Wall clock time and date at job start Tue Mar 31 2020 07:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47423 * 2 1 4 4 C 1.53009 * 109.47067 * 240.00253 * 2 1 3 5 5 C 1.50696 * 109.47045 * 59.99937 * 4 2 1 6 6 H 1.07996 * 120.00069 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00030 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99866 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00336 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47077 * 60.00078 * 9 7 5 11 11 H 1.48490 * 109.47351 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47086 * 300.00135 * 9 7 5 13 13 C 1.53003 * 109.47515 * 120.00366 * 2 1 3 14 14 N 1.46500 * 109.46707 * 299.99928 * 13 2 1 15 15 C 1.35014 * 124.17937 * 89.99786 * 14 13 2 16 16 O 1.21235 * 127.17686 * 2.36862 * 15 14 13 17 17 C 1.51205 * 105.63197 * 182.62520 * 15 14 13 18 18 H 1.09007 * 111.55354 * 112.99155 * 17 15 14 19 19 C 1.53169 * 110.80747 * 238.79264 * 17 15 14 20 20 C 1.53190 * 108.70550 * 164.82679 * 19 17 15 21 21 C 1.52889 * 110.51464 * 296.62919 * 20 19 17 22 22 C 1.53658 * 109.69676 * 62.31453 * 21 20 19 23 23 N 1.46514 * 107.36164 * 308.94665 * 22 21 20 24 24 C 1.33525 * 129.69657 * 233.40598 * 23 22 21 25 25 O 1.21531 * 124.00447 * 349.24732 * 24 23 22 26 26 H 1.08994 * 109.47063 * 299.99665 * 1 2 3 27 27 H 1.08999 * 109.46971 * 60.00043 * 1 2 3 28 28 H 1.09005 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47901 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47550 * 300.00301 * 3 2 1 31 31 H 1.09002 * 109.47253 * 59.99785 * 3 2 1 32 32 H 1.09001 * 109.47326 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46647 * 299.99912 * 4 2 1 34 34 H 0.97000 * 119.99915 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47062 * 179.97438 * 13 2 1 36 36 H 1.09005 * 109.46606 * 59.99466 * 13 2 1 37 37 H 1.09002 * 109.59949 * 284.59147 * 19 17 15 38 38 H 1.09004 * 109.59700 * 44.90112 * 19 17 15 39 39 H 1.08990 * 109.27043 * 56.89499 * 20 19 17 40 40 H 1.09002 * 109.26368 * 176.36682 * 20 19 17 41 41 H 1.09002 * 109.43136 * 182.38310 * 21 20 19 42 42 H 1.08997 * 109.43484 * 302.24727 * 21 20 19 43 43 H 1.09002 * 109.87683 * 189.47966 * 22 21 20 44 44 H 1.09000 * 109.87395 * 68.41157 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2470 0.3981 -5.2572 10 1 1.7420 1.7982 -5.2577 11 1 1.7411 -0.3025 -6.4697 12 1 -0.2380 0.3980 -5.2567 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 0.3870 -0.3180 3.0647 16 8 -0.4028 -1.1900 2.7718 17 6 0.2701 0.6788 4.1956 18 1 -0.5544 1.3732 4.0337 19 6 0.1664 -0.0388 5.5448 20 6 0.4317 0.9750 6.6622 21 6 1.8577 1.5180 6.5655 22 6 2.0394 2.2618 5.2332 23 7 1.5779 1.3686 4.1674 24 6 2.2066 0.9656 3.0605 25 8 3.2488 1.4442 2.6583 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2492 33 1 1.6766 -1.7489 -1.2493 34 1 2.8601 -1.8832 -4.7338 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 -0.8334 -0.4572 5.6606 38 1 0.9051 -0.8391 5.5910 39 1 -0.2742 1.8007 6.5738 40 1 0.2968 0.4889 7.6284 41 1 2.0411 2.2045 7.3920 42 1 2.5652 0.6906 6.6183 43 1 3.0918 2.5037 5.0844 44 1 1.4448 3.1753 5.2347 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348957726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:58 Heat of formation + Delta-G solvation = -55.708829 kcal Electronic energy + Delta-G solvation = -25289.538611 eV Core-core repulsion = 21821.229545 eV Total energy + Delta-G solvation = -3468.309066 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.51748 -38.52681 -38.13302 -36.50044 -35.24873 -32.96830 -32.17979 -31.53858 -27.27071 -26.71189 -26.45416 -26.18262 -24.01441 -22.79358 -22.47323 -20.89897 -19.95717 -18.14080 -17.23213 -17.03385 -16.39779 -16.08253 -15.55893 -15.23320 -14.81900 -14.72206 -14.37344 -14.28262 -13.83730 -13.68272 -13.51591 -13.26128 -12.84888 -12.64551 -12.08813 -12.00312 -11.77777 -11.59218 -11.35454 -11.10116 -10.98880 -10.92085 -10.89757 -10.80548 -10.57444 -10.50525 -10.23244 -9.92356 -9.70615 -9.57914 -9.08168 -9.03879 -8.72662 -8.30402 -5.95111 -3.95454 1.76674 2.20129 3.02039 3.19317 3.36697 3.41047 3.43490 3.97336 4.20041 4.40887 4.50170 4.58731 4.62992 4.76160 4.93415 5.17333 5.26956 5.36455 5.40723 5.43260 5.49037 5.58305 5.60510 5.61751 5.71595 5.84490 5.88696 5.90507 6.18331 6.24151 6.40526 6.49329 6.54010 6.76967 6.85781 7.11961 7.19855 7.22397 7.31044 7.54458 7.67270 7.81410 8.03505 8.26342 8.47009 9.08286 9.67095 11.16526 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.003914 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.317893 B = 7152.308986 C = 7468.821818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 C -0.117 4.117 4 C 0.038 3.962 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.126 3.874 14 N -0.569 5.569 15 C 0.524 3.476 16 O -0.465 6.465 17 C 0.087 3.913 18 H 0.127 0.873 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.140 4.140 22 C 0.151 3.849 23 N -0.628 5.628 24 C 0.705 3.295 25 O -0.535 6.535 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 5.826 23.302 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.076 4.076 3 C -0.174 4.174 4 C 0.001 3.999 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.314 5.314 15 C 0.310 3.690 16 O -0.335 6.335 17 C -0.020 4.020 18 H 0.144 0.856 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.178 4.178 22 C 0.030 3.970 23 N -0.368 5.368 24 C 0.408 3.592 25 O -0.408 6.408 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.881 5.555 22.774 23.761 hybrid contribution -0.334 0.429 -0.994 1.133 sum -4.215 5.984 21.780 22.977 Atomic orbital electron populations 1.21724 0.95142 1.01184 0.99734 1.21038 0.95599 0.96337 0.94651 1.21691 1.00785 0.95342 0.99624 1.19078 0.96310 0.95108 0.89438 1.21136 1.31036 1.11995 0.90486 0.92377 1.24994 0.95333 0.95095 0.99012 1.69952 1.37078 1.23079 1.23480 0.86703 0.79152 0.79804 0.82619 1.20318 1.21391 1.20337 1.22095 1.00315 0.95781 0.81223 1.46691 1.21815 1.34038 1.28815 1.20649 0.80998 0.84096 0.83221 1.90797 1.43634 1.31601 1.67478 1.22401 0.88938 0.94471 0.96237 0.85573 1.21764 1.03864 0.98219 0.91445 1.21465 0.96818 0.98812 0.98392 1.22067 0.97619 1.01047 0.97074 1.21508 1.01267 0.90793 0.83420 1.47624 1.17196 1.49106 1.22872 1.15611 0.83525 0.79832 0.80257 1.90985 1.22664 1.58983 1.68126 0.96109 0.91653 0.93063 0.92938 0.92050 0.95757 0.96269 0.96360 0.93038 0.89169 0.89247 0.89384 0.90782 0.91250 0.90884 0.90060 0.91191 0.88700 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 7.30 37.16 0.27 -2.18 16 2 C -0.08 -1.58 0.60 -154.51 -0.09 -1.68 16 3 C -0.12 -2.45 7.04 37.15 0.26 -2.19 16 4 C 0.04 0.98 4.04 -27.88 -0.11 0.86 16 5 C -0.51 -14.10 7.65 -34.44 -0.26 -14.37 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.13 2.32 4.74 -4.04 -0.02 2.30 16 14 N -0.57 -9.20 2.14 -121.00 -0.26 -9.46 16 15 C 0.52 7.62 5.90 -10.63 -0.06 7.56 16 16 O -0.47 -7.86 17.03 5.60 0.10 -7.77 16 17 C 0.09 0.90 3.92 -67.99 -0.27 0.63 16 18 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 19 C -0.11 -0.88 5.52 -26.55 -0.15 -1.02 16 20 C -0.12 -0.63 5.77 -26.69 -0.15 -0.79 16 21 C -0.14 -0.80 6.09 -26.45 -0.16 -0.96 16 22 C 0.15 1.21 7.01 -3.69 -0.03 1.18 16 23 N -0.63 -7.19 3.02 -171.86 -0.52 -7.71 16 24 C 0.71 11.09 6.87 -88.58 -0.61 10.48 16 25 O -0.53 -10.09 15.90 5.34 0.08 -10.00 16 26 H 0.02 0.37 6.23 -51.93 -0.32 0.05 16 27 H 0.06 1.40 6.62 -51.93 -0.34 1.06 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 1.14 8.06 -51.93 -0.42 0.73 16 30 H 0.06 1.35 6.62 -51.93 -0.34 1.00 16 31 H 0.02 0.47 6.12 -51.93 -0.32 0.15 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.09 1.68 7.91 -51.93 -0.41 1.27 16 36 H 0.09 1.62 7.99 -51.93 -0.41 1.20 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.82 8.00 -51.93 -0.42 0.41 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -32.94 341.17 -8.29 -41.23 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -7.07 Total: -3.40 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.48 Total: 1.34 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.04 Total: -43.40 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.18 Total: -17.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.94 -8.29 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348957726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.480 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds