Wall clock time and date at job start Tue Mar 31 2020 07:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46833 * 2 1 4 4 C 1.53002 * 109.47154 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47163 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.53941 * 307.83586 * 6 5 4 8 8 N 1.47318 * 110.59665 * 70.82745 * 6 5 4 9 9 C 1.34525 * 106.61716 * 118.53219 * 8 6 5 10 10 O 1.21540 * 123.77133 * 180.02562 * 9 8 6 11 11 N 1.33797 * 112.46045 * 359.97438 * 9 8 6 12 12 C 1.46501 * 124.17900 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46773 * 269.06917 * 12 11 9 14 14 C 1.50702 * 115.54762 * 186.10031 * 13 12 11 15 15 H 1.07996 * 119.99522 * 144.59223 * 14 13 12 16 16 C 1.37870 * 120.00087 * 324.59866 * 14 13 12 17 17 N 1.31519 * 120.00432 * 351.04585 * 16 14 13 18 18 Si 1.86806 * 119.99864 * 171.05121 * 16 14 13 19 19 H 1.48500 * 109.47084 * 90.00125 * 18 16 14 20 20 H 1.48501 * 109.46829 * 209.99760 * 18 16 14 21 21 H 1.48497 * 109.47072 * 329.99597 * 18 16 14 22 22 C 1.53007 * 117.49920 * 40.43451 * 13 12 11 23 23 C 1.53000 * 117.50066 * 331.77475 * 13 12 11 24 24 C 1.34768 * 111.64357 * 0.02562 * 11 9 8 25 25 O 1.21229 * 127.16080 * 180.02562 * 24 11 9 26 26 H 1.09004 * 109.47366 * 299.99787 * 1 2 3 27 27 H 1.09007 * 109.46797 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47381 * 60.00465 * 1 2 3 29 29 H 1.08999 * 109.47101 * 119.99094 * 2 1 3 30 30 H 1.08994 * 109.47326 * 240.00213 * 2 1 3 31 31 H 1.08999 * 109.46537 * 299.99439 * 3 2 1 32 32 H 1.08993 * 109.47506 * 59.99439 * 3 2 1 33 33 H 1.09001 * 109.46799 * 299.99918 * 4 3 2 34 34 H 1.09004 * 109.47040 * 59.99573 * 4 3 2 35 35 H 1.09001 * 109.47629 * 299.99836 * 5 4 3 36 36 H 1.09004 * 109.47229 * 60.00115 * 5 4 3 37 37 H 0.96998 * 126.69245 * 298.50453 * 8 6 5 38 38 H 1.08999 * 109.47233 * 29.06669 * 12 11 9 39 39 H 1.08990 * 109.46915 * 149.07127 * 12 11 9 40 40 H 0.96999 * 120.00154 * 185.01000 * 17 16 14 41 41 H 1.08999 * 117.49913 * 0.02562 * 22 13 12 42 42 H 1.08998 * 117.49574 * 145.01773 * 22 13 12 43 43 H 1.08997 * 117.49494 * 214.98193 * 23 13 12 44 44 H 1.09001 * 117.49774 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4427 -0.0006 5 6 4.0798 2.8852 -0.0013 6 6 5.6098 2.8853 -0.0013 7 1 5.9923 2.2596 0.8051 8 7 6.1281 2.4319 -1.3036 9 6 6.8397 3.4543 -1.8116 10 8 7.4082 3.4142 -2.8851 11 7 6.8509 4.5206 -1.0034 12 6 7.5469 5.7741 -1.3044 13 6 8.9683 5.7161 -0.7411 14 6 9.7622 6.9925 -0.8478 15 1 10.4540 7.2651 -0.0645 16 6 9.6054 7.8122 -1.9452 17 7 8.9016 7.4016 -2.9776 18 14 10.3926 9.5062 -1.9658 19 1 11.7575 9.4107 -2.5431 20 1 9.5688 10.4248 -2.7921 21 1 10.4773 10.0296 -0.5787 22 6 9.7301 4.3965 -0.8805 23 6 9.2056 4.8371 0.4885 24 6 6.1428 4.2990 0.1216 25 8 5.9678 5.0702 1.0405 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5137 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9565 0.8899 33 1 3.9336 0.9287 0.8891 34 1 3.9329 0.9289 -0.8909 35 1 3.7161 3.3988 -0.8913 36 1 3.7168 3.3993 0.8887 37 1 5.9846 1.5650 -1.7145 38 1 7.5895 5.9158 -2.3843 39 1 7.0095 6.6061 -0.8497 40 1 8.8513 7.9471 -3.7781 41 1 9.2189 3.5698 -1.3738 42 1 10.8056 4.4517 -1.0489 43 1 9.9363 5.1819 1.2201 44 1 8.3490 4.3004 0.8964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348664012.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:40 Heat of formation + Delta-G solvation = -56.589155 kcal Electronic energy + Delta-G solvation = -24404.364544 eV Core-core repulsion = 20936.017304 eV Total energy + Delta-G solvation = -3468.347240 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.47263 -39.58384 -38.79124 -37.63879 -36.70253 -35.12845 -34.24708 -32.89542 -29.49059 -28.73944 -27.50172 -25.76021 -23.92326 -22.92283 -22.36262 -22.08881 -21.65741 -20.58798 -18.91442 -18.69478 -17.89455 -17.32787 -16.81689 -16.73137 -16.31340 -16.06357 -15.66864 -15.35338 -15.21132 -14.89784 -14.35978 -14.27717 -14.02964 -13.92302 -13.67567 -13.48771 -12.85880 -12.79663 -12.75903 -12.54617 -12.40404 -12.16283 -11.97174 -11.87811 -11.82750 -11.72496 -11.61602 -11.29314 -11.11060 -11.00677 -10.85522 -10.52100 -10.32825 -10.06891 -8.14439 -6.27835 0.65272 1.34760 1.43538 1.44218 1.55192 2.07994 2.27874 2.39362 2.93220 3.01078 3.51398 3.59232 3.85968 4.07817 4.14318 4.16310 4.25698 4.34466 4.43203 4.44859 4.52969 4.59825 4.62208 4.78667 4.79558 4.81548 4.87601 4.97194 5.06898 5.09689 5.11311 5.19380 5.24073 5.28783 5.39356 5.42037 5.51954 5.52515 5.58101 5.81123 5.89873 6.25704 6.28296 6.48247 6.72378 7.22918 7.35235 8.86281 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030221 B = 0.003387 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.300732 B = 8265.223689 C = 8311.273816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.107 3.893 7 H 0.158 0.842 8 N -0.703 5.703 9 C 0.694 3.306 10 O -0.578 6.578 11 N -0.577 5.577 12 C 0.169 3.831 13 C 0.014 3.986 14 C -0.513 4.513 15 H 0.060 0.940 16 C 0.023 3.977 17 N -0.906 5.906 18 Si 0.966 3.034 19 H -0.275 1.275 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.195 4.195 23 C -0.186 4.186 24 C 0.509 3.491 25 O -0.500 6.500 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.451 0.549 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.267 0.733 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 -14.990 6.345 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.148 4.148 5 C -0.150 4.150 6 C -0.001 4.001 7 H 0.175 0.825 8 N -0.370 5.370 9 C 0.395 3.605 10 O -0.454 6.454 11 N -0.321 5.321 12 C 0.048 3.952 13 C 0.013 3.987 14 C -0.551 4.551 15 H 0.078 0.922 16 C -0.178 4.178 17 N -0.543 5.543 18 Si 0.791 3.209 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.233 4.233 23 C -0.223 4.223 24 C 0.298 3.702 25 O -0.372 6.372 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.298 0.702 38 H 0.129 0.871 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.796 -14.396 6.098 21.526 hybrid contribution 0.685 0.753 -0.499 1.134 sum -14.111 -13.643 5.598 20.411 Atomic orbital electron populations 1.21801 0.96060 1.01774 1.01702 1.21523 0.95784 0.96472 1.02362 1.21602 0.94867 0.97226 1.02126 1.21573 0.95799 0.93793 1.03651 1.21817 0.88690 1.00408 1.04088 1.22291 0.98185 0.91157 0.88438 0.82487 1.45408 1.54064 1.16279 1.21202 1.16098 0.79853 0.81287 0.83270 1.90995 1.49791 1.82276 1.22321 1.46824 1.48145 1.16614 1.20555 1.21261 0.90318 0.79725 1.03859 1.19420 0.92655 0.90674 0.95963 1.20766 1.23882 1.04129 1.06334 0.92202 1.25810 0.95421 1.01799 0.94753 1.69885 1.41111 1.39037 1.04256 0.85428 0.78208 0.78986 0.78325 1.20056 1.20352 1.19205 1.22901 0.99329 1.01143 0.99965 1.22859 1.02157 1.06222 0.91057 1.21625 0.77003 0.90727 0.80809 1.90750 1.58463 1.53556 1.34474 0.92751 0.92441 0.93106 0.91432 0.91896 0.92561 0.91731 0.89748 0.90928 0.91659 0.88972 0.70196 0.87133 0.92309 0.92321 0.91255 0.91235 0.90105 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.24 5.93 30.60 0.18 -1.06 16 3 C -0.12 -1.34 5.21 30.60 0.16 -1.18 16 4 C -0.11 -1.17 5.15 30.59 0.16 -1.01 16 5 C -0.11 -1.81 4.96 30.59 0.15 -1.66 16 6 C 0.11 2.29 3.65 44.37 0.16 2.45 16 7 H 0.16 2.38 8.14 -2.39 -0.02 2.36 16 8 N -0.70 -16.76 6.06 -459.59 -2.79 -19.54 16 9 C 0.69 26.17 7.13 179.44 1.28 27.45 16 10 O -0.58 -27.03 16.64 -3.84 -0.06 -27.09 16 11 N -0.58 -23.45 1.85 -773.12 -1.43 -24.88 16 12 C 0.17 8.52 4.98 86.38 0.43 8.95 16 13 C 0.01 0.74 2.38 -52.92 -0.13 0.61 16 14 C -0.51 -28.91 9.05 25.60 0.23 -28.68 16 15 H 0.06 3.33 7.83 -2.91 -0.02 3.31 16 16 C 0.02 1.25 5.27 84.65 0.45 1.70 16 17 N -0.91 -51.84 10.70 21.45 0.23 -51.61 16 18 Si 0.97 43.48 29.55 68.60 2.03 45.50 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 C -0.20 -9.56 9.63 30.62 0.30 -9.26 16 23 C -0.19 -8.48 9.56 30.62 0.29 -8.18 16 24 C 0.51 17.46 5.70 87.94 0.50 17.96 16 25 O -0.50 -19.78 17.54 -2.87 -0.05 -19.83 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.68 7.68 -2.38 -0.02 0.66 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.45 7.62 8.61 -92.71 -0.80 6.82 16 38 H 0.11 6.28 5.70 -2.39 -0.01 6.27 16 39 H 0.06 3.08 8.02 -2.39 -0.02 3.06 16 40 H 0.27 14.50 8.32 -92.71 -0.77 13.73 16 41 H 0.07 3.35 5.59 -2.39 -0.01 3.33 16 42 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 44 H 0.07 3.15 5.60 -2.39 -0.01 3.14 16 Total: -1.00 -70.00 355.38 3.00 -67.00 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.20 Total: 23.26 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.88 Total: 7.19 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -3.99 Total: -96.03 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.11 Total: -46.92 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.00 3.00 -67.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348664012.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.415 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds