Wall clock time and date at job start Tue Mar 31 2020 07:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46833 * 2 1 4 4 C 1.53002 * 109.47154 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47163 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.53941 * 307.83586 * 6 5 4 8 8 N 1.47318 * 110.59665 * 70.82745 * 6 5 4 9 9 C 1.34525 * 106.61716 * 118.53219 * 8 6 5 10 10 O 1.21540 * 123.77133 * 180.02562 * 9 8 6 11 11 N 1.33797 * 112.46045 * 359.97438 * 9 8 6 12 12 C 1.46501 * 124.17900 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46773 * 269.06917 * 12 11 9 14 14 C 1.50702 * 115.54762 * 186.10031 * 13 12 11 15 15 H 1.07996 * 119.99522 * 144.59223 * 14 13 12 16 16 C 1.37870 * 120.00087 * 324.59866 * 14 13 12 17 17 N 1.31519 * 120.00432 * 351.04585 * 16 14 13 18 18 Si 1.86806 * 119.99864 * 171.05121 * 16 14 13 19 19 H 1.48500 * 109.47084 * 90.00125 * 18 16 14 20 20 H 1.48501 * 109.46829 * 209.99760 * 18 16 14 21 21 H 1.48497 * 109.47072 * 329.99597 * 18 16 14 22 22 C 1.53007 * 117.49920 * 40.43451 * 13 12 11 23 23 C 1.53000 * 117.50066 * 331.77475 * 13 12 11 24 24 C 1.34768 * 111.64357 * 0.02562 * 11 9 8 25 25 O 1.21229 * 127.16080 * 180.02562 * 24 11 9 26 26 H 1.09004 * 109.47366 * 299.99787 * 1 2 3 27 27 H 1.09007 * 109.46797 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47381 * 60.00465 * 1 2 3 29 29 H 1.08999 * 109.47101 * 119.99094 * 2 1 3 30 30 H 1.08994 * 109.47326 * 240.00213 * 2 1 3 31 31 H 1.08999 * 109.46537 * 299.99439 * 3 2 1 32 32 H 1.08993 * 109.47506 * 59.99439 * 3 2 1 33 33 H 1.09001 * 109.46799 * 299.99918 * 4 3 2 34 34 H 1.09004 * 109.47040 * 59.99573 * 4 3 2 35 35 H 1.09001 * 109.47629 * 299.99836 * 5 4 3 36 36 H 1.09004 * 109.47229 * 60.00115 * 5 4 3 37 37 H 0.96998 * 126.69245 * 298.50453 * 8 6 5 38 38 H 1.08999 * 109.47233 * 29.06669 * 12 11 9 39 39 H 1.08990 * 109.46915 * 149.07127 * 12 11 9 40 40 H 0.96999 * 120.00154 * 185.01000 * 17 16 14 41 41 H 1.08999 * 117.49913 * 0.02562 * 22 13 12 42 42 H 1.08998 * 117.49574 * 145.01773 * 22 13 12 43 43 H 1.08997 * 117.49494 * 214.98193 * 23 13 12 44 44 H 1.09001 * 117.49774 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 6 4.0798 2.8852 -0.0013 6 6 5.6098 2.8853 -0.0013 7 1 5.9923 2.2596 0.8051 8 7 6.1281 2.4319 -1.3036 9 6 6.8397 3.4543 -1.8116 10 8 7.4082 3.4142 -2.8851 11 7 6.8509 4.5206 -1.0034 12 6 7.5469 5.7741 -1.3044 13 6 8.9683 5.7161 -0.7411 14 6 9.7622 6.9925 -0.8478 15 1 10.4540 7.2651 -0.0645 16 6 9.6054 7.8122 -1.9452 17 7 8.9016 7.4016 -2.9776 18 14 10.3926 9.5062 -1.9658 19 1 11.7575 9.4107 -2.5431 20 1 9.5688 10.4248 -2.7921 21 1 10.4773 10.0296 -0.5787 22 6 9.7301 4.3965 -0.8805 23 6 9.2056 4.8371 0.4885 24 6 6.1428 4.2990 0.1216 25 8 5.9678 5.0702 1.0405 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9565 0.8899 33 1 3.9336 0.9287 0.8891 34 1 3.9329 0.9289 -0.8909 35 1 3.7161 3.3988 -0.8913 36 1 3.7168 3.3993 0.8887 37 1 5.9846 1.5650 -1.7145 38 1 7.5895 5.9158 -2.3843 39 1 7.0095 6.6061 -0.8497 40 1 8.8513 7.9471 -3.7781 41 1 9.2189 3.5698 -1.3738 42 1 10.8056 4.4517 -1.0489 43 1 9.9363 5.1819 1.2201 44 1 8.3490 4.3004 0.8964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348664012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:40 Heat of formation + Delta-G solvation = -37.757201 kcal Electronic energy + Delta-G solvation = -24403.547929 eV Core-core repulsion = 20936.017304 eV Total energy + Delta-G solvation = -3467.530625 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.02038 -38.05907 -37.26641 -36.38964 -35.51901 -33.77848 -32.21022 -31.98810 -28.54138 -27.05236 -25.55414 -24.68076 -22.64395 -21.47621 -21.31753 -20.96458 -20.43345 -18.80294 -17.50298 -16.99024 -16.40488 -15.90710 -15.73965 -15.12519 -14.96174 -14.54919 -14.31509 -14.19964 -13.80727 -13.67036 -13.39506 -13.22291 -12.90704 -12.34025 -12.13838 -12.00348 -11.88249 -11.54963 -11.29637 -11.15509 -11.09333 -10.98215 -10.79846 -10.77708 -10.50890 -10.29054 -10.18370 -10.02555 -9.60929 -9.21564 -9.10412 -8.90701 -8.57796 -8.07063 -6.09608 -4.14286 2.07211 2.80534 3.26798 3.34071 3.38579 3.49139 3.59896 4.25772 4.34309 4.40782 4.58971 4.70685 4.82297 4.92389 4.96551 5.06671 5.15742 5.37626 5.43249 5.48643 5.51879 5.61683 5.63934 5.75384 5.80136 5.80373 5.94032 6.04281 6.06862 6.09409 6.27697 6.40555 6.43320 6.68504 6.82128 7.02220 7.05499 7.17219 7.35133 7.52381 7.73630 7.90212 7.92593 8.32827 8.66916 8.83011 9.45562 10.92742 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.003387 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.300732 B = 8265.223689 C = 8311.273816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.091 3.909 7 H 0.119 0.881 8 N -0.735 5.735 9 C 0.698 3.302 10 O -0.530 6.530 11 N -0.565 5.565 12 C 0.151 3.849 13 C 0.045 3.955 14 C -0.486 4.486 15 H 0.066 0.934 16 C 0.067 3.933 17 N -0.882 5.882 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.200 4.200 23 C -0.210 4.210 24 C 0.519 3.481 25 O -0.473 6.473 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.432 0.568 38 H 0.142 0.858 39 H 0.077 0.923 40 H 0.266 0.734 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -13.428 5.092 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.019 4.019 7 H 0.136 0.864 8 N -0.401 5.401 9 C 0.399 3.601 10 O -0.403 6.403 11 N -0.310 5.310 12 C 0.033 3.967 13 C 0.044 3.956 14 C -0.524 4.524 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.519 5.519 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.238 4.238 23 C -0.247 4.247 24 C 0.305 3.695 25 O -0.343 6.343 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.275 0.725 38 H 0.159 0.841 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.902 -12.767 4.813 19.478 hybrid contribution 0.479 0.292 -0.143 0.579 sum -13.423 -12.475 4.670 18.911 Atomic orbital electron populations 1.21784 0.95997 1.01490 1.01852 1.21535 0.95804 0.96941 1.01995 1.21619 0.95014 0.96811 1.02403 1.21592 0.95769 0.95734 1.02377 1.21807 0.91208 0.98438 1.04251 1.22092 0.96589 0.94855 0.88325 0.86366 1.45592 1.56167 1.17009 1.21303 1.15970 0.79563 0.80616 0.83931 1.91027 1.47503 1.81400 1.20353 1.46896 1.47735 1.17287 1.19057 1.21939 0.90505 0.78146 1.06107 1.19272 0.91994 0.90642 0.93699 1.20491 1.23172 1.02686 1.06076 0.91628 1.25052 0.94873 0.98460 0.95235 1.69719 1.40382 1.37920 1.03897 0.86423 0.79040 0.83431 0.78240 1.20544 1.20921 1.19653 1.23015 0.99979 1.01835 0.98923 1.22902 1.02038 1.07911 0.91861 1.20720 0.77914 0.88692 0.82188 1.90767 1.57742 1.52047 1.33784 0.92759 0.92907 0.92751 0.92046 0.92049 0.91851 0.91749 0.91457 0.91765 0.90636 0.89442 0.72480 0.84096 0.90472 0.92334 0.91419 0.90481 0.90560 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.84 5.21 -26.73 -0.14 -0.98 16 4 C -0.12 -0.84 5.15 -26.73 -0.14 -0.98 16 5 C -0.12 -1.14 4.96 -26.73 -0.13 -1.27 16 6 C 0.09 1.11 3.65 -68.20 -0.25 0.86 16 7 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 8 N -0.73 -9.69 6.06 -59.19 -0.36 -10.05 16 9 C 0.70 13.34 7.13 -88.02 -0.63 12.71 16 10 O -0.53 -12.22 16.64 5.33 0.09 -12.13 16 11 N -0.57 -11.46 1.85 -120.73 -0.22 -11.69 16 12 C 0.15 3.69 4.98 -4.04 -0.02 3.67 16 13 C 0.05 1.16 2.38 -155.65 -0.37 0.79 16 14 C -0.49 -13.42 9.05 -34.44 -0.31 -13.73 16 15 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 16 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 17 N -0.88 -24.53 10.70 55.43 0.59 -23.94 16 18 Si 0.90 20.92 29.55 -169.99 -5.02 15.90 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.20 -4.85 9.63 -26.69 -0.26 -5.11 16 23 C -0.21 -4.85 9.56 -26.69 -0.26 -5.10 16 24 C 0.52 9.20 5.70 -10.55 -0.06 9.14 16 25 O -0.47 -9.53 17.54 5.60 0.10 -9.43 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.43 4.37 8.61 -40.82 -0.35 4.02 16 38 H 0.14 3.81 5.70 -51.93 -0.30 3.52 16 39 H 0.08 1.93 8.02 -51.93 -0.42 1.51 16 40 H 0.27 7.05 8.32 -40.82 -0.34 6.71 16 41 H 0.07 1.63 5.59 -51.93 -0.29 1.34 16 42 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 43 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.06 1.30 5.60 -51.93 -0.29 1.01 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -31.26 355.38 -9.00 -40.26 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.09 Total: 5.52 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.44 Total: 0.20 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.01 Total: -45.67 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.19 Total: -21.56 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.26 -9.00 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348664012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.502 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds