Wall clock time and date at job start Tue Mar 31 2020 07:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47423 * 2 1 4 4 C 1.53009 * 109.47067 * 240.00253 * 2 1 3 5 5 C 1.50696 * 109.47045 * 59.99937 * 4 2 1 6 6 H 1.07996 * 120.00069 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00030 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99866 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00336 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47077 * 60.00078 * 9 7 5 11 11 H 1.48490 * 109.47351 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47086 * 300.00135 * 9 7 5 13 13 C 1.53003 * 109.47515 * 120.00366 * 2 1 3 14 14 N 1.46500 * 109.46707 * 299.99928 * 13 2 1 15 15 C 1.35014 * 124.17937 * 89.99786 * 14 13 2 16 16 O 1.21235 * 127.17686 * 2.36862 * 15 14 13 17 17 C 1.51205 * 105.63197 * 182.62520 * 15 14 13 18 18 H 1.09007 * 111.55354 * 112.99155 * 17 15 14 19 19 C 1.53169 * 110.80747 * 238.79264 * 17 15 14 20 20 C 1.53190 * 108.70550 * 164.82679 * 19 17 15 21 21 C 1.52889 * 110.51464 * 296.62919 * 20 19 17 22 22 C 1.53658 * 109.69676 * 62.31453 * 21 20 19 23 23 N 1.46514 * 107.36164 * 308.94665 * 22 21 20 24 24 C 1.33525 * 129.69657 * 233.40598 * 23 22 21 25 25 O 1.21531 * 124.00447 * 349.24732 * 24 23 22 26 26 H 1.08994 * 109.47063 * 299.99665 * 1 2 3 27 27 H 1.08999 * 109.46971 * 60.00043 * 1 2 3 28 28 H 1.09005 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47901 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47550 * 300.00301 * 3 2 1 31 31 H 1.09002 * 109.47253 * 59.99785 * 3 2 1 32 32 H 1.09001 * 109.47326 * 180.02562 * 4 2 1 33 33 H 1.09002 * 109.46647 * 299.99912 * 4 2 1 34 34 H 0.97000 * 119.99915 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47062 * 179.97438 * 13 2 1 36 36 H 1.09005 * 109.46606 * 59.99466 * 13 2 1 37 37 H 1.09002 * 109.59949 * 284.59147 * 19 17 15 38 38 H 1.09004 * 109.59700 * 44.90112 * 19 17 15 39 39 H 1.08990 * 109.27043 * 56.89499 * 20 19 17 40 40 H 1.09002 * 109.26368 * 176.36682 * 20 19 17 41 41 H 1.09002 * 109.43136 * 182.38310 * 21 20 19 42 42 H 1.08997 * 109.43484 * 302.24727 * 21 20 19 43 43 H 1.09002 * 109.87683 * 189.47966 * 22 21 20 44 44 H 1.09000 * 109.87395 * 68.41157 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2470 0.3981 -5.2572 10 1 1.7420 1.7982 -5.2577 11 1 1.7411 -0.3025 -6.4697 12 1 -0.2380 0.3980 -5.2567 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 0.3870 -0.3180 3.0647 16 8 -0.4028 -1.1900 2.7718 17 6 0.2701 0.6788 4.1956 18 1 -0.5544 1.3732 4.0337 19 6 0.1664 -0.0388 5.5448 20 6 0.4317 0.9750 6.6622 21 6 1.8577 1.5180 6.5655 22 6 2.0394 2.2618 5.2332 23 7 1.5779 1.3686 4.1674 24 6 2.2066 0.9656 3.0605 25 8 3.2488 1.4442 2.6583 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2492 33 1 1.6766 -1.7489 -1.2493 34 1 2.8601 -1.8832 -4.7338 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 -0.8334 -0.4572 5.6606 38 1 0.9051 -0.8391 5.5910 39 1 -0.2742 1.8007 6.5738 40 1 0.2968 0.4889 7.6284 41 1 2.0411 2.2045 7.3920 42 1 2.5652 0.6906 6.6183 43 1 3.0918 2.5037 5.0844 44 1 1.4448 3.1753 5.2347 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348957726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:57 Heat of formation + Delta-G solvation = -75.588307 kcal Electronic energy + Delta-G solvation = -25290.400650 eV Core-core repulsion = 21821.229545 eV Total energy + Delta-G solvation = -3469.171105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.65209 -39.72653 -39.30488 -37.93383 -36.48920 -34.62433 -33.46741 -32.44171 -29.19144 -28.25189 -28.13455 -27.10268 -25.41683 -24.20986 -23.48587 -21.85962 -20.84332 -19.80794 -18.45016 -18.35741 -18.13189 -17.35659 -16.72348 -16.51542 -16.21141 -15.80617 -15.52714 -15.32070 -15.16494 -14.85279 -14.74441 -14.49127 -14.17503 -14.01494 -13.69764 -13.57801 -12.83554 -12.81536 -12.71498 -12.64361 -12.60939 -12.40217 -12.17825 -12.15706 -12.01017 -11.75060 -11.54632 -11.51803 -11.37135 -11.09048 -10.98629 -10.52384 -10.50977 -9.90253 -8.15967 -6.23605 0.61707 1.10368 1.40134 1.42607 1.49937 1.93445 2.06573 2.42833 2.97937 3.17875 3.48265 3.80371 3.87938 3.93162 4.01895 4.04876 4.08853 4.12454 4.32867 4.38895 4.49230 4.63901 4.65136 4.66486 4.70658 4.80724 4.87379 4.99267 4.99538 5.05210 5.09951 5.20888 5.22998 5.32011 5.37864 5.39004 5.44050 5.49233 5.56775 5.73125 5.85154 6.15241 6.28193 6.38197 6.88655 7.07431 7.43346 8.96230 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.003914 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.317893 B = 7152.308986 C = 7468.821818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 C -0.102 4.102 4 C 0.046 3.954 5 C -0.519 4.519 6 H 0.064 0.936 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.134 3.866 14 N -0.577 5.577 15 C 0.517 3.483 16 O -0.493 6.493 17 C 0.096 3.904 18 H 0.158 0.842 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.133 4.133 22 C 0.141 3.859 23 N -0.615 5.615 24 C 0.697 3.303 25 O -0.575 6.575 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.040 0.960 32 H -0.009 1.009 33 H -0.006 1.006 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 7.735 25.518 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.071 4.071 3 C -0.159 4.159 4 C 0.008 3.992 5 C -0.557 4.557 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.013 3.987 14 N -0.321 5.321 15 C 0.306 3.694 16 O -0.364 6.364 17 C -0.010 4.010 18 H 0.175 0.825 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.171 4.171 22 C 0.022 3.978 23 N -0.354 5.354 24 C 0.400 3.600 25 O -0.452 6.452 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.009 0.991 33 H 0.012 0.988 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.802 7.490 25.059 26.790 hybrid contribution 0.272 -0.191 -1.608 1.642 sum -5.530 7.299 23.451 25.175 Atomic orbital electron populations 1.21572 0.94152 1.00703 1.00098 1.20866 0.96221 0.96144 0.93872 1.21514 0.99629 0.95082 0.99693 1.18907 0.94440 0.94266 0.91547 1.21497 1.30759 1.12106 0.91352 0.91779 1.25892 0.95542 0.95848 1.02479 1.70093 1.38468 1.24713 1.24264 0.85611 0.78954 0.78730 0.78441 1.19426 1.21104 1.19242 1.21691 0.99775 0.95656 0.81593 1.46687 1.22804 1.34369 1.28267 1.21429 0.79807 0.84344 0.83867 1.90783 1.44224 1.32898 1.68476 1.22644 0.88933 0.93753 0.95682 0.82539 1.21834 1.04337 0.98367 0.90426 1.21480 0.96676 0.98748 0.97987 1.22056 0.97778 1.00959 0.96341 1.21912 1.01168 0.91467 0.83264 1.47851 1.17079 1.48592 1.21834 1.15790 0.83261 0.79709 0.81244 1.90956 1.24426 1.60331 1.69437 0.93976 0.92836 0.93957 0.94525 0.93211 0.94134 0.99062 0.98763 0.92990 0.90071 0.89390 0.87992 0.92205 0.89398 0.89147 0.87319 0.92524 0.89852 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 7.30 71.98 0.53 -3.87 16 2 C -0.07 -3.03 0.60 -52.18 -0.03 -3.06 16 3 C -0.10 -4.33 7.04 71.98 0.51 -3.82 16 4 C 0.05 2.46 4.04 29.85 0.12 2.58 16 5 C -0.52 -29.45 7.65 25.60 0.20 -29.25 16 6 H 0.06 3.50 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 8 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 9 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.13 5.14 4.74 86.38 0.41 5.55 16 14 N -0.58 -18.60 2.14 -773.62 -1.66 -20.26 16 15 C 0.52 14.44 5.90 87.78 0.52 14.95 16 16 O -0.49 -16.27 17.03 -2.89 -0.05 -16.32 16 17 C 0.10 1.70 3.92 44.20 0.17 1.88 16 18 H 0.16 1.98 8.14 -2.38 -0.02 1.96 16 19 C -0.11 -1.34 5.52 30.71 0.17 -1.17 16 20 C -0.11 -0.69 5.77 30.62 0.18 -0.52 16 21 C -0.13 -1.04 6.09 30.78 0.19 -0.85 16 22 C 0.14 1.84 7.01 86.60 0.61 2.45 16 23 N -0.61 -12.76 3.02 -816.62 -2.47 -15.23 16 24 C 0.70 21.58 6.87 179.64 1.23 22.82 16 25 O -0.58 -21.99 15.90 -3.81 -0.06 -22.05 16 26 H 0.04 1.50 6.23 -2.39 -0.01 1.49 16 27 H 0.05 2.28 6.62 -2.39 -0.02 2.27 16 28 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.04 1.64 8.06 -2.39 -0.02 1.62 16 30 H 0.05 2.19 6.62 -2.38 -0.02 2.18 16 31 H 0.04 1.56 6.12 -2.39 -0.01 1.55 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.36 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.08 3.21 7.91 -2.39 -0.02 3.19 16 36 H 0.09 3.34 7.99 -2.38 -0.02 3.32 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.06 0.91 8.08 -2.38 -0.02 0.89 16 39 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -73.85 341.17 4.31 -69.54 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.98 Total: 6.45 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 5.25 Total: 8.12 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -3.84 Total: -92.94 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.11 Total: -38.37 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.85 4.31 -69.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348957726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.051 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds