Wall clock time and date at job start Tue Mar 31 2020 07:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47120 * 2 1 4 4 C 1.52997 * 109.47155 * 239.99590 * 2 1 3 5 5 N 1.46498 * 109.46741 * 119.99780 * 2 1 3 6 6 C 1.46868 * 124.33588 * 179.97438 * 5 2 1 7 7 C 1.54485 * 105.42385 * 197.02296 * 6 5 2 8 8 H 1.09005 * 110.96727 * 216.44463 * 7 6 5 9 9 C 1.50694 * 110.96890 * 92.71512 * 7 6 5 10 10 O 1.21288 * 120.00255 * 3.09329 * 9 7 6 11 11 N 1.34779 * 119.99917 * 183.08542 * 9 7 6 12 12 C 1.37100 * 120.00157 * 179.97438 * 11 9 7 13 13 H 1.07998 * 119.99781 * 137.37110 * 12 11 9 14 14 C 1.38954 * 119.99840 * 317.37279 * 12 11 9 15 15 N 1.31405 * 120.00067 * 340.06755 * 14 12 11 16 16 Si 1.86802 * 119.99719 * 160.07393 * 14 12 11 17 17 H 1.48503 * 109.47183 * 59.99730 * 16 14 12 18 18 H 1.48500 * 109.46793 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47129 * 299.99820 * 16 14 12 20 20 C 1.46500 * 119.99810 * 0.02562 * 11 9 7 21 21 C 1.53008 * 117.49968 * 166.00260 * 20 11 9 22 22 C 1.53005 * 60.00055 * 107.48626 * 21 20 11 23 23 C 1.54628 * 101.79780 * 334.57991 * 7 6 5 24 24 C 1.34415 * 124.35236 * 359.97438 * 5 2 1 25 25 O 1.21274 * 124.94304 * 359.62080 * 24 5 2 26 26 H 1.08995 * 109.47604 * 300.00352 * 1 2 3 27 27 H 1.09002 * 109.47208 * 60.00262 * 1 2 3 28 28 H 1.08999 * 109.47463 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46866 * 299.99947 * 3 2 1 31 31 H 1.08995 * 109.47115 * 59.99936 * 3 2 1 32 32 H 1.09000 * 109.47749 * 300.00476 * 4 2 1 33 33 H 1.09008 * 109.47175 * 60.00626 * 4 2 1 34 34 H 1.09005 * 109.47364 * 179.97438 * 4 2 1 35 35 H 1.08997 * 110.25911 * 78.04341 * 6 5 2 36 36 H 1.09001 * 110.28367 * 316.01342 * 6 5 2 37 37 H 0.97003 * 119.99804 * 175.06924 * 15 14 12 38 38 H 1.08997 * 115.56795 * 20.30746 * 20 11 9 39 39 H 1.08994 * 117.49828 * 214.97908 * 21 20 11 40 40 H 1.08999 * 117.49715 * 359.97438 * 21 20 11 41 41 H 1.09002 * 117.49240 * 252.51298 * 22 21 20 42 42 H 1.08999 * 117.49913 * 107.49132 * 22 21 20 43 43 H 1.08996 * 110.49024 * 143.49529 * 23 7 6 44 44 H 1.09008 * 110.48652 * 266.14263 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1962 6 6 3.4377 -0.8795 1.5223 7 6 3.4692 -1.9977 2.5877 8 1 4.2484 -1.8105 3.3267 9 6 3.6517 -3.3489 1.9461 10 8 3.8072 -3.4345 0.7462 11 7 3.6424 -4.4624 2.7055 12 6 3.8079 -5.6918 2.1217 13 1 4.4464 -6.4285 2.5862 14 6 3.1540 -5.9898 0.9324 15 7 2.1022 -5.2915 0.5680 16 14 3.7702 -7.3832 -0.1484 17 1 3.7270 -8.6570 0.6138 18 1 2.9057 -7.4966 -1.3505 19 1 5.1673 -7.1041 -0.5673 20 6 3.4542 -4.3590 4.1547 21 6 3.1257 -5.6438 4.9179 22 6 4.5105 -5.0070 5.0522 23 6 2.0642 -1.8709 3.2208 24 6 1.2247 -1.2326 2.1361 25 8 0.0123 -1.2134 2.1170 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1393 34 1 3.1300 -0.7209 -1.2494 35 1 3.8573 0.0407 1.9288 36 1 3.9914 -1.1877 0.6355 37 1 1.6889 -5.4516 -0.2948 38 1 2.9952 -3.4344 4.5047 39 1 2.4505 -5.5644 5.7698 40 1 3.0492 -6.5658 4.3417 41 1 5.3452 -5.5103 4.5643 42 1 4.7463 -4.5087 5.9925 43 1 1.6714 -2.8546 3.4779 44 1 2.0992 -1.2307 4.1023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346540279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:04 Heat of formation + Delta-G solvation = -21.612880 kcal Electronic energy + Delta-G solvation = -25914.175875 eV Core-core repulsion = 22447.345320 eV Total energy + Delta-G solvation = -3466.830555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.50894 -38.49537 -36.38322 -36.12164 -34.89794 -32.75122 -31.13561 -29.84588 -27.51784 -27.10179 -26.67083 -25.23168 -22.59524 -21.67950 -21.42244 -20.61488 -19.19787 -18.14271 -16.94356 -16.19874 -16.04678 -15.33150 -14.74127 -14.64736 -14.36677 -13.91971 -13.65449 -13.60094 -13.39993 -13.30668 -12.93714 -12.64907 -12.31174 -11.98975 -11.92426 -11.73114 -11.59650 -11.34285 -11.27087 -11.00693 -10.96417 -10.87290 -10.79416 -10.69789 -10.67054 -10.51295 -10.21754 -10.01573 -9.75873 -8.89427 -8.70561 -8.18999 -8.05577 -7.06615 -6.09537 -3.88309 3.12806 3.31121 3.38520 3.40952 3.42683 3.97369 4.24944 4.68332 4.72051 4.81149 4.97417 5.14483 5.17411 5.23948 5.29617 5.39993 5.48509 5.58397 5.68124 5.76548 5.78687 5.79989 5.81501 5.90729 5.97783 6.02776 6.04587 6.09324 6.20127 6.22219 6.31076 6.32154 6.38083 6.46570 6.65238 6.69969 6.72878 6.95132 7.11834 7.60586 7.65696 8.23715 8.73735 9.03390 9.11370 9.63676 10.23052 10.95933 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.006606 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.023679 B = 4237.863611 C = 5176.000526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.176 3.824 3 C -0.153 4.153 4 C -0.153 4.153 5 N -0.600 5.600 6 C 0.120 3.880 7 C -0.120 4.120 8 H 0.103 0.897 9 C 0.489 3.511 10 O -0.525 6.525 11 N -0.422 5.422 12 C -0.349 4.349 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.822 5.822 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.064 3.936 21 C -0.178 4.178 22 C -0.205 4.205 23 C -0.150 4.150 24 C 0.530 3.470 25 O -0.539 6.539 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.264 0.736 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 10.364 4.048 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.092 3.908 3 C -0.212 4.212 4 C -0.211 4.211 5 N -0.333 5.333 6 C -0.004 4.004 7 C -0.143 4.143 8 H 0.121 0.879 9 C 0.276 3.724 10 O -0.402 6.402 11 N -0.142 5.142 12 C -0.475 4.475 13 H 0.095 0.905 14 C -0.136 4.136 15 N -0.455 5.455 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.042 4.042 21 C -0.216 4.216 22 C -0.244 4.244 23 C -0.191 4.191 24 C 0.318 3.682 25 O -0.417 6.417 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.130 0.870 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.312 10.356 3.184 10.913 hybrid contribution 0.366 -0.772 -0.438 0.960 sum 1.679 9.584 2.746 10.110 Atomic orbital electron populations 1.22065 0.92590 1.03732 1.01123 1.20358 0.94974 0.90954 0.84477 1.22168 1.01389 0.95608 1.01991 1.22125 1.01687 1.01599 0.95738 1.48233 1.07161 1.56034 1.21912 1.21905 0.82452 0.96274 0.99730 1.22337 0.97456 0.96337 0.98150 0.87854 1.19346 0.81980 0.83767 0.87335 1.90519 1.50166 1.85396 1.14098 1.42697 1.64128 1.05421 1.01917 1.18787 1.28304 0.91638 1.08797 0.90519 1.25137 0.92805 0.96924 0.98702 1.69893 1.15879 1.39711 1.20003 0.86395 0.79117 0.81300 0.79939 1.20423 1.21320 1.20113 1.21979 1.01511 0.96616 0.84069 1.23089 0.97433 0.99306 1.01730 1.23265 0.93870 1.06137 1.01120 1.22509 0.95050 1.03714 0.97807 1.20665 0.87246 0.77019 0.83261 1.90658 1.12931 1.59972 1.78127 0.91655 0.93053 0.91038 0.92345 0.91699 0.92530 0.91320 0.92328 0.92182 0.91826 0.88749 0.92581 0.87099 0.89879 0.87517 0.89015 0.89838 0.87037 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 7.00 37.16 0.26 -1.98 16 2 C 0.18 2.76 1.20 -131.82 -0.16 2.60 16 3 C -0.15 -1.85 8.54 37.16 0.32 -1.54 16 4 C -0.15 -2.47 8.49 37.16 0.32 -2.15 16 5 N -0.60 -10.50 2.76 -157.50 -0.43 -10.94 16 6 C 0.12 1.93 5.96 -3.06 -0.02 1.92 16 7 C -0.12 -2.10 2.63 -90.14 -0.24 -2.34 16 8 H 0.10 1.47 8.12 -51.93 -0.42 1.05 16 9 C 0.49 11.47 6.34 -10.99 -0.07 11.40 16 10 O -0.52 -14.31 13.18 5.55 0.07 -14.23 16 11 N -0.42 -9.99 2.86 -107.72 -0.31 -10.29 16 12 C -0.35 -9.21 7.66 -14.93 -0.11 -9.32 16 13 H 0.08 1.98 7.47 -52.49 -0.39 1.58 16 14 C 0.08 2.09 4.33 -17.47 -0.08 2.01 16 15 N -0.82 -24.03 11.71 55.50 0.65 -23.38 16 16 Si 0.91 21.75 29.60 -169.99 -5.03 16.72 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.06 1.22 5.34 -67.92 -0.36 0.85 16 21 C -0.18 -3.14 9.84 -26.72 -0.26 -3.41 16 22 C -0.20 -3.35 10.12 -26.72 -0.27 -3.62 16 23 C -0.15 -2.58 5.03 -26.74 -0.13 -2.71 16 24 C 0.53 10.43 7.84 -10.86 -0.09 10.34 16 25 O -0.54 -11.98 13.99 5.56 0.08 -11.90 16 26 H 0.06 1.10 7.06 -51.93 -0.37 0.73 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.40 7.08 -51.93 -0.37 1.03 16 29 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.06 0.96 7.21 -51.93 -0.37 0.59 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.70 5.96 -51.93 -0.31 1.40 16 37 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 38 H 0.11 1.82 4.97 -51.93 -0.26 1.57 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.11 2.14 7.05 -51.93 -0.37 1.78 16 41 H 0.09 1.62 7.99 -51.93 -0.41 1.21 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.11 2.18 6.12 -51.93 -0.32 1.86 16 44 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -32.89 344.26 -7.62 -40.51 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.94 Total: 6.28 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.90 Total: 2.05 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.09 Total: -44.61 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: 0.15 Total: -26.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.89 -7.62 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346540279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.896 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds