Wall clock time and date at job start Tue Mar 31 2020 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46841 * 2 1 4 4 C 1.52998 * 109.47001 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46984 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47297 * 179.97438 * 5 4 3 7 7 H 1.09007 * 110.53410 * 52.11462 * 6 5 4 8 8 N 1.47314 * 110.60003 * 289.12616 * 6 5 4 9 9 C 1.34526 * 106.61481 * 241.47186 * 8 6 5 10 10 O 1.21544 * 123.76789 * 180.02562 * 9 8 6 11 11 N 1.33793 * 112.46197 * 359.97438 * 9 8 6 12 12 C 1.46500 * 124.17856 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46993 * 263.88671 * 12 11 9 14 14 C 1.50691 * 115.54962 * 269.24807 * 13 12 11 15 15 H 1.08000 * 120.00310 * 116.34175 * 14 13 12 16 16 C 1.37881 * 119.99821 * 296.34097 * 14 13 12 17 17 N 1.31514 * 119.99974 * 164.91618 * 16 14 13 18 18 Si 1.86799 * 120.00096 * 344.90936 * 16 14 13 19 19 H 1.48500 * 109.46641 * 84.54984 * 18 16 14 20 20 H 1.48497 * 109.47121 * 204.54612 * 18 16 14 21 21 H 1.48493 * 109.47249 * 324.55057 * 18 16 14 22 22 C 1.53003 * 117.49747 * 123.53969 * 13 12 11 23 23 C 1.52995 * 117.49660 * 54.91928 * 13 12 11 24 24 C 1.34769 * 111.64170 * 0.02562 * 11 9 8 25 25 O 1.21230 * 127.15547 * 179.97438 * 24 11 9 26 26 H 1.08994 * 109.47423 * 59.99857 * 1 2 3 27 27 H 1.09004 * 109.47114 * 299.99644 * 1 2 3 28 28 H 1.09002 * 109.47034 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47601 * 119.99619 * 2 1 3 30 30 H 1.09004 * 109.47114 * 240.00355 * 2 1 3 31 31 H 1.09004 * 109.46786 * 299.99941 * 3 2 1 32 32 H 1.08998 * 109.47322 * 59.99992 * 3 2 1 33 33 H 1.08994 * 109.47051 * 300.00013 * 4 3 2 34 34 H 1.09004 * 109.47326 * 60.00128 * 4 3 2 35 35 H 1.09003 * 109.47450 * 299.99763 * 5 4 3 36 36 H 1.08998 * 109.47191 * 59.99726 * 5 4 3 37 37 H 0.97002 * 126.69120 * 61.44115 * 8 6 5 38 38 H 1.08998 * 109.47250 * 23.88691 * 12 11 9 39 39 H 1.09001 * 109.46986 * 143.88738 * 12 11 9 40 40 H 0.97000 * 120.00202 * 180.02562 * 17 16 14 41 41 H 1.09007 * 117.49574 * 359.97438 * 22 13 12 42 42 H 1.09000 * 117.49692 * 145.01840 * 22 13 12 43 43 H 1.09008 * 117.49642 * 214.97811 * 23 13 12 44 44 H 1.09003 * 117.50481 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 -0.0013 6 6 5.6098 2.8852 -0.0013 7 1 5.9922 2.2580 -0.8067 8 7 6.1282 2.4340 1.3017 9 6 6.8397 3.4574 1.8079 10 8 7.4090 3.4189 2.8811 11 7 6.8517 4.5219 0.9975 12 6 7.5487 5.7755 1.2957 13 6 6.5640 6.7731 1.9088 14 6 5.8557 7.6728 0.9292 15 1 4.7830 7.6130 0.8192 16 6 6.5771 8.5724 0.1733 17 7 6.0253 9.1407 -0.8765 18 14 8.3383 8.9840 0.6404 19 1 9.2540 7.9673 0.0632 20 1 8.6905 10.3255 0.1098 21 1 8.4705 8.9863 2.1195 22 6 6.9105 7.3555 3.2806 23 6 5.7858 6.3267 3.1482 24 6 6.1433 4.2985 -0.1270 25 8 5.9689 5.0678 -1.0475 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5137 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.9336 0.9287 0.8891 34 1 3.9329 0.9289 -0.8909 35 1 3.7161 3.3987 -0.8913 36 1 3.7168 3.3992 0.8887 37 1 5.9841 1.5681 1.7145 38 1 8.3571 5.5828 2.0010 39 1 7.9603 6.1901 0.3755 40 1 6.5330 9.7732 -1.4085 41 1 7.8398 7.0275 3.7464 42 1 6.6263 8.3898 3.4746 43 1 4.7616 6.6841 3.2552 44 1 5.9757 5.3224 3.5271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348664017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:43 Heat of formation + Delta-G solvation = -59.483952 kcal Electronic energy + Delta-G solvation = -24644.234103 eV Core-core repulsion = 21175.761336 eV Total energy + Delta-G solvation = -3468.472768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.35851 -39.52932 -38.91566 -37.68721 -36.71277 -35.27240 -34.25147 -32.91972 -29.55103 -29.01527 -27.46632 -25.74745 -23.72892 -23.31539 -22.25176 -22.12043 -21.63020 -20.69037 -19.03406 -18.49254 -17.78697 -17.43115 -16.85498 -16.65033 -16.39302 -16.21439 -15.63497 -15.28275 -15.09691 -14.95664 -14.81941 -14.45819 -14.24916 -13.98220 -13.73273 -13.59214 -13.01775 -12.81736 -12.59464 -12.55686 -12.35401 -12.20807 -11.95049 -11.85308 -11.77555 -11.72709 -11.62220 -11.30549 -11.06988 -10.90594 -10.76101 -10.58125 -10.37485 -10.31803 -8.27722 -6.27954 0.75403 1.27824 1.33437 1.41056 1.52572 2.07200 2.27989 2.38194 2.92292 3.05227 3.32364 3.59279 3.81106 3.96457 4.08727 4.12261 4.19255 4.26861 4.32665 4.37596 4.43365 4.50884 4.54890 4.66487 4.78594 4.80148 4.80752 4.91349 4.97172 5.01622 5.08366 5.11611 5.19053 5.23955 5.27378 5.38756 5.43866 5.50913 5.57291 5.68679 5.89976 6.20430 6.30047 6.60401 6.71876 7.20570 7.35952 8.88532 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.004381 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.689667 B = 6389.701629 C = 6917.075581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.106 4.106 5 C -0.115 4.115 6 C 0.112 3.888 7 H 0.163 0.837 8 N -0.699 5.699 9 C 0.701 3.299 10 O -0.579 6.579 11 N -0.572 5.572 12 C 0.152 3.848 13 C -0.039 4.039 14 C -0.477 4.477 15 H 0.021 0.979 16 C 0.031 3.969 17 N -0.936 5.936 18 Si 0.917 3.083 19 H -0.265 1.265 20 H -0.293 1.293 21 H -0.224 1.224 22 C -0.171 4.171 23 C -0.164 4.164 24 C 0.504 3.496 25 O -0.485 6.485 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.452 0.548 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.264 0.736 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 -20.821 2.537 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.162 4.162 4 C -0.143 4.143 5 C -0.154 4.154 6 C 0.004 3.996 7 H 0.180 0.820 8 N -0.365 5.365 9 C 0.402 3.598 10 O -0.456 6.456 11 N -0.316 5.316 12 C 0.030 3.970 13 C -0.041 4.041 14 C -0.515 4.515 15 H 0.039 0.961 16 C -0.168 4.168 17 N -0.574 5.574 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.219 1.219 21 H -0.147 1.147 22 C -0.209 4.209 23 C -0.201 4.201 24 C 0.291 3.709 25 O -0.354 6.354 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.300 0.700 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.037 -20.202 2.438 20.574 hybrid contribution 0.326 0.798 -0.083 0.866 sum -2.711 -19.405 2.355 19.734 Atomic orbital electron populations 1.21808 0.96208 1.01840 1.01571 1.21506 0.95671 0.96088 1.02570 1.21625 0.95273 0.97455 1.01802 1.21550 0.95517 0.93356 1.03893 1.21794 0.89708 1.00415 1.03436 1.22219 0.97551 0.91126 0.88703 0.81976 1.45353 1.53639 1.16491 1.21029 1.15972 0.79980 0.80839 0.83028 1.90939 1.50567 1.82658 1.21481 1.46430 1.49271 1.15255 1.20667 1.21449 0.93804 0.80960 1.00747 1.19591 0.99143 0.97713 0.87660 1.20114 0.92651 1.18716 1.19988 0.96057 1.25673 1.02332 0.95555 0.93191 1.70111 1.40284 1.30593 1.16449 0.86223 0.80381 0.77450 0.81966 1.19053 1.21902 1.14665 1.23131 0.99015 0.98021 1.00761 1.22682 0.96155 0.98604 1.02638 1.21678 0.77443 0.90456 0.81304 1.90886 1.56228 1.53122 1.35178 0.93053 0.93212 0.92137 0.91456 0.91270 0.92400 0.92833 0.90281 0.89534 0.90312 0.92310 0.69972 0.88949 0.91312 0.92720 0.88504 0.89726 0.90660 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.42 5.93 30.60 0.18 -1.23 16 3 C -0.12 -1.79 5.21 30.60 0.16 -1.63 16 4 C -0.11 -1.35 5.15 30.59 0.16 -1.19 16 5 C -0.11 -2.36 4.96 30.59 0.15 -2.21 16 6 C 0.11 2.50 3.64 44.37 0.16 2.67 16 7 H 0.16 2.41 8.14 -2.38 -0.02 2.39 16 8 N -0.70 -14.87 6.06 -459.59 -2.79 -17.65 16 9 C 0.70 22.66 7.86 179.44 1.41 24.07 16 10 O -0.58 -21.58 16.57 -3.85 -0.06 -21.64 16 11 N -0.57 -21.63 2.42 -773.12 -1.87 -23.50 16 12 C 0.15 6.56 4.98 86.38 0.43 6.99 16 13 C -0.04 -1.85 1.08 -52.93 -0.06 -1.90 16 14 C -0.48 -27.63 9.33 25.60 0.24 -27.39 16 15 H 0.02 1.41 8.06 -2.91 -0.02 1.38 16 16 C 0.03 1.85 5.32 84.66 0.45 2.30 16 17 N -0.94 -59.70 13.96 21.45 0.30 -59.41 16 18 Si 0.92 43.76 25.58 68.60 1.75 45.51 16 19 H -0.27 -12.12 6.86 99.48 0.68 -11.43 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.22 -9.63 5.99 99.48 0.60 -9.03 16 22 C -0.17 -7.10 7.89 30.59 0.24 -6.86 16 23 C -0.16 -6.86 9.65 30.59 0.30 -6.57 16 24 C 0.50 18.57 7.65 87.94 0.67 19.24 16 25 O -0.48 -22.94 17.84 -2.87 -0.05 -22.99 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.78 7.69 -2.39 -0.02 0.76 16 34 H 0.09 0.82 8.14 -2.38 -0.02 0.81 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.45 6.26 8.62 -92.71 -0.80 5.46 16 38 H 0.09 3.62 7.46 -2.39 -0.02 3.60 16 39 H 0.07 3.25 6.15 -2.39 -0.01 3.23 16 40 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 41 H 0.10 3.55 8.03 -2.38 -0.02 3.53 16 42 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.07 3.23 8.14 -2.38 -0.02 3.21 16 44 H 0.09 3.52 6.55 -2.39 -0.02 3.50 16 Total: -1.00 -76.16 357.66 2.55 -73.61 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.05 Total: 21.03 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.21 Total: 5.04 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -4.36 Total: -100.56 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.12 Total: -44.64 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.75 Total: 45.51 kcal Total: -76.16 2.55 -73.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348664017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.130 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds