Wall clock time and date at job start Tue Mar 31 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47168 * 2 1 4 4 C 1.52993 * 109.47327 * 239.99691 * 2 1 3 5 5 C 1.50707 * 109.47226 * 60.00319 * 4 2 1 6 6 H 1.08000 * 119.99144 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00295 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99890 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00159 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47119 * 89.99708 * 9 7 5 11 11 H 1.48500 * 109.47091 * 210.00070 * 9 7 5 12 12 H 1.48502 * 109.46951 * 329.99579 * 9 7 5 13 13 C 1.52999 * 109.46944 * 119.99643 * 2 1 3 14 14 N 1.46499 * 109.47598 * 300.00017 * 13 2 1 15 15 C 1.33793 * 124.17522 * 89.97243 * 14 13 2 16 16 O 1.21541 * 123.77376 * 0.03910 * 15 14 13 17 17 N 1.34530 * 112.45749 * 180.02562 * 15 14 13 18 18 C 1.47317 * 106.61699 * 359.97438 * 17 15 14 19 19 C 1.52999 * 110.59379 * 118.68653 * 18 17 15 20 20 C 1.53003 * 110.59766 * 241.47513 * 18 17 15 21 21 C 1.53000 * 117.49792 * 296.47030 * 20 18 17 22 22 C 1.53002 * 60.02940 * 107.48056 * 21 20 18 23 23 C 1.35114 * 124.13831 * 270.12261 * 14 13 2 24 24 O 1.21233 * 127.33615 * 359.96792 * 23 14 13 25 25 H 1.09002 * 109.47145 * 300.00292 * 1 2 3 26 26 H 1.08993 * 109.46620 * 60.00111 * 1 2 3 27 27 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47463 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47345 * 300.00024 * 3 2 1 30 30 H 1.09002 * 109.47326 * 59.99819 * 3 2 1 31 31 H 1.09001 * 109.47577 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47390 * 300.00313 * 4 2 1 33 33 H 0.97003 * 120.00212 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47305 * 180.02562 * 13 2 1 35 35 H 1.08996 * 109.47229 * 60.00264 * 13 2 1 36 36 H 0.97000 * 126.69146 * 180.02562 * 17 15 14 37 37 H 1.09003 * 109.46925 * 182.82865 * 19 18 17 38 38 H 1.09007 * 109.46889 * 302.82483 * 19 18 17 39 39 H 1.09002 * 109.47487 * 62.82926 * 19 18 17 40 40 H 1.08999 * 115.54778 * 150.80393 * 20 18 17 41 41 H 1.09002 * 117.49833 * 214.98161 * 21 20 18 42 42 H 1.09002 * 117.49953 * 359.97438 * 21 20 18 43 43 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 44 44 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8705 -0.4822 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2473 0.3979 -5.2572 10 1 2.2253 1.4395 -5.6619 11 1 1.0820 -0.5816 -6.3611 12 1 -0.0608 1.0354 -4.9611 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 0.3972 -0.3150 3.0588 16 8 -0.3705 -1.1806 2.6863 17 7 0.1810 0.4640 4.1341 18 6 1.3379 1.3701 4.2374 19 6 0.8927 2.8282 4.1083 20 6 2.0780 1.1498 5.5583 21 6 1.3199 1.4538 6.8520 22 6 1.6004 0.0035 6.4532 23 6 2.2109 0.9741 3.0632 24 8 3.2770 1.4575 2.7476 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1301 -0.7209 -1.2494 32 1 1.6767 -1.7490 -1.2492 33 1 2.8603 -1.8834 -4.7335 34 1 3.1300 -0.7208 1.2496 35 1 1.6767 -1.7488 1.2493 36 1 -0.5866 0.4343 4.7264 37 1 1.7668 3.4788 4.1368 38 1 0.3682 2.9656 3.1627 39 1 0.2261 3.0790 4.9334 40 1 3.1468 1.3626 5.5394 41 1 1.8901 1.8662 7.6844 42 1 0.2940 1.8112 6.7621 43 1 2.3550 -0.5382 7.0234 44 1 0.7591 -0.5932 6.1007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349010543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:48 Heat of formation + Delta-G solvation = -27.324928 kcal Electronic energy + Delta-G solvation = -25336.427414 eV Core-core repulsion = 21869.349166 eV Total energy + Delta-G solvation = -3467.078248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59369 -38.56792 -38.29805 -36.67727 -35.56181 -33.68672 -32.13385 -30.68472 -27.43050 -26.75242 -26.41917 -25.29606 -23.17504 -23.07337 -22.64197 -20.81176 -20.35753 -18.18682 -17.70281 -17.02103 -16.42154 -16.28210 -15.76317 -15.22854 -15.16462 -14.55615 -14.49796 -14.06496 -13.84967 -13.54814 -13.19949 -12.87019 -12.73355 -12.68936 -12.02846 -12.01153 -11.80154 -11.78742 -11.06866 -10.98845 -10.93817 -10.92214 -10.78483 -10.64883 -10.58661 -10.52417 -10.23840 -9.91249 -9.73460 -9.62473 -9.50750 -9.07949 -8.75568 -8.31534 -5.96033 -3.96361 1.71630 2.35874 2.99201 3.18311 3.34627 3.41111 3.43938 3.44505 3.88552 4.08764 4.42938 4.49435 4.56892 4.81351 4.90223 5.15799 5.22123 5.29623 5.36748 5.40472 5.51010 5.59236 5.62375 5.69059 5.73022 5.77158 5.81082 5.86909 6.18261 6.24851 6.39698 6.46536 6.72659 6.75640 6.83781 7.10390 7.17643 7.19263 7.25507 7.52568 7.66422 7.80312 8.02582 8.25480 8.45921 9.07569 9.66344 11.15610 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.003972 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.497256 B = 7047.632105 C = 7205.674093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.075 4.075 3 C -0.121 4.121 4 C 0.038 3.962 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.124 3.876 14 N -0.566 5.566 15 C 0.704 3.296 16 O -0.535 6.535 17 N -0.728 5.728 18 C 0.150 3.850 19 C -0.143 4.143 20 C -0.158 4.158 21 C -0.165 4.165 22 C -0.170 4.170 23 C 0.534 3.466 24 O -0.460 6.460 25 H 0.023 0.977 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.259 0.741 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.433 0.567 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 6.811 22.200 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.178 4.178 4 C 0.000 4.000 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.004 3.996 14 N -0.311 5.311 15 C 0.405 3.595 16 O -0.408 6.408 17 N -0.393 5.393 18 C 0.059 3.941 19 C -0.201 4.201 20 C -0.177 4.177 21 C -0.202 4.202 22 C -0.207 4.207 23 C 0.320 3.680 24 O -0.328 6.328 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.277 0.723 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.589 6.424 21.568 22.653 hybrid contribution -0.602 0.405 -0.673 0.990 sum -3.191 6.829 20.895 22.213 Atomic orbital electron populations 1.21701 0.94773 1.01442 0.99652 1.21035 0.95958 0.95961 0.94648 1.21735 1.00608 0.95718 0.99773 1.19085 0.96237 0.95239 0.89437 1.21171 1.30982 1.11978 0.90466 0.92324 1.24992 0.95352 0.95079 0.99023 1.69960 1.37158 1.23051 1.23381 0.86646 0.79218 0.79412 0.83045 1.20776 1.21333 1.19951 1.22129 0.99725 0.96546 0.81167 1.46550 1.20714 1.34985 1.28807 1.15844 0.81671 0.81838 0.80115 1.91023 1.48007 1.33646 1.68109 1.45693 1.24004 1.38417 1.31178 1.20863 0.86016 0.93011 0.94234 1.21950 1.03064 0.91597 1.03500 1.22390 1.00132 1.06213 0.88997 1.22973 1.01308 0.98785 0.97152 1.23074 1.03953 0.91469 1.02241 1.20571 0.85309 0.78920 0.83192 1.90790 1.19307 1.54835 1.67916 0.95840 0.91926 0.92906 0.93031 0.91661 0.96031 0.96321 0.96232 0.93090 0.89225 0.88973 0.72258 0.89766 0.91159 0.90537 0.85792 0.88120 0.88513 0.88299 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 7.10 37.16 0.26 -2.17 16 2 C -0.08 -1.55 0.60 -154.51 -0.09 -1.65 16 3 C -0.12 -2.42 7.23 37.16 0.27 -2.15 16 4 C 0.04 0.95 4.04 -27.88 -0.11 0.84 16 5 C -0.51 -13.97 7.65 -34.44 -0.26 -14.23 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.12 2.25 4.74 -4.04 -0.02 2.23 16 14 N -0.57 -8.92 2.14 -120.63 -0.26 -9.18 16 15 C 0.70 10.59 7.05 -88.02 -0.62 9.97 16 16 O -0.53 -9.80 16.31 5.33 0.09 -9.71 16 17 N -0.73 -7.59 4.39 -52.93 -0.23 -7.82 16 18 C 0.15 1.52 1.16 -132.09 -0.15 1.37 16 19 C -0.14 -1.20 8.81 37.16 0.33 -0.87 16 20 C -0.16 -1.29 5.24 -90.58 -0.47 -1.77 16 21 C -0.17 -0.94 9.75 -26.73 -0.26 -1.20 16 22 C -0.17 -1.23 9.87 -26.69 -0.26 -1.49 16 23 C 0.53 7.68 5.33 -10.40 -0.06 7.63 16 24 O -0.46 -7.65 16.89 5.60 0.09 -7.56 16 25 H 0.02 0.44 6.18 -51.93 -0.32 0.12 16 26 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 27 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.38 6.62 -51.93 -0.34 1.03 16 30 H 0.02 0.38 6.19 -51.93 -0.32 0.06 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.09 1.60 8.01 -51.93 -0.42 1.18 16 35 H 0.09 1.69 7.86 -51.93 -0.41 1.28 16 36 H 0.43 3.37 8.67 -40.82 -0.35 3.02 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.08 0.45 7.35 -51.93 -0.38 0.07 16 40 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.46 7.62 -51.93 -0.40 0.06 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.78 6.79 -51.93 -0.35 0.43 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -32.24 347.05 -7.79 -40.03 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.87 Total: 0.33 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.55 Total: -2.00 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.25 Total: -43.05 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.18 Total: -17.27 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.24 -7.79 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349010543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.705 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds