Wall clock time and date at job start Tue Mar 31 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47551 * 2 1 4 4 C 1.53005 * 109.47047 * 239.99624 * 2 1 3 5 5 N 1.46498 * 109.47309 * 120.00131 * 2 1 3 6 6 C 1.46766 * 124.34995 * 59.99407 * 5 2 1 7 7 C 1.54475 * 105.47448 * 162.96471 * 6 5 2 8 8 H 1.09005 * 110.97010 * 143.56957 * 7 6 5 9 9 C 1.50696 * 110.97182 * 267.29951 * 7 6 5 10 10 O 1.21297 * 120.00059 * 359.97438 * 9 7 6 11 11 N 1.34780 * 120.00315 * 180.27711 * 9 7 6 12 12 C 1.37091 * 120.00447 * 179.72577 * 11 9 7 13 13 H 1.07997 * 120.00215 * 140.98200 * 12 11 9 14 14 C 1.38947 * 119.99558 * 320.98765 * 12 11 9 15 15 N 1.31420 * 120.00249 * 157.97020 * 14 12 11 16 16 Si 1.86800 * 120.00496 * 337.96497 * 14 12 11 17 17 H 1.48496 * 109.47039 * 93.54555 * 16 14 12 18 18 H 1.48496 * 109.47693 * 213.55165 * 16 14 12 19 19 H 1.48499 * 109.46675 * 333.55188 * 16 14 12 20 20 C 1.46503 * 119.99622 * 359.71797 * 11 9 7 21 21 C 1.53000 * 117.49764 * 183.08837 * 20 11 9 22 22 C 1.53003 * 117.49695 * 114.43078 * 20 11 9 23 23 C 1.54636 * 101.76617 * 25.41757 * 7 6 5 24 24 C 1.34418 * 124.35255 * 239.97420 * 5 2 1 25 25 O 1.21281 * 124.93992 * 0.46350 * 24 5 2 26 26 H 1.08998 * 109.46474 * 300.00458 * 1 2 3 27 27 H 1.09004 * 109.46842 * 59.99695 * 1 2 3 28 28 H 1.08998 * 109.47349 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46924 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46815 * 300.00005 * 3 2 1 31 31 H 1.09000 * 109.46978 * 59.99827 * 3 2 1 32 32 H 1.08999 * 109.47475 * 300.00510 * 4 2 1 33 33 H 1.09004 * 109.46743 * 60.00621 * 4 2 1 34 34 H 1.08993 * 109.47174 * 179.97438 * 4 2 1 35 35 H 1.09006 * 110.24460 * 43.96615 * 6 5 2 36 36 H 1.08997 * 110.32067 * 282.00583 * 6 5 2 37 37 H 0.96990 * 120.00186 * 179.97438 * 15 14 12 38 38 H 1.09000 * 115.55554 * 328.76268 * 20 11 9 39 39 H 1.09002 * 117.49790 * 0.02562 * 21 20 11 40 40 H 1.09005 * 117.49546 * 145.02322 * 21 20 11 41 41 H 1.08995 * 117.50434 * 214.97997 * 22 20 11 42 42 H 1.09002 * 117.49391 * 359.97438 * 22 20 11 43 43 H 1.09002 * 110.48428 * 93.87932 * 23 7 6 44 44 H 1.08993 * 110.48756 * 216.52211 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 1.7232 -2.0907 1.5225 7 6 2.7668 -2.4946 2.5874 8 1 2.3302 -3.1667 3.3262 9 6 3.9793 -3.1178 1.9452 10 8 4.0310 -3.2414 0.7397 11 7 5.0037 -3.5434 2.7108 12 6 6.1043 -4.1154 2.1270 13 1 7.0913 -3.9005 2.5090 14 6 5.9498 -4.9717 1.0436 15 7 6.9534 -5.1778 0.2206 16 14 4.3157 -5.8300 0.7569 17 1 3.4898 -5.0231 -0.1768 18 1 4.5578 -7.1724 0.1699 19 1 3.6002 -5.9769 2.0499 20 6 4.9410 -3.3944 4.1669 21 6 6.1649 -3.8304 4.9749 22 6 4.8871 -4.6727 5.0060 23 6 3.1168 -1.1277 3.2202 24 6 2.7948 -0.1236 2.1355 25 8 3.1804 1.0261 2.1167 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2493 33 1 1.6767 -0.2075 -2.1392 34 1 3.1299 -0.7210 -1.2495 35 1 1.8285 -2.7152 0.6353 36 1 0.7157 -2.1804 1.9287 37 1 6.8457 -5.7758 -0.5354 38 1 4.3811 -2.5316 4.5276 39 1 7.0169 -4.2276 4.4230 40 1 6.4099 -3.2546 5.8674 41 1 4.2921 -4.6507 5.9190 42 1 4.8979 -5.6243 4.4746 43 1 2.5021 -0.9470 4.1021 44 1 4.1752 -1.0859 3.4768 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346540278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:00 Heat of formation + Delta-G solvation = -40.408376 kcal Electronic energy + Delta-G solvation = -25875.313803 eV Core-core repulsion = 22407.668214 eV Total energy + Delta-G solvation = -3467.645589 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.13879 -40.54593 -38.14499 -37.66998 -36.55263 -34.85320 -33.43717 -31.55005 -28.91523 -28.24680 -28.12505 -27.20700 -24.35283 -23.16291 -22.89339 -22.14722 -20.97111 -19.62758 -19.15897 -17.99455 -17.54676 -17.15852 -16.85790 -16.29355 -15.86382 -15.73068 -15.24209 -15.04809 -14.97796 -14.76467 -14.57216 -14.54837 -14.08633 -13.82351 -13.61133 -13.10700 -13.04895 -12.98860 -12.87768 -12.66842 -12.51919 -12.44255 -12.28079 -12.13331 -12.09566 -12.00805 -11.95781 -11.55385 -11.19165 -10.71033 -10.41595 -10.32232 -9.62342 -9.39097 -8.41681 -6.12554 1.22567 1.35151 1.51385 1.58792 1.90311 2.06098 2.43999 2.58215 2.97221 3.23569 3.34919 3.45397 3.68965 3.85125 3.91898 3.98238 4.08136 4.11049 4.19816 4.35358 4.43904 4.52942 4.59640 4.66315 4.67970 4.74223 4.79051 4.86178 4.89888 4.92183 4.92275 4.94359 5.02971 5.15714 5.26626 5.28534 5.36546 5.48040 5.69456 5.73093 5.85274 6.21051 6.76046 6.90583 7.21354 7.37369 7.88640 8.66679 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.006624 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.593427 B = 4226.346591 C = 5024.337715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.164 3.836 3 C -0.129 4.129 4 C -0.150 4.150 5 N -0.603 5.603 6 C 0.115 3.885 7 C -0.111 4.111 8 H 0.155 0.845 9 C 0.445 3.555 10 O -0.579 6.579 11 N -0.446 5.446 12 C -0.343 4.343 13 H 0.065 0.935 14 C 0.039 3.961 15 N -0.914 5.914 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.316 1.316 19 H -0.255 1.255 20 C 0.037 3.963 21 C -0.178 4.178 22 C -0.177 4.177 23 C -0.138 4.138 24 C 0.508 3.492 25 O -0.572 6.572 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.022 0.978 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.270 0.730 38 H 0.158 0.842 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.067 0.933 43 H 0.160 0.840 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 6.409 8.321 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.081 3.919 3 C -0.186 4.186 4 C -0.208 4.208 5 N -0.335 5.335 6 C -0.008 4.008 7 C -0.133 4.133 8 H 0.172 0.828 9 C 0.236 3.764 10 O -0.464 6.464 11 N -0.166 5.166 12 C -0.470 4.470 13 H 0.082 0.918 14 C -0.165 4.165 15 N -0.552 5.552 16 Si 0.797 3.203 17 H -0.192 1.192 18 H -0.247 1.247 19 H -0.179 1.179 20 C -0.067 4.067 21 C -0.215 4.215 22 C -0.215 4.215 23 C -0.178 4.178 24 C 0.297 3.703 25 O -0.453 6.453 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.079 0.921 38 H 0.175 0.825 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.085 0.915 43 H 0.177 0.823 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.734 6.901 7.497 19.592 hybrid contribution 0.708 -0.863 -0.901 1.435 sum -16.026 6.037 6.596 18.352 Atomic orbital electron populations 1.22079 0.91252 1.03252 1.03519 1.20662 0.95839 0.92079 0.83286 1.21959 1.00224 0.94079 1.02362 1.22106 0.99814 1.00919 0.97935 1.48483 1.50116 1.12855 1.22086 1.22100 0.98762 0.81245 0.98643 1.22311 0.93627 0.97944 0.99388 0.82774 1.20951 0.86746 0.81393 0.87271 1.90525 1.80739 1.58918 1.16246 1.43252 1.16005 1.52653 1.04718 1.18619 0.86504 1.26906 1.14937 0.91777 1.26025 1.00469 0.95768 0.94230 1.69886 1.35445 1.36257 1.13641 0.85502 0.81219 0.74033 0.79561 1.19246 1.24657 1.17892 1.22446 1.04788 0.99984 0.79454 1.23169 0.92432 1.04219 1.01698 1.23339 1.01122 0.94874 1.02214 1.22526 1.05317 0.90929 0.99009 1.21275 0.76969 0.87774 0.84325 1.90669 1.56101 1.19575 1.78990 0.91704 0.89596 0.91334 0.95027 0.90208 0.92096 0.92567 0.89232 0.95870 0.91244 0.86126 0.92100 0.82537 0.91108 0.85486 0.84488 0.91474 0.82291 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.54 71.98 0.61 -1.99 16 2 C 0.16 4.39 1.20 3.61 0.00 4.39 16 3 C -0.13 -3.65 7.00 71.98 0.50 -3.14 16 4 C -0.15 -4.38 8.49 71.98 0.61 -3.77 16 5 N -0.60 -17.84 2.76 -771.03 -2.13 -19.97 16 6 C 0.12 3.06 5.93 86.83 0.51 3.57 16 7 C -0.11 -3.14 2.66 -10.48 -0.03 -3.16 16 8 H 0.15 3.07 8.04 -2.38 -0.02 3.05 16 9 C 0.44 19.27 5.26 87.66 0.46 19.73 16 10 O -0.58 -30.68 10.59 -3.08 -0.03 -30.71 16 11 N -0.45 -20.07 2.55 -613.13 -1.56 -21.63 16 12 C -0.34 -19.34 8.78 84.04 0.74 -18.60 16 13 H 0.06 3.93 6.89 -2.91 -0.02 3.91 16 14 C 0.04 2.31 4.79 84.92 0.41 2.72 16 15 N -0.91 -58.47 13.96 21.66 0.30 -58.17 16 16 Si 0.97 49.70 24.83 68.60 1.70 51.40 16 17 H -0.27 -14.21 6.11 99.48 0.61 -13.60 16 18 H -0.32 -16.21 7.11 99.48 0.71 -15.51 16 19 H -0.25 -11.74 7.11 99.48 0.71 -11.03 16 20 C 0.04 1.19 5.37 44.99 0.24 1.44 16 21 C -0.18 -5.49 9.80 30.62 0.30 -5.19 16 22 C -0.18 -4.98 10.36 30.62 0.32 -4.66 16 23 C -0.14 -3.51 5.16 30.59 0.16 -3.35 16 24 C 0.51 16.66 7.84 87.90 0.69 17.35 16 25 O -0.57 -22.37 13.99 -3.03 -0.04 -22.42 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.07 1.14 7.90 -2.39 -0.02 1.12 16 29 H 0.03 1.11 7.08 -2.39 -0.02 1.10 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.78 7.06 -2.39 -0.02 1.77 16 32 H 0.06 1.68 7.21 -2.39 -0.02 1.66 16 33 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 2.27 6.00 -2.38 -0.01 2.26 16 36 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.27 16.39 8.31 -92.72 -0.77 15.61 16 38 H 0.16 3.70 5.17 -2.39 -0.01 3.68 16 39 H 0.07 2.78 6.46 -2.39 -0.02 2.76 16 40 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 41 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 43 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.10 2.77 6.29 -2.39 -0.02 2.75 16 Total: -1.00 -82.22 338.00 4.67 -77.55 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.89 Total: 18.62 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 5.53 Total: 5.33 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -3.39 Total: -99.78 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -0.08 Total: -53.13 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.70 Total: 51.40 kcal Total: -82.22 4.67 -77.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346540278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.142 kcal (2) G-P(sol) polarization free energy of solvation -82.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds