 C -0.007 4.007 7 C -0.142 4.142 8 H 0.127 0.873 9 C 0.241 3.759 10 O -0.415 6.415 11 N -0.147 5.147 12 C -0.477 4.477 13 H 0.114 0.886 14 C -0.116 4.116 15 N -0.495 5.495 16 Si 0.742 3.258 17 H -0.176 1.176 18 H -0.241 1.241 19 H -0.207 1.207 20 C -0.051 4.051 21 C -0.210 4.210 22 C -0.237 4.237 23 C -0.189 4.189 24 C 0.312 3.688 25 O -0.415 6.415 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.598 6.336 4.647 14.848 hybrid contribution -0.657 -0.800 -0.028 1.035 sum -13.255 5.536 4.619 15.089 Atomic orbital electron populations 1.22169 0.94653 1.02209 1.02179 1.20425 0.93343 0.92911 0.84252 1.22074 1.02798 0.93244 1.01421 1.22149 1.02740 1.00584 0.95894 1.48274 1.50587 1.12444 1.22069 1.21934 0.96666 0.82409 0.99709 1.22255 0.96514 0.96957 0.98443 0.87275 1.19747 0.85567 0.83002 0.87584 1.90552 1.79478 1.57672 1.13803 1.43066 1.16981 1.52636 1.02065 1.18757 0.85789 1.27899 1.15278 0.88559 1.25275 0.97822 0.94546 0.93985 1.69772 1.33359 1.34088 1.12296 0.86430 0.84501 0.75738 0.79099 1.17589 1.24083 1.20672 1.22034 1.03058 0.97348 0.82641 1.23140 0.93548 1.03395 1.00918 1.23282 1.01556 0.97341 1.01508 1.22481 1.05121 0.93131 0.98157 1.20718 0.77114 0.87639 0.83281 1.90682 1.54859 1.17948 1.77992 0.92414 0.91510 0.92275 0.91170 0.92788 0.91513 0.92027 0.91954 0.91505 0.88646 0.91219 0.91793 0.86657 0.87115 0.89359 0.89449 0.88574 0.87602 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.54 37.16 0.32 -1.37 16 2 C 0.17 2.47 1.20 -131.82 -0.16 2.31 16 3 C -0.14 -2.00 7.00 37.16 0.26 -1.74 16 4 C -0.16 -2.29 8.49 37.16 0.32 -1.98 16 5 N -0.60 -9.51 2.76 -157.57 -0.43 -9.95 16 6 C 0.12 1.75 5.93 -3.12 -0.02 1.73 16 7 C -0.12 -1.93 2.66 -90.14 -0.24 -2.17 16 8 H 0.11 1.47 8.04 -51.93 -0.42 1.05 16 9 C 0.45 10.04 5.26 -10.99 -0.06 9.98 16 10 O -0.53 -13.89 10.59 5.54 0.06 -13.83 16 11 N -0.43 -9.76 2.55 -107.73 -0.27 -10.03 16 12 C -0.35 -9.56 8.78 -14.94 -0.13 -9.69 16 13 H 0.10 2.75 6.89 -52.49 -0.36 2.39 16 14 C 0.09 2.68 4.79 -17.47 -0.08 2.60 16 15 N -0.86 -25.95 13.96 55.50 0.77 -25.17 16 16 Si 0.91 23.42 24.83 -169.99 -4.22 19.20 16 17 H -0.25 -6.61 6.11 56.52 0.35 -6.27 16 18 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.05 0.97 5.37 -67.93 -0.37 0.60 16 21 C -0.17 -2.83 9.80 -26.69 -0.26 -3.10 16 22 C -0.20 -3.16 10.36 -26.69 -0.28 -3.44 16 23 C -0.15 -2.20 5.16 -26.74 -0.14 -2.34 16 24 C 0.52 9.10 7.84 -10.86 -0.09 9.02 16 25 O -0.54 -10.59 13.99 5.56 0.08 -10.52 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 29 H 0.07 1.21 7.08 -51.93 -0.37 0.84 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.01 7.06 -51.93 -0.37 0.64 16 32 H 0.06 0.93 7.21 -51.93 -0.37 0.55 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.65 6.00 -51.93 -0.31 1.34 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.12 1.67 5.17 -51.93 -0.27 1.40 16 39 H 0.11 2.11 6.46 -51.93 -0.34 1.78 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 43 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.11 1.75 6.29 -51.93 -0.33 1.43 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -33.61 338.00 -6.81 -40.41 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.96 Total: 4.38 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.92 Total: 0.41 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.07 Total: -45.16 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.14 Total: -24.34 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.22 Total: 19.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.61 -6.81 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346540278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.960 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds