Wall clock time and date at job start Tue Mar 31 2020 06:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47293 * 2 1 4 4 C 1.53005 * 109.47177 * 179.97438 * 3 2 1 5 5 C 1.53707 * 112.37333 * 61.01763 * 4 3 2 6 6 C 1.54666 * 104.70251 * 95.91187 * 5 4 3 7 7 C 1.54830 * 104.80894 * 1.47982 * 6 5 4 8 8 N 1.46938 * 104.17893 * 24.09252 * 7 6 5 9 9 C 1.33351 * 150.56196 * 135.08006 * 8 7 6 10 10 O 1.21534 * 124.21159 * 22.79309 * 9 8 7 11 11 N 1.34372 * 111.56969 * 202.76921 * 9 8 7 12 12 C 1.46500 * 124.34170 * 169.10015 * 11 9 8 13 13 C 1.53006 * 109.46941 * 90.02684 * 12 11 9 14 14 C 1.52997 * 109.47313 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47556 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99698 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00598 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99718 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00307 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47238 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47106 * 120.00151 * 19 17 15 22 22 H 1.48501 * 109.47372 * 240.00042 * 19 17 15 23 23 C 1.35175 * 111.31725 * 349.12946 * 11 9 8 24 24 O 1.21229 * 127.34382 * 177.43317 * 23 11 9 25 25 H 1.09005 * 109.47047 * 59.99931 * 1 2 3 26 26 H 1.08999 * 109.47300 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47302 * 300.00611 * 1 2 3 28 28 H 1.08993 * 109.47484 * 239.99979 * 2 1 3 29 29 H 1.09005 * 109.47047 * 120.00068 * 2 1 3 30 30 H 1.09005 * 109.46949 * 60.00039 * 3 2 1 31 31 H 1.08996 * 109.47473 * 299.99534 * 3 2 1 32 32 H 1.09002 * 110.41285 * 337.06972 * 5 4 3 33 33 H 1.09002 * 110.40968 * 214.74965 * 5 4 3 34 34 H 1.08989 * 110.37022 * 120.31727 * 6 5 4 35 35 H 1.08997 * 110.36727 * 242.53680 * 6 5 4 36 36 H 1.09008 * 110.48826 * 142.76676 * 7 6 5 37 37 H 1.09002 * 110.49555 * 265.27859 * 7 6 5 38 38 H 1.08998 * 109.47185 * 210.02921 * 12 11 9 39 39 H 1.08998 * 109.47194 * 330.03213 * 12 11 9 40 40 H 1.08999 * 109.46866 * 300.00244 * 13 12 11 41 41 H 1.08998 * 109.46745 * 60.00253 * 13 12 11 42 42 H 1.09007 * 109.47099 * 300.00521 * 14 13 12 43 43 H 1.09010 * 109.46922 * 59.99742 * 14 13 12 44 44 H 0.96996 * 120.00128 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.1556 0.7535 -1.2424 6 6 4.4480 1.9076 -2.2297 7 6 4.0432 3.1929 -1.4671 8 7 4.1447 2.8177 -0.0501 9 6 4.5339 3.0850 1.1970 10 8 4.7398 4.2043 1.6235 11 7 4.6694 1.9628 1.9235 12 6 5.2969 1.9052 3.2461 13 6 4.2351 2.1300 4.3246 14 6 4.8903 2.0692 5.7058 15 6 3.8445 2.2899 6.7681 16 1 2.8152 2.4564 6.4862 17 6 4.2014 2.2793 8.0998 18 7 5.4546 2.0760 8.4431 19 14 2.9050 2.5536 9.4164 20 1 1.5819 2.7569 8.7737 21 1 2.8451 1.3667 10.3070 22 1 3.2574 3.7547 10.2155 23 6 4.1531 0.8937 1.2773 24 8 4.1584 -0.2613 1.6456 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.4305 0.0614 -1.6705 33 1 5.0764 0.2287 -0.9878 34 1 5.5084 1.9331 -2.4802 35 1 3.8481 1.7954 -3.1328 36 1 4.7320 4.0058 -1.6969 37 1 3.0211 3.4784 -1.7161 38 1 5.7573 0.9274 3.3876 39 1 6.0598 2.6802 3.3203 40 1 3.7748 3.1078 4.1830 41 1 3.4722 1.3550 4.2503 42 1 5.3504 1.0911 5.8470 43 1 5.6536 2.8439 5.7803 44 1 5.7058 2.0689 9.3799 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349059388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:19 Heat of formation + Delta-G solvation = -46.204496 kcal Electronic energy + Delta-G solvation = -24682.399792 eV Core-core repulsion = 21214.502865 eV Total energy + Delta-G solvation = -3467.896927 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.75755 -38.50967 -38.31196 -35.72264 -34.78451 -34.06954 -32.38195 -30.93427 -30.07336 -27.50628 -26.40553 -24.71537 -23.73707 -22.18459 -21.84582 -20.85982 -20.21473 -19.73731 -17.16770 -17.04691 -16.40024 -16.25248 -15.81961 -15.47280 -14.89457 -14.77512 -14.39506 -14.32951 -14.08797 -13.94276 -13.60424 -13.12915 -12.81372 -12.65785 -12.42926 -12.20197 -12.10406 -11.98630 -11.59392 -11.47841 -11.33047 -11.01968 -10.94634 -10.89803 -10.83669 -10.67452 -10.46467 -10.02352 -9.76126 -9.73960 -9.29311 -9.13197 -8.92228 -8.32810 -5.97708 -3.99664 1.70415 2.04914 2.91458 3.13291 3.33881 3.40929 3.45760 3.81896 3.95153 4.32961 4.46149 4.49385 4.57859 4.75391 4.80198 4.87150 5.05046 5.09004 5.24156 5.33680 5.37514 5.38847 5.41914 5.48206 5.52144 5.59409 5.64317 5.72243 5.75958 5.80696 5.89307 6.00201 6.02571 6.13454 6.43241 6.72914 6.78302 7.04215 7.31568 7.49495 7.67007 7.80234 8.00952 8.18529 8.43918 9.06269 9.64100 11.13854 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.003867 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.001642 B = 7239.629429 C = 7897.178576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.101 4.101 4 C 0.072 3.928 5 C -0.112 4.112 6 C -0.137 4.137 7 C 0.163 3.837 8 N -0.643 5.643 9 C 0.738 3.262 10 O -0.528 6.528 11 N -0.575 5.575 12 C 0.117 3.883 13 C -0.123 4.123 14 C 0.025 3.975 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.531 3.469 24 O -0.464 6.464 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 -2.857 -26.101 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.139 4.139 4 C -0.019 4.019 5 C -0.150 4.150 6 C -0.175 4.175 7 C 0.043 3.957 8 N -0.384 5.384 9 C 0.443 3.557 10 O -0.400 6.400 11 N -0.320 5.320 12 C -0.002 4.002 13 C -0.162 4.162 14 C -0.013 4.013 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.317 3.683 24 O -0.333 6.333 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.586 -2.571 -25.426 25.964 hybrid contribution -0.598 0.230 0.939 1.136 sum -5.184 -2.341 -24.487 25.139 Atomic orbital electron populations 1.21739 0.95206 1.01952 1.01862 1.21606 0.96260 0.95211 1.03548 1.21615 0.89401 0.99022 1.03903 1.22670 0.96923 0.86663 0.95685 1.22319 1.02129 0.97747 0.92827 1.22868 1.02996 0.93388 0.98250 1.21995 1.02174 0.97695 0.73858 1.48543 1.63396 1.19091 1.07368 1.14879 0.77567 0.84277 0.79025 1.90992 1.54759 1.20941 1.73273 1.46990 1.56159 1.08332 1.20534 1.22099 0.96972 1.03897 0.77237 1.22010 0.97143 1.01064 0.95950 1.19039 0.96171 0.97520 0.88528 1.21223 0.94660 1.48722 0.91005 0.92656 1.25011 0.95344 0.95325 0.98754 1.69972 1.16314 1.50117 1.17055 0.86523 0.81905 0.77750 0.81761 1.19760 1.20991 1.20977 1.20535 0.76982 0.85147 0.85634 1.90763 1.54718 1.16415 1.71441 0.92796 0.92379 0.92535 0.91252 0.90533 0.90820 0.89809 0.88813 0.90207 0.90244 0.89272 0.89441 0.90213 0.88977 0.89154 0.92459 0.92927 0.96239 0.96159 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.15 5.57 -26.73 -0.15 -1.30 16 3 C -0.10 -0.95 4.69 -26.73 -0.13 -1.08 16 4 C 0.07 0.78 0.50 -131.14 -0.07 0.72 16 5 C -0.11 -0.85 6.07 -25.49 -0.15 -1.01 16 6 C -0.14 -0.72 7.04 -24.89 -0.18 -0.90 16 7 C 0.16 1.20 7.22 -2.84 -0.02 1.18 16 8 N -0.64 -7.83 3.97 -162.54 -0.64 -8.47 16 9 C 0.74 12.33 8.49 -88.55 -0.75 11.58 16 10 O -0.53 -10.72 17.66 5.34 0.09 -10.63 16 11 N -0.58 -9.69 2.63 -121.14 -0.32 -10.01 16 12 C 0.12 2.19 5.71 -4.04 -0.02 2.17 16 13 C -0.12 -2.73 5.48 -26.73 -0.15 -2.87 16 14 C 0.03 0.67 4.97 -27.89 -0.14 0.53 16 15 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 19 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.53 8.03 6.63 -10.81 -0.07 7.96 16 24 O -0.46 -7.97 16.65 5.60 0.09 -7.88 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.50 6.32 -51.93 -0.33 0.17 16 29 H 0.08 0.89 6.76 -51.93 -0.35 0.54 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.59 7.32 -51.93 -0.38 0.21 16 32 H 0.09 0.55 6.06 -51.93 -0.31 0.24 16 33 H 0.08 0.69 7.85 -51.93 -0.41 0.29 16 34 H 0.08 0.40 8.14 -51.94 -0.42 -0.02 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.08 0.45 7.51 -51.93 -0.39 0.06 16 38 H 0.09 1.66 8.01 -51.93 -0.42 1.24 16 39 H 0.09 1.67 8.02 -51.93 -0.42 1.26 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -34.83 355.38 -8.77 -43.60 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -7.20 Total: -4.76 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.86 Total: 2.25 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.23 Total: -45.14 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.19 Total: -18.50 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.83 -8.77 -43.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349059388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.609 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds