Wall clock time and date at job start Tue Mar 31 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 C 1.53002 * 109.46877 * 240.00395 * 2 1 3 5 5 C 1.50696 * 109.47359 * 60.00143 * 4 2 1 6 6 H 1.07997 * 120.00318 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99796 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99797 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00399 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47453 * 89.99992 * 9 7 5 11 11 H 1.48501 * 109.47414 * 210.00095 * 9 7 5 12 12 H 1.48503 * 109.46845 * 329.99729 * 9 7 5 13 13 C 1.52995 * 109.47529 * 120.00162 * 2 1 3 14 14 N 1.46508 * 109.46917 * 300.00332 * 13 2 1 15 15 C 1.33788 * 124.17795 * 90.02643 * 14 13 2 16 16 O 1.21541 * 123.76957 * 359.95658 * 15 14 13 17 17 N 1.34529 * 112.45716 * 179.97438 * 15 14 13 18 18 C 1.47318 * 106.61686 * 0.22584 * 17 15 14 19 19 C 1.52996 * 110.59321 * 241.24477 * 18 17 15 20 20 C 1.52997 * 110.59782 * 118.30292 * 18 17 15 21 21 C 1.52996 * 117.49977 * 135.20120 * 20 18 17 22 22 C 1.52999 * 117.50098 * 66.53586 * 20 18 17 23 23 C 1.34769 * 124.17430 * 269.98307 * 14 13 2 24 24 O 1.21234 * 127.15997 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.46984 * 299.99504 * 1 2 3 26 26 H 1.08997 * 109.47179 * 60.00396 * 1 2 3 27 27 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47129 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46843 * 300.00481 * 3 2 1 30 30 H 1.09002 * 109.47145 * 59.99951 * 3 2 1 31 31 H 1.09006 * 109.46455 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47311 * 299.99185 * 4 2 1 33 33 H 0.96995 * 119.99789 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47214 * 180.02562 * 13 2 1 35 35 H 1.09003 * 109.47117 * 59.99986 * 13 2 1 36 36 H 0.97001 * 126.68793 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.47540 * 59.30273 * 19 18 17 38 38 H 1.09008 * 109.46915 * 179.29883 * 19 18 17 39 39 H 1.09002 * 109.47232 * 299.30084 * 19 18 17 40 40 H 1.09002 * 115.54864 * 280.86789 * 20 18 17 41 41 H 1.09004 * 117.49758 * 359.97438 * 21 20 18 42 42 H 1.09000 * 117.50205 * 145.01764 * 21 20 18 43 43 H 1.08997 * 117.50014 * 214.97611 * 22 20 18 44 44 H 1.08997 * 117.49796 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3807 7 6 1.8712 -0.4815 -3.7320 8 7 1.4324 0.1383 -4.8058 9 14 2.9462 -1.9994 -3.9035 10 1 2.0886 -3.2109 -3.9491 11 1 3.7382 -1.9062 -5.1562 12 1 3.8667 -2.0879 -2.7415 13 6 2.0401 -0.7212 1.2491 14 7 1.5517 -0.0307 2.4454 15 6 0.3977 -0.3158 3.0594 16 8 -0.3700 -1.1812 2.6866 17 7 0.1819 0.4626 4.1352 18 6 1.3356 1.3733 4.2345 19 6 2.0774 1.1601 5.5555 20 6 0.8856 2.8291 4.0970 21 6 1.4677 3.8445 5.0823 22 6 0.0068 3.4049 5.2092 23 6 2.2098 0.9698 3.0637 24 8 3.2773 1.4496 2.7473 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7207 -1.2495 32 1 1.6768 -1.7488 -1.2493 33 1 1.6667 -0.1931 -5.6868 34 1 3.1301 -0.7208 1.2493 35 1 1.6768 -1.7489 1.2491 36 1 -0.5856 0.4327 4.7275 37 1 2.4229 0.1281 5.6159 38 1 2.9333 1.8333 5.6043 39 1 1.4043 1.3671 6.3876 40 1 0.6952 3.1681 3.0787 41 1 2.1709 3.4752 5.8289 42 1 1.6599 4.8516 4.7125 43 1 -0.7614 4.1231 4.9227 44 1 -0.2511 2.7465 6.0386 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349010547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:51 Heat of formation + Delta-G solvation = -45.446930 kcal Electronic energy + Delta-G solvation = -25378.352718 eV Core-core repulsion = 21910.488641 eV Total energy + Delta-G solvation = -3467.864077 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.70832 -39.79707 -39.38047 -38.22311 -36.81764 -35.11692 -34.06974 -31.11837 -29.88222 -28.50410 -28.17141 -26.43731 -24.77565 -24.08838 -23.27103 -21.97059 -20.89678 -19.75622 -18.96199 -18.85209 -17.99268 -17.59238 -16.81445 -16.57444 -16.44230 -16.05213 -15.70200 -15.55190 -15.25054 -14.97988 -14.54317 -14.30014 -14.22360 -13.71810 -13.54121 -13.24641 -12.94628 -12.89400 -12.76221 -12.65291 -12.60141 -12.34340 -12.15714 -12.06774 -11.84375 -11.59663 -11.54042 -11.50547 -11.22323 -11.15010 -10.90842 -10.71632 -10.60748 -10.37617 -8.23158 -6.24648 0.58679 1.19768 1.37462 1.38542 1.49657 1.98329 2.11853 2.39254 2.66728 3.11789 3.13416 3.44317 3.64387 3.82815 3.87526 3.94328 4.01117 4.15316 4.24919 4.34276 4.39588 4.54041 4.59774 4.63888 4.69515 4.72597 4.82391 4.90121 4.96202 4.97864 4.99556 5.05668 5.19961 5.24197 5.28719 5.30364 5.31021 5.41371 5.56914 5.71312 5.85180 6.08637 6.35142 6.40243 6.80951 7.14071 7.37649 8.93012 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.004289 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.610962 B = 6526.559915 C = 6708.164397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.064 4.064 3 C -0.109 4.109 4 C 0.002 3.998 5 C -0.507 4.507 6 H 0.042 0.958 7 C 0.004 3.996 8 N -0.953 5.953 9 Si 0.941 3.059 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.245 1.245 13 C 0.128 3.872 14 N -0.574 5.574 15 C 0.698 3.302 16 O -0.572 6.572 17 N -0.700 5.700 18 C 0.162 3.838 19 C -0.147 4.147 20 C -0.185 4.185 21 C -0.157 4.157 22 C -0.145 4.145 23 C 0.523 3.477 24 O -0.483 6.483 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.450 0.550 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 4.161 27.650 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 C -0.166 4.166 4 C -0.036 4.036 5 C -0.545 4.545 6 H 0.060 0.940 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.765 3.235 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.168 1.168 13 C 0.007 3.993 14 N -0.318 5.318 15 C 0.399 3.601 16 O -0.448 6.448 17 N -0.365 5.365 18 C 0.072 3.928 19 C -0.204 4.204 20 C -0.205 4.205 21 C -0.194 4.194 22 C -0.182 4.182 23 C 0.311 3.689 24 O -0.354 6.354 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.297 0.703 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.555 3.904 27.033 27.319 hybrid contribution -0.135 -0.536 -1.171 1.295 sum 0.420 3.368 25.862 26.083 Atomic orbital electron populations 1.21544 0.94668 1.00793 0.99327 1.20726 0.95895 0.95991 0.93908 1.21576 1.00171 0.95328 0.99536 1.19521 0.96278 0.95529 0.92293 1.21319 1.30501 1.12269 0.90432 0.94012 1.25904 0.97469 1.00253 0.95570 1.70061 1.48097 1.42811 0.98494 0.85796 0.79715 0.79785 0.78214 1.19532 1.21357 1.16820 1.21837 1.00149 0.96402 0.80956 1.46463 1.21428 1.35713 1.28235 1.16012 0.81088 0.82079 0.80902 1.91000 1.48960 1.35596 1.69246 1.45555 1.25009 1.36180 1.29725 1.20892 0.85254 0.90613 0.96036 1.22166 1.01590 1.03772 0.92883 1.22126 1.10147 0.90692 0.97532 1.23306 0.97345 0.98401 1.00367 1.23114 0.94003 1.02729 0.98344 1.21285 0.85486 0.78066 0.84046 1.90772 1.20602 1.55520 1.68476 0.94295 0.94241 0.93537 0.93229 0.94006 0.94313 0.95801 0.96157 0.92788 0.88308 0.88609 0.70334 0.91502 0.88771 0.87149 0.89406 0.85925 0.88119 0.87816 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 7.10 71.98 0.51 -3.92 16 2 C -0.06 -2.61 0.60 -52.18 -0.03 -2.64 16 3 C -0.11 -4.42 7.23 71.98 0.52 -3.90 16 4 C 0.00 0.08 3.11 29.85 0.09 0.17 16 5 C -0.51 -29.06 8.20 25.60 0.21 -28.85 16 6 H 0.04 2.63 5.92 -2.91 -0.02 2.62 16 7 C 0.00 0.24 5.47 84.65 0.46 0.70 16 8 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 9 Si 0.94 44.97 27.47 68.60 1.88 46.85 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.24 -10.79 6.54 99.48 0.65 -10.13 16 13 C 0.13 4.30 4.74 86.38 0.41 4.71 16 14 N -0.57 -16.97 2.13 -773.11 -1.65 -18.62 16 15 C 0.70 19.73 7.05 179.44 1.27 20.99 16 16 O -0.57 -20.17 16.32 -3.84 -0.06 -20.23 16 17 N -0.70 -12.73 5.90 -439.82 -2.59 -15.33 16 18 C 0.16 2.81 1.17 2.98 0.00 2.81 16 19 C -0.15 -1.51 7.63 71.98 0.55 -0.96 16 20 C -0.19 -2.91 5.42 -10.80 -0.06 -2.97 16 21 C -0.16 -1.61 9.68 30.62 0.30 -1.31 16 22 C -0.15 -1.25 9.92 30.62 0.30 -0.95 16 23 C 0.52 13.97 5.32 87.94 0.47 14.44 16 24 O -0.48 -15.25 16.87 -2.89 -0.05 -15.30 16 25 H 0.04 1.49 6.18 -2.39 -0.01 1.47 16 26 H 0.04 1.84 6.62 -2.39 -0.02 1.82 16 27 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.91 6.62 -2.38 -0.02 1.90 16 30 H 0.04 1.42 6.19 -2.39 -0.01 1.40 16 31 H 0.02 1.10 7.20 -2.38 -0.02 1.08 16 32 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 33 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.10 3.14 8.00 -2.39 -0.02 3.12 16 35 H 0.10 3.16 7.86 -2.39 -0.02 3.14 16 36 H 0.45 5.46 8.96 -92.71 -0.83 4.62 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 0.91 6.75 -2.38 -0.02 0.89 16 39 H 0.11 0.46 7.27 -2.39 -0.02 0.44 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.12 0.84 5.95 -2.39 -0.01 0.83 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.12 0.50 7.47 -2.39 -0.02 0.48 16 Total: -1.00 -74.25 341.71 2.97 -71.29 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.13 Total: 13.30 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.00 Total: -1.68 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -3.94 Total: -94.22 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.11 Total: -35.54 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -74.25 2.97 -71.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349010547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.838 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds