Wall clock time and date at job start Tue Mar 31 2020 07:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47120 * 2 1 4 4 C 1.52997 * 109.47155 * 239.99590 * 2 1 3 5 5 N 1.46498 * 109.46741 * 119.99780 * 2 1 3 6 6 C 1.46868 * 124.33588 * 179.97438 * 5 2 1 7 7 C 1.54485 * 105.42385 * 197.02296 * 6 5 2 8 8 H 1.09005 * 110.96727 * 216.44463 * 7 6 5 9 9 C 1.50694 * 110.96890 * 92.71512 * 7 6 5 10 10 O 1.21288 * 120.00255 * 3.09329 * 9 7 6 11 11 N 1.34779 * 119.99917 * 183.08542 * 9 7 6 12 12 C 1.37100 * 120.00157 * 179.97438 * 11 9 7 13 13 H 1.07998 * 119.99781 * 137.37110 * 12 11 9 14 14 C 1.38954 * 119.99840 * 317.37279 * 12 11 9 15 15 N 1.31405 * 120.00067 * 340.06755 * 14 12 11 16 16 Si 1.86802 * 119.99719 * 160.07393 * 14 12 11 17 17 H 1.48503 * 109.47183 * 59.99730 * 16 14 12 18 18 H 1.48500 * 109.46793 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47129 * 299.99820 * 16 14 12 20 20 C 1.46500 * 119.99810 * 0.02562 * 11 9 7 21 21 C 1.53008 * 117.49968 * 166.00260 * 20 11 9 22 22 C 1.53005 * 60.00055 * 107.48626 * 21 20 11 23 23 C 1.54628 * 101.79780 * 334.57991 * 7 6 5 24 24 C 1.34415 * 124.35236 * 359.97438 * 5 2 1 25 25 O 1.21274 * 124.94304 * 359.62080 * 24 5 2 26 26 H 1.08995 * 109.47604 * 300.00352 * 1 2 3 27 27 H 1.09002 * 109.47208 * 60.00262 * 1 2 3 28 28 H 1.08999 * 109.47463 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46866 * 299.99947 * 3 2 1 31 31 H 1.08995 * 109.47115 * 59.99936 * 3 2 1 32 32 H 1.09000 * 109.47749 * 300.00476 * 4 2 1 33 33 H 1.09008 * 109.47175 * 60.00626 * 4 2 1 34 34 H 1.09005 * 109.47364 * 179.97438 * 4 2 1 35 35 H 1.08997 * 110.25911 * 78.04341 * 6 5 2 36 36 H 1.09001 * 110.28367 * 316.01342 * 6 5 2 37 37 H 0.97003 * 119.99804 * 175.06924 * 15 14 12 38 38 H 1.08997 * 115.56795 * 20.30746 * 20 11 9 39 39 H 1.08994 * 117.49828 * 214.97908 * 21 20 11 40 40 H 1.08999 * 117.49715 * 359.97438 * 21 20 11 41 41 H 1.09002 * 117.49240 * 252.51298 * 22 21 20 42 42 H 1.08999 * 117.49913 * 107.49132 * 22 21 20 43 43 H 1.08996 * 110.49024 * 143.49529 * 23 7 6 44 44 H 1.09008 * 110.48652 * 266.14263 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1962 6 6 3.4377 -0.8795 1.5223 7 6 3.4692 -1.9977 2.5877 8 1 4.2484 -1.8105 3.3267 9 6 3.6517 -3.3489 1.9461 10 8 3.8072 -3.4345 0.7462 11 7 3.6424 -4.4624 2.7055 12 6 3.8079 -5.6918 2.1217 13 1 4.4464 -6.4285 2.5862 14 6 3.1540 -5.9898 0.9324 15 7 2.1022 -5.2915 0.5680 16 14 3.7702 -7.3832 -0.1484 17 1 3.7270 -8.6570 0.6138 18 1 2.9057 -7.4966 -1.3505 19 1 5.1673 -7.1041 -0.5673 20 6 3.4542 -4.3590 4.1547 21 6 3.1257 -5.6438 4.9179 22 6 4.5105 -5.0070 5.0522 23 6 2.0642 -1.8709 3.2208 24 6 1.2247 -1.2326 2.1361 25 8 0.0123 -1.2134 2.1170 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1393 34 1 3.1300 -0.7209 -1.2494 35 1 3.8573 0.0407 1.9288 36 1 3.9914 -1.1877 0.6355 37 1 1.6889 -5.4516 -0.2948 38 1 2.9952 -3.4344 4.5047 39 1 2.4505 -5.5644 5.7698 40 1 3.0492 -6.5658 4.3417 41 1 5.3452 -5.5103 4.5643 42 1 4.7463 -4.5087 5.9925 43 1 1.6714 -2.8546 3.4779 44 1 2.0992 -1.2307 4.1023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346540279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:03 Heat of formation + Delta-G solvation = -42.761404 kcal Electronic energy + Delta-G solvation = -25915.092944 eV Core-core repulsion = 22447.345320 eV Total energy + Delta-G solvation = -3467.747624 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94303 -40.14292 -37.92364 -37.55554 -36.39551 -34.65840 -32.91381 -31.33440 -28.84953 -28.21611 -28.03397 -27.12147 -24.15982 -23.03292 -22.87499 -22.05101 -20.91578 -19.55586 -18.55446 -17.82634 -17.50836 -16.96756 -16.50739 -16.13893 -15.93805 -15.49598 -15.10486 -15.02798 -14.81410 -14.68927 -14.42340 -14.04989 -13.85915 -13.58366 -13.22389 -13.03683 -12.96349 -12.84981 -12.78829 -12.70288 -12.56965 -12.29296 -12.24916 -12.20123 -12.14494 -11.99758 -11.92658 -11.68075 -11.15949 -10.67295 -10.36220 -9.88592 -9.54100 -8.94986 -8.15883 -5.96190 1.34388 1.40960 1.45128 1.65850 2.14911 2.25101 2.39903 3.03023 3.15457 3.37828 3.46546 3.60641 3.90410 3.91942 3.95739 4.07483 4.13592 4.21861 4.32878 4.44990 4.54607 4.60264 4.63110 4.68621 4.70514 4.79861 4.80866 4.91445 4.93728 4.95006 4.97345 5.03932 5.11014 5.17527 5.30782 5.33230 5.40694 5.48390 5.52916 5.80916 6.18856 6.27887 7.06203 7.22426 7.29298 7.75121 8.39106 8.86537 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.006606 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.023679 B = 4237.863611 C = 5176.000526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 C -0.141 4.141 4 C -0.145 4.145 5 N -0.600 5.600 6 C 0.120 3.880 7 C -0.110 4.110 8 H 0.150 0.850 9 C 0.475 3.525 10 O -0.576 6.576 11 N -0.441 5.441 12 C -0.349 4.349 13 H 0.076 0.924 14 C 0.025 3.975 15 N -0.861 5.861 16 Si 0.957 3.043 17 H -0.260 1.260 18 H -0.295 1.295 19 H -0.279 1.279 20 C 0.040 3.960 21 C -0.185 4.185 22 C -0.175 4.175 23 C -0.141 4.141 24 C 0.510 3.490 25 O -0.579 6.579 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.251 0.749 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 12.746 6.143 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 C -0.199 4.199 4 C -0.203 4.203 5 N -0.333 5.333 6 C -0.002 4.002 7 C -0.132 4.132 8 H 0.167 0.833 9 C 0.264 3.736 10 O -0.456 6.456 11 N -0.161 5.161 12 C -0.476 4.476 13 H 0.094 0.906 14 C -0.181 4.181 15 N -0.496 5.496 16 Si 0.783 3.217 17 H -0.185 1.185 18 H -0.221 1.221 19 H -0.205 1.205 20 C -0.065 4.065 21 C -0.223 4.223 22 C -0.213 4.213 23 C -0.181 4.181 24 C 0.299 3.701 25 O -0.460 6.460 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.146 0.854 43 H 0.103 0.897 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.948 12.720 5.315 14.097 hybrid contribution -0.081 -1.545 -1.056 1.873 sum 2.866 11.175 4.258 12.298 Atomic orbital electron populations 1.21940 0.93407 1.01015 1.02177 1.20636 0.94473 0.93253 0.83457 1.22065 1.02090 0.92320 1.03429 1.22052 1.01444 0.98991 0.97771 1.48442 1.07681 1.55335 1.21805 1.22075 0.81458 0.97935 0.98744 1.22329 0.99000 0.92763 0.99128 0.83290 1.20410 0.80304 0.85882 0.87029 1.90488 1.51990 1.86670 1.16487 1.42949 1.64236 1.04722 1.04212 1.18985 1.27085 0.92778 1.08773 0.90623 1.25877 0.93071 0.98921 1.00246 1.70031 1.17664 1.42260 1.19677 0.85572 0.77921 0.79802 0.78388 1.18496 1.22123 1.20517 1.22316 1.04160 0.98482 0.81507 1.23116 0.99645 0.97309 1.02182 1.23290 0.92168 1.04245 1.01618 1.22506 0.93701 1.03062 0.98797 1.21235 0.87193 0.77154 0.84490 1.90633 1.14574 1.61524 1.79268 0.92288 0.90155 0.95604 0.91096 0.89524 0.91875 0.96479 0.89347 0.92291 0.86594 0.91035 0.93945 0.84141 0.86815 0.90867 0.90779 0.85413 0.89665 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.00 71.98 0.50 -3.69 16 2 C 0.16 5.02 1.20 3.60 0.00 5.03 16 3 C -0.14 -2.93 8.54 71.98 0.61 -2.31 16 4 C -0.14 -4.72 8.49 71.98 0.61 -4.11 16 5 N -0.60 -20.47 2.76 -770.80 -2.13 -22.60 16 6 C 0.12 3.60 5.96 86.81 0.52 4.12 16 7 C -0.11 -3.58 2.63 -10.48 -0.03 -3.60 16 8 H 0.15 3.48 8.12 -2.38 -0.02 3.46 16 9 C 0.48 22.36 6.34 87.65 0.56 22.91 16 10 O -0.58 -32.55 13.18 -3.05 -0.04 -32.59 16 11 N -0.44 -20.94 2.86 -613.11 -1.75 -22.69 16 12 C -0.35 -18.85 7.66 84.04 0.64 -18.21 16 13 H 0.08 3.98 7.47 -2.91 -0.02 3.96 16 14 C 0.03 1.45 4.33 84.93 0.37 1.81 16 15 N -0.86 -53.20 11.71 21.66 0.25 -52.95 16 16 Si 0.96 46.41 29.60 68.60 2.03 48.44 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 19 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 20 C 0.04 1.43 5.34 45.00 0.24 1.68 16 21 C -0.18 -6.23 9.84 30.60 0.30 -5.93 16 22 C -0.17 -5.15 10.12 30.60 0.31 -4.84 16 23 C -0.14 -4.51 5.03 30.59 0.15 -4.35 16 24 C 0.51 19.94 7.84 87.90 0.69 20.63 16 25 O -0.58 -26.47 13.99 -3.01 -0.04 -26.51 16 26 H 0.06 1.99 7.06 -2.39 -0.02 1.97 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.02 1.05 7.08 -2.39 -0.02 1.03 16 29 H 0.07 1.32 7.90 -2.39 -0.02 1.30 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.06 1.90 7.21 -2.38 -0.02 1.89 16 35 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.53 5.96 -2.39 -0.01 2.51 16 37 H 0.25 15.52 8.32 -92.71 -0.77 14.75 16 38 H 0.14 4.12 4.97 -2.39 -0.01 4.11 16 39 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.07 2.97 7.05 -2.39 -0.02 2.95 16 41 H 0.07 2.47 7.99 -2.39 -0.02 2.45 16 42 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.08 3.25 6.12 -2.39 -0.01 3.24 16 44 H 0.15 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -79.66 344.26 4.80 -74.86 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.99 Total: 24.92 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.49 Total: 9.13 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -3.62 Total: -98.24 kcal Atomic # 8 Polarization: -59.02 SS G_CDS: -0.08 Total: -59.10 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -79.66 4.80 -74.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346540279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.100 kcal (2) G-P(sol) polarization free energy of solvation -79.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds