Wall clock time and date at job start Tue Mar 31 2020 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46841 * 2 1 4 4 C 1.52998 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46984 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47297 * 179.97438 * 5 4 3 7 7 H 1.09007 * 110.53410 * 52.11462 * 6 5 4 8 8 N 1.47314 * 110.60003 * 289.12616 * 6 5 4 9 9 C 1.34526 * 106.61481 * 241.47186 * 8 6 5 10 10 O 1.21544 * 123.76789 * 180.02562 * 9 8 6 11 11 N 1.33793 * 112.46197 * 359.97438 * 9 8 6 12 12 C 1.46500 * 124.17856 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46993 * 263.88671 * 12 11 9 14 14 C 1.50691 * 115.54962 * 269.24807 * 13 12 11 15 15 H 1.08000 * 120.00310 * 116.34175 * 14 13 12 16 16 C 1.37881 * 119.99821 * 296.34097 * 14 13 12 17 17 N 1.31514 * 119.99974 * 164.91618 * 16 14 13 18 18 Si 1.86799 * 120.00096 * 344.90936 * 16 14 13 19 19 H 1.48500 * 109.46641 * 84.54984 * 18 16 14 20 20 H 1.48497 * 109.47121 * 204.54612 * 18 16 14 21 21 H 1.48493 * 109.47249 * 324.55057 * 18 16 14 22 22 C 1.53003 * 117.49747 * 123.53969 * 13 12 11 23 23 C 1.52995 * 117.49660 * 54.91928 * 13 12 11 24 24 C 1.34769 * 111.64170 * 0.02562 * 11 9 8 25 25 O 1.21230 * 127.15547 * 179.97438 * 24 11 9 26 26 H 1.08994 * 109.47423 * 59.99857 * 1 2 3 27 27 H 1.09004 * 109.47114 * 299.99644 * 1 2 3 28 28 H 1.09002 * 109.47034 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47601 * 119.99619 * 2 1 3 30 30 H 1.09004 * 109.47114 * 240.00355 * 2 1 3 31 31 H 1.09004 * 109.46786 * 299.99941 * 3 2 1 32 32 H 1.08998 * 109.47322 * 59.99992 * 3 2 1 33 33 H 1.08994 * 109.47051 * 300.00013 * 4 3 2 34 34 H 1.09004 * 109.47326 * 60.00128 * 4 3 2 35 35 H 1.09003 * 109.47450 * 299.99763 * 5 4 3 36 36 H 1.08998 * 109.47191 * 59.99726 * 5 4 3 37 37 H 0.97002 * 126.69120 * 61.44115 * 8 6 5 38 38 H 1.08998 * 109.47250 * 23.88691 * 12 11 9 39 39 H 1.09001 * 109.46986 * 143.88738 * 12 11 9 40 40 H 0.97000 * 120.00202 * 180.02562 * 17 16 14 41 41 H 1.09007 * 117.49574 * 359.97438 * 22 13 12 42 42 H 1.09000 * 117.49692 * 145.01840 * 22 13 12 43 43 H 1.09008 * 117.49642 * 214.97811 * 23 13 12 44 44 H 1.09003 * 117.50481 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 -0.0013 6 6 5.6098 2.8852 -0.0013 7 1 5.9922 2.2580 -0.8067 8 7 6.1282 2.4340 1.3017 9 6 6.8397 3.4574 1.8079 10 8 7.4090 3.4189 2.8811 11 7 6.8517 4.5219 0.9975 12 6 7.5487 5.7755 1.2957 13 6 6.5640 6.7731 1.9088 14 6 5.8557 7.6728 0.9292 15 1 4.7830 7.6130 0.8192 16 6 6.5771 8.5724 0.1733 17 7 6.0253 9.1407 -0.8765 18 14 8.3383 8.9840 0.6404 19 1 9.2540 7.9673 0.0632 20 1 8.6905 10.3255 0.1098 21 1 8.4705 8.9863 2.1195 22 6 6.9105 7.3555 3.2806 23 6 5.7858 6.3267 3.1482 24 6 6.1433 4.2985 -0.1270 25 8 5.9689 5.0678 -1.0475 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.9336 0.9287 0.8891 34 1 3.9329 0.9289 -0.8909 35 1 3.7161 3.3987 -0.8913 36 1 3.7168 3.3992 0.8887 37 1 5.9841 1.5681 1.7145 38 1 8.3571 5.5828 2.0010 39 1 7.9603 6.1901 0.3755 40 1 6.5330 9.7732 -1.4085 41 1 7.8398 7.0275 3.7464 42 1 6.6263 8.3898 3.4746 43 1 4.7616 6.6841 3.2552 44 1 5.9757 5.3224 3.5271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348664017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:43 Heat of formation + Delta-G solvation = -37.324789 kcal Electronic energy + Delta-G solvation = -24643.273210 eV Core-core repulsion = 21175.761336 eV Total energy + Delta-G solvation = -3467.511874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97214 -38.02678 -37.30595 -36.53226 -35.54304 -33.97479 -32.10451 -31.99341 -28.50462 -27.46592 -25.51907 -24.61799 -22.53983 -21.59524 -21.33155 -21.16066 -20.39502 -18.87416 -17.60788 -16.88206 -16.18589 -16.08107 -15.82191 -15.03337 -14.92872 -14.70043 -14.36415 -14.26393 -13.75956 -13.54400 -13.35620 -13.14309 -12.99190 -12.75406 -12.37909 -12.04364 -11.84855 -11.79580 -11.21589 -11.07045 -11.02552 -10.96714 -10.74073 -10.68195 -10.61825 -10.41000 -10.30456 -9.77740 -9.56823 -9.31338 -9.04355 -8.92218 -8.67212 -8.29787 -6.06783 -4.02821 2.16955 2.66555 3.28321 3.40040 3.42927 3.48234 3.54691 4.27127 4.45588 4.48157 4.67576 4.78753 4.88814 4.91955 5.00596 5.12595 5.23281 5.29995 5.46583 5.52269 5.53665 5.60181 5.71093 5.74557 5.83016 5.86376 5.90263 6.03391 6.06864 6.07538 6.12488 6.15665 6.20645 6.31760 6.53831 6.63338 6.77014 6.98288 7.03076 7.18805 7.57156 7.79990 8.00768 8.53054 8.53803 8.97388 9.57762 11.05328 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.004381 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.689667 B = 6389.701629 C = 6917.075581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.120 4.120 6 C 0.093 3.907 7 H 0.119 0.881 8 N -0.731 5.731 9 C 0.702 3.298 10 O -0.555 6.555 11 N -0.560 5.560 12 C 0.147 3.853 13 C -0.019 4.019 14 C -0.481 4.481 15 H 0.073 0.927 16 C 0.086 3.914 17 N -0.883 5.883 18 Si 0.857 3.143 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.251 1.251 22 C -0.184 4.184 23 C -0.178 4.178 24 C 0.516 3.484 25 O -0.429 6.429 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.432 0.568 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.264 0.736 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -17.989 1.171 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.016 4.016 7 H 0.137 0.863 8 N -0.395 5.395 9 C 0.404 3.596 10 O -0.430 6.430 11 N -0.305 5.305 12 C 0.027 3.973 13 C -0.021 4.021 14 C -0.518 4.518 15 H 0.091 0.909 16 C -0.118 4.118 17 N -0.519 5.519 18 Si 0.684 3.316 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.175 1.175 22 C -0.222 4.222 23 C -0.216 4.216 24 C 0.300 3.700 25 O -0.294 6.294 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.275 0.725 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.252 -17.290 1.034 17.835 hybrid contribution 0.855 -0.052 0.358 0.928 sum -3.398 -17.342 1.393 17.726 Atomic orbital electron populations 1.21784 0.96004 1.01404 1.01953 1.21530 0.95819 0.96993 1.01838 1.21625 0.95008 0.96700 1.02623 1.21581 0.95858 0.95802 1.02069 1.21813 0.90975 0.98193 1.04850 1.22141 0.96974 0.94788 0.87676 0.86338 1.45537 1.55562 1.16875 1.21567 1.15941 0.79595 0.80578 0.83535 1.90953 1.49279 1.82225 1.20570 1.46331 1.49177 1.15270 1.19771 1.21774 0.93754 0.80125 1.01641 1.19734 0.97617 0.97026 0.87673 1.20086 0.94754 1.17925 1.18995 0.90877 1.24851 0.97605 0.95761 0.93554 1.69960 1.38086 1.29135 1.14701 0.87183 0.85883 0.77838 0.80741 1.20262 1.21632 1.17492 1.23088 0.98004 0.98077 1.03081 1.22745 0.96390 0.98003 1.04419 1.20649 0.78406 0.88452 0.82458 1.90914 1.54350 1.50783 1.33343 0.92690 0.92732 0.92980 0.92166 0.92113 0.91616 0.91768 0.91993 0.91581 0.89127 0.90374 0.72456 0.90712 0.89066 0.92657 0.91113 0.89355 0.90031 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.12 -0.99 5.21 -26.73 -0.14 -1.13 16 4 C -0.12 -0.92 5.15 -26.73 -0.14 -1.06 16 5 C -0.12 -1.32 4.96 -26.73 -0.13 -1.46 16 6 C 0.09 1.16 3.64 -68.20 -0.25 0.91 16 7 H 0.12 1.14 8.14 -51.92 -0.42 0.72 16 8 N -0.73 -9.00 6.06 -59.19 -0.36 -9.35 16 9 C 0.70 12.17 7.86 -88.02 -0.69 11.48 16 10 O -0.56 -11.08 16.57 5.33 0.09 -11.00 16 11 N -0.56 -10.85 2.42 -120.73 -0.29 -11.14 16 12 C 0.15 3.24 4.98 -4.04 -0.02 3.22 16 13 C -0.02 -0.44 1.08 -155.66 -0.17 -0.61 16 14 C -0.48 -13.39 9.33 -34.44 -0.32 -13.71 16 15 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 16 C 0.09 2.46 5.32 -17.82 -0.09 2.36 16 17 N -0.88 -26.89 13.96 55.43 0.77 -26.12 16 18 Si 0.86 21.10 25.58 -169.99 -4.35 16.76 16 19 H -0.28 -6.62 6.86 56.52 0.39 -6.24 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.25 -5.85 5.99 56.52 0.34 -5.51 16 22 C -0.18 -4.02 7.89 -26.73 -0.21 -4.23 16 23 C -0.18 -3.83 9.65 -26.73 -0.26 -4.09 16 24 C 0.52 9.54 7.65 -10.56 -0.08 9.46 16 25 O -0.43 -9.74 17.84 5.60 0.10 -9.64 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.44 7.69 -51.93 -0.40 0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.43 3.97 8.62 -40.82 -0.35 3.61 16 38 H 0.07 1.55 7.46 -51.93 -0.39 1.16 16 39 H 0.09 2.15 6.15 -51.93 -0.32 1.83 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 1.43 8.03 -51.92 -0.42 1.02 16 42 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 43 H 0.08 1.75 8.14 -51.92 -0.42 1.32 16 44 H 0.08 1.60 6.55 -51.93 -0.34 1.26 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -33.08 357.66 -8.29 -41.36 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.35 Total: 4.35 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.29 Total: -0.60 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.12 Total: -46.62 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.19 Total: -20.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.35 Total: 16.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.08 -8.29 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348664017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.037 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds