Wall clock time and date at job start Tue Mar 31 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47168 * 2 1 4 4 C 1.52993 * 109.47327 * 239.99691 * 2 1 3 5 5 C 1.50707 * 109.47226 * 60.00319 * 4 2 1 6 6 H 1.08000 * 119.99144 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00295 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99890 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00159 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47119 * 89.99708 * 9 7 5 11 11 H 1.48500 * 109.47091 * 210.00070 * 9 7 5 12 12 H 1.48502 * 109.46951 * 329.99579 * 9 7 5 13 13 C 1.52999 * 109.46944 * 119.99643 * 2 1 3 14 14 N 1.46499 * 109.47598 * 300.00017 * 13 2 1 15 15 C 1.33793 * 124.17522 * 89.97243 * 14 13 2 16 16 O 1.21541 * 123.77376 * 0.03910 * 15 14 13 17 17 N 1.34530 * 112.45749 * 180.02562 * 15 14 13 18 18 C 1.47317 * 106.61699 * 359.97438 * 17 15 14 19 19 C 1.52999 * 110.59379 * 118.68653 * 18 17 15 20 20 C 1.53003 * 110.59766 * 241.47513 * 18 17 15 21 21 C 1.53000 * 117.49792 * 296.47030 * 20 18 17 22 22 C 1.53002 * 60.02940 * 107.48056 * 21 20 18 23 23 C 1.35114 * 124.13831 * 270.12261 * 14 13 2 24 24 O 1.21233 * 127.33615 * 359.96792 * 23 14 13 25 25 H 1.09002 * 109.47145 * 300.00292 * 1 2 3 26 26 H 1.08993 * 109.46620 * 60.00111 * 1 2 3 27 27 H 1.08996 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47463 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47345 * 300.00024 * 3 2 1 30 30 H 1.09002 * 109.47326 * 59.99819 * 3 2 1 31 31 H 1.09001 * 109.47577 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47390 * 300.00313 * 4 2 1 33 33 H 0.97003 * 120.00212 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.47305 * 180.02562 * 13 2 1 35 35 H 1.08996 * 109.47229 * 60.00264 * 13 2 1 36 36 H 0.97000 * 126.69146 * 180.02562 * 17 15 14 37 37 H 1.09003 * 109.46925 * 182.82865 * 19 18 17 38 38 H 1.09007 * 109.46889 * 302.82483 * 19 18 17 39 39 H 1.09002 * 109.47487 * 62.82926 * 19 18 17 40 40 H 1.08999 * 115.54778 * 150.80393 * 20 18 17 41 41 H 1.09002 * 117.49833 * 214.98161 * 21 20 18 42 42 H 1.09002 * 117.49953 * 359.97438 * 21 20 18 43 43 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 44 44 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8705 -0.4822 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2473 0.3979 -5.2572 10 1 2.2253 1.4395 -5.6619 11 1 1.0820 -0.5816 -6.3611 12 1 -0.0608 1.0354 -4.9611 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 0.3972 -0.3150 3.0588 16 8 -0.3705 -1.1806 2.6863 17 7 0.1810 0.4640 4.1341 18 6 1.3379 1.3701 4.2374 19 6 0.8927 2.8282 4.1083 20 6 2.0780 1.1498 5.5583 21 6 1.3199 1.4538 6.8520 22 6 1.6004 0.0035 6.4532 23 6 2.2109 0.9741 3.0632 24 8 3.2770 1.4575 2.7476 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1301 -0.7209 -1.2494 32 1 1.6767 -1.7490 -1.2492 33 1 2.8603 -1.8834 -4.7335 34 1 3.1300 -0.7208 1.2496 35 1 1.6767 -1.7488 1.2493 36 1 -0.5866 0.4343 4.7264 37 1 1.7668 3.4788 4.1368 38 1 0.3682 2.9656 3.1627 39 1 0.2261 3.0790 4.9334 40 1 3.1468 1.3626 5.5394 41 1 1.8901 1.8662 7.6844 42 1 0.2940 1.8112 6.7621 43 1 2.3550 -0.5382 7.0234 44 1 0.7591 -0.5932 6.1007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349010543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:48 Heat of formation + Delta-G solvation = -47.271773 kcal Electronic energy + Delta-G solvation = -25337.292374 eV Core-core repulsion = 21869.349166 eV Total energy + Delta-G solvation = -3467.943208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.72084 -39.73042 -39.40277 -38.12028 -36.69310 -35.08058 -34.01865 -31.52353 -29.28880 -28.38914 -28.12141 -26.23902 -25.08828 -24.12465 -23.13355 -22.04713 -21.24263 -19.76542 -18.90688 -18.40947 -18.05597 -17.50271 -16.75914 -16.63196 -16.37881 -16.14451 -15.53518 -15.29927 -15.19569 -15.10112 -14.50391 -14.32358 -14.00567 -13.61293 -13.57254 -13.44504 -12.85295 -12.76257 -12.73598 -12.63448 -12.56180 -12.40440 -12.32766 -12.15735 -11.96299 -11.58232 -11.51812 -11.38035 -11.24722 -11.05808 -10.86704 -10.59820 -10.52115 -10.38671 -8.15385 -6.22742 0.57848 1.19795 1.40807 1.41358 1.51878 1.97407 2.08110 2.43275 2.79895 2.93092 3.18723 3.38346 3.76216 3.82157 3.93938 4.02618 4.08029 4.17784 4.27461 4.32552 4.39210 4.56622 4.65323 4.67212 4.69326 4.77143 4.82232 4.85356 5.00498 5.02482 5.10701 5.14716 5.17527 5.27929 5.33129 5.39052 5.40596 5.50433 5.72988 5.81693 5.86162 6.08933 6.28940 6.38765 6.89813 7.12552 7.44262 8.96954 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.003972 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.497256 B = 7047.632105 C = 7205.674093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.070 4.070 3 C -0.109 4.109 4 C 0.045 3.955 5 C -0.517 4.517 6 H 0.064 0.936 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.132 3.868 14 N -0.573 5.573 15 C 0.701 3.299 16 O -0.572 6.572 17 N -0.701 5.701 18 C 0.162 3.838 19 C -0.142 4.142 20 C -0.175 4.175 21 C -0.136 4.136 22 C -0.179 4.179 23 C 0.525 3.475 24 O -0.486 6.486 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.041 0.959 31 H -0.006 1.006 32 H -0.008 1.008 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.450 0.550 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 8.963 24.291 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.071 4.071 3 C -0.166 4.166 4 C 0.008 3.992 5 C -0.555 4.555 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.010 3.990 14 N -0.318 5.318 15 C 0.402 3.598 16 O -0.448 6.448 17 N -0.367 5.367 18 C 0.072 3.928 19 C -0.199 4.199 20 C -0.194 4.194 21 C -0.173 4.173 22 C -0.216 4.216 23 C 0.313 3.687 24 O -0.356 6.356 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.297 0.703 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.873 8.619 23.721 25.534 hybrid contribution -0.160 -0.289 -1.253 1.295 sum -4.032 8.330 22.468 24.300 Atomic orbital electron populations 1.21539 0.94286 1.00550 0.99821 1.20861 0.96155 0.96200 0.93856 1.21585 0.99881 0.95020 1.00112 1.18916 0.94570 0.94230 0.91528 1.21527 1.30632 1.12049 0.91331 0.91764 1.25879 0.95592 0.95836 1.02453 1.70096 1.38571 1.24684 1.24177 0.85567 0.79049 0.78267 0.78913 1.19982 1.21112 1.18850 1.21745 0.99562 0.96165 0.81493 1.46536 1.21476 1.35488 1.28253 1.15947 0.81005 0.81928 0.80901 1.91005 1.49023 1.35372 1.69380 1.45554 1.24487 1.37016 1.29628 1.20932 0.84827 0.93832 0.93226 1.22024 1.03836 0.89760 1.04318 1.22321 1.00036 1.08254 0.88777 1.23124 1.01924 0.96885 0.95335 1.23133 1.03937 0.92329 1.02207 1.21378 0.85304 0.77996 0.83981 1.90773 1.20533 1.55484 1.68857 0.94022 0.93133 0.94335 0.93984 0.92842 0.93959 0.98744 0.98935 0.93021 0.89367 0.89677 0.70292 0.89312 0.92359 0.87095 0.86325 0.86567 0.86682 0.87995 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.33 7.10 71.98 0.51 -3.82 16 2 C -0.07 -2.96 0.60 -52.18 -0.03 -2.99 16 3 C -0.11 -4.36 7.23 71.98 0.52 -3.84 16 4 C 0.05 2.39 4.04 29.85 0.12 2.51 16 5 C -0.52 -29.05 7.65 25.60 0.20 -28.86 16 6 H 0.06 3.47 5.68 -2.91 -0.02 3.46 16 7 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 8 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.13 4.93 4.74 86.38 0.41 5.34 16 14 N -0.57 -17.91 2.14 -772.62 -1.65 -19.56 16 15 C 0.70 20.43 7.05 179.44 1.27 21.69 16 16 O -0.57 -20.81 16.31 -3.85 -0.06 -20.87 16 17 N -0.70 -12.93 4.39 -439.80 -1.93 -14.86 16 18 C 0.16 2.89 1.16 2.98 0.00 2.89 16 19 C -0.14 -1.89 8.81 71.98 0.63 -1.25 16 20 C -0.17 -2.37 5.24 -10.77 -0.06 -2.43 16 21 C -0.14 -0.96 9.75 30.60 0.30 -0.66 16 22 C -0.18 -2.09 9.87 30.62 0.30 -1.78 16 23 C 0.53 14.61 5.33 87.88 0.47 15.08 16 24 O -0.49 -15.98 16.89 -2.89 -0.05 -16.03 16 25 H 0.04 1.54 6.18 -2.39 -0.01 1.53 16 26 H 0.05 2.18 6.62 -2.39 -0.02 2.17 16 27 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 28 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.05 2.25 6.62 -2.39 -0.02 2.23 16 30 H 0.04 1.49 6.19 -2.39 -0.01 1.48 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.09 3.28 8.01 -2.39 -0.02 3.26 16 35 H 0.08 3.27 7.86 -2.39 -0.02 3.26 16 36 H 0.45 5.51 8.67 -92.71 -0.80 4.71 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.11 0.75 7.35 -2.39 -0.02 0.73 16 40 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.11 0.44 7.62 -2.39 -0.02 0.42 16 43 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 1.23 6.79 -2.39 -0.02 1.22 16 Total: -1.00 -71.60 347.05 3.92 -67.68 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.20 Total: 11.47 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.10 Total: 2.30 kcal Atomic # 7 Polarization: -88.18 SS G_CDS: -3.30 Total: -91.48 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.11 Total: -36.90 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.60 3.92 -67.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349010543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.405 kcal (2) G-P(sol) polarization free energy of solvation -71.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds