Wall clock time and date at job start Tue Mar 31 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 C 1.53002 * 109.46877 * 240.00395 * 2 1 3 5 5 C 1.50696 * 109.47359 * 60.00143 * 4 2 1 6 6 H 1.07997 * 120.00318 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99796 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99797 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00399 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47453 * 89.99992 * 9 7 5 11 11 H 1.48501 * 109.47414 * 210.00095 * 9 7 5 12 12 H 1.48503 * 109.46845 * 329.99729 * 9 7 5 13 13 C 1.52995 * 109.47529 * 120.00162 * 2 1 3 14 14 N 1.46508 * 109.46917 * 300.00332 * 13 2 1 15 15 C 1.33788 * 124.17795 * 90.02643 * 14 13 2 16 16 O 1.21541 * 123.76957 * 359.95658 * 15 14 13 17 17 N 1.34529 * 112.45716 * 179.97438 * 15 14 13 18 18 C 1.47318 * 106.61686 * 0.22584 * 17 15 14 19 19 C 1.52996 * 110.59321 * 241.24477 * 18 17 15 20 20 C 1.52997 * 110.59782 * 118.30292 * 18 17 15 21 21 C 1.52996 * 117.49977 * 135.20120 * 20 18 17 22 22 C 1.52999 * 117.50098 * 66.53586 * 20 18 17 23 23 C 1.34769 * 124.17430 * 269.98307 * 14 13 2 24 24 O 1.21234 * 127.15997 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.46984 * 299.99504 * 1 2 3 26 26 H 1.08997 * 109.47179 * 60.00396 * 1 2 3 27 27 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47129 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46843 * 300.00481 * 3 2 1 30 30 H 1.09002 * 109.47145 * 59.99951 * 3 2 1 31 31 H 1.09006 * 109.46455 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47311 * 299.99185 * 4 2 1 33 33 H 0.96995 * 119.99789 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47214 * 180.02562 * 13 2 1 35 35 H 1.09003 * 109.47117 * 59.99986 * 13 2 1 36 36 H 0.97001 * 126.68793 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.47540 * 59.30273 * 19 18 17 38 38 H 1.09008 * 109.46915 * 179.29883 * 19 18 17 39 39 H 1.09002 * 109.47232 * 299.30084 * 19 18 17 40 40 H 1.09002 * 115.54864 * 280.86789 * 20 18 17 41 41 H 1.09004 * 117.49758 * 359.97438 * 21 20 18 42 42 H 1.09000 * 117.50205 * 145.01764 * 21 20 18 43 43 H 1.08997 * 117.50014 * 214.97611 * 22 20 18 44 44 H 1.08997 * 117.49796 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3807 7 6 1.8712 -0.4815 -3.7320 8 7 1.4324 0.1383 -4.8058 9 14 2.9462 -1.9994 -3.9035 10 1 2.0886 -3.2109 -3.9491 11 1 3.7382 -1.9062 -5.1562 12 1 3.8667 -2.0879 -2.7415 13 6 2.0401 -0.7212 1.2491 14 7 1.5517 -0.0307 2.4454 15 6 0.3977 -0.3158 3.0594 16 8 -0.3700 -1.1812 2.6866 17 7 0.1819 0.4626 4.1352 18 6 1.3356 1.3733 4.2345 19 6 2.0774 1.1601 5.5555 20 6 0.8856 2.8291 4.0970 21 6 1.4677 3.8445 5.0823 22 6 0.0068 3.4049 5.2092 23 6 2.2098 0.9698 3.0637 24 8 3.2773 1.4496 2.7473 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7207 -1.2495 32 1 1.6768 -1.7488 -1.2493 33 1 1.6667 -0.1931 -5.6868 34 1 3.1301 -0.7208 1.2493 35 1 1.6768 -1.7489 1.2491 36 1 -0.5856 0.4327 4.7275 37 1 2.4229 0.1281 5.6159 38 1 2.9333 1.8333 5.6043 39 1 1.4043 1.3671 6.3876 40 1 0.6952 3.1681 3.0787 41 1 2.1709 3.4752 5.8289 42 1 1.6599 4.8516 4.7125 43 1 -0.7614 4.1231 4.9227 44 1 -0.2511 2.7465 6.0386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349010547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:51 Heat of formation + Delta-G solvation = -23.274796 kcal Electronic energy + Delta-G solvation = -25377.391262 eV Core-core repulsion = 21910.488641 eV Total energy + Delta-G solvation = -3466.902621 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.62770 -38.74313 -38.27188 -36.83779 -35.71616 -33.75329 -32.11180 -30.38176 -27.93906 -27.09645 -26.46603 -25.57509 -23.06204 -22.98542 -22.65381 -20.76877 -20.02449 -18.18152 -17.75266 -17.08649 -16.88085 -16.45623 -15.65527 -15.56643 -15.27505 -14.79470 -14.14611 -14.07165 -13.68564 -13.62593 -13.52689 -12.98095 -12.72619 -12.60286 -12.30776 -12.05443 -11.98980 -11.63842 -11.20391 -11.09554 -11.01376 -10.92243 -10.90071 -10.82087 -10.52174 -10.44842 -10.04365 -9.89137 -9.79771 -9.66969 -9.53540 -9.23067 -8.84474 -8.48940 -5.99272 -3.96068 1.67739 2.27993 3.01704 3.14558 3.34490 3.37778 3.41944 3.44883 3.94211 4.13510 4.34106 4.49380 4.54896 4.67517 4.90252 5.06391 5.16065 5.26239 5.32642 5.34568 5.45015 5.46972 5.56339 5.62964 5.68596 5.73215 5.75105 5.79386 6.09122 6.15669 6.30186 6.42965 6.71325 6.73522 6.76021 6.96036 7.11080 7.15180 7.18242 7.23349 7.42228 7.48536 7.82651 8.21955 8.58861 9.05404 9.63037 11.13721 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.004289 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.610962 B = 6526.559915 C = 6708.164397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.066 4.066 3 C -0.122 4.122 4 C -0.001 4.001 5 C -0.508 4.508 6 H 0.077 0.923 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.122 3.878 14 N -0.566 5.566 15 C 0.703 3.297 16 O -0.535 6.535 17 N -0.724 5.724 18 C 0.151 3.849 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.164 4.164 22 C -0.166 4.166 23 C 0.532 3.468 24 O -0.457 6.457 25 H 0.025 0.975 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.018 0.982 32 H 0.015 0.985 33 H 0.262 0.738 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.435 0.565 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 4.604 24.171 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.179 4.179 4 C -0.039 4.039 5 C -0.546 4.546 6 H 0.095 0.905 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.311 5.311 15 C 0.404 3.596 16 O -0.408 6.408 17 N -0.388 5.388 18 C 0.060 3.940 19 C -0.207 4.207 20 C -0.176 4.176 21 C -0.202 4.202 22 C -0.203 4.203 23 C 0.318 3.682 24 O -0.326 6.326 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.278 0.722 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.099 4.313 23.483 23.876 hybrid contribution 0.127 -0.807 -0.109 0.824 sum 0.028 3.506 23.374 23.636 Atomic orbital electron populations 1.21716 0.94281 1.01536 1.00211 1.20823 0.96324 0.96016 0.93501 1.21741 1.00495 0.95412 1.00288 1.19586 0.96155 0.95506 0.92604 1.21061 1.31641 1.13301 0.88560 0.90462 1.24994 0.95750 0.96752 0.95944 1.69906 1.46023 1.40604 0.97843 0.86849 0.81291 0.83971 0.77593 1.20361 1.21527 1.19031 1.22128 0.99703 0.96557 0.81454 1.46447 1.20810 1.35241 1.28648 1.15874 0.81642 0.81968 0.80150 1.91022 1.47959 1.33824 1.67994 1.45639 1.24453 1.37517 1.31189 1.20819 0.86335 0.90385 0.96482 1.22090 1.00995 1.03605 0.94049 1.22228 1.06691 0.90997 0.97708 1.23167 0.96404 0.99200 1.01410 1.22970 0.94287 1.03351 0.99712 1.20519 0.85493 0.78959 0.83267 1.90792 1.19351 1.54945 1.67506 0.95569 0.91378 0.92957 0.93083 0.91113 0.95818 0.96361 0.96718 0.92842 0.89214 0.88973 0.72164 0.91282 0.89476 0.90436 0.86694 0.87668 0.88049 0.88123 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 7.10 37.16 0.26 -2.19 16 2 C -0.07 -1.32 0.60 -154.51 -0.09 -1.42 16 3 C -0.12 -2.43 7.23 37.16 0.27 -2.16 16 4 C 0.00 -0.02 3.11 -27.88 -0.09 -0.10 16 5 C -0.51 -14.11 8.20 -34.44 -0.28 -14.39 16 6 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.12 2.10 4.74 -4.04 -0.02 2.08 16 14 N -0.57 -8.68 2.13 -120.73 -0.26 -8.93 16 15 C 0.70 10.40 7.05 -88.02 -0.62 9.78 16 16 O -0.54 -9.65 16.32 5.33 0.09 -9.56 16 17 N -0.72 -7.48 5.90 -52.94 -0.31 -7.80 16 18 C 0.15 1.49 1.17 -132.09 -0.16 1.34 16 19 C -0.15 -1.06 7.63 37.16 0.28 -0.78 16 20 C -0.16 -1.41 5.42 -90.62 -0.49 -1.90 16 21 C -0.16 -1.11 9.68 -26.69 -0.26 -1.37 16 22 C -0.17 -1.03 9.92 -26.69 -0.26 -1.29 16 23 C 0.53 7.47 5.32 -10.56 -0.06 7.41 16 24 O -0.46 -7.44 16.87 5.60 0.09 -7.35 16 25 H 0.03 0.49 6.18 -51.93 -0.32 0.17 16 26 H 0.07 1.52 6.62 -51.93 -0.34 1.17 16 27 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.55 6.62 -51.93 -0.34 1.20 16 30 H 0.02 0.42 6.19 -51.93 -0.32 0.10 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 32 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.09 1.48 8.00 -51.93 -0.42 1.07 16 35 H 0.09 1.57 7.86 -51.93 -0.41 1.16 16 36 H 0.43 3.35 8.96 -40.82 -0.37 2.98 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.59 6.75 -51.92 -0.35 0.24 16 39 H 0.08 0.37 7.27 -51.93 -0.38 0.00 16 40 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.11 0.59 5.95 -51.93 -0.31 0.28 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.46 7.47 -51.93 -0.39 0.07 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -33.01 341.71 -7.47 -40.48 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.72 Total: 1.11 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.61 Total: -3.17 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.20 Total: -43.79 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.18 Total: -16.91 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.01 -7.47 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349010547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.201 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds