Wall clock time and date at job start Tue Mar 31 2020 06:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47073 * 2 1 4 4 C 1.53004 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.53705 * 112.37849 * 297.00634 * 4 3 2 6 6 C 1.54661 * 104.59704 * 264.14379 * 5 4 3 7 7 C 1.54837 * 104.81183 * 358.45734 * 6 5 4 8 8 N 1.46946 * 104.17336 * 335.90958 * 7 6 5 9 9 C 1.33344 * 150.55797 * 224.90208 * 8 7 6 10 10 O 1.21539 * 124.21844 * 337.26726 * 9 8 7 11 11 N 1.34378 * 111.56661 * 157.24025 * 9 8 7 12 12 C 1.46500 * 124.34036 * 190.84157 * 11 9 8 13 13 C 1.52996 * 109.47223 * 90.02781 * 12 11 9 14 14 C 1.52998 * 109.47089 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99983 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 C 1.35173 * 111.31803 * 11.10990 * 11 9 8 24 24 O 1.21229 * 127.35022 * 182.32430 * 23 11 9 25 25 H 1.08998 * 109.47074 * 59.99652 * 1 2 3 26 26 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46610 * 299.99860 * 1 2 3 28 28 H 1.09008 * 109.46513 * 240.00404 * 2 1 3 29 29 H 1.08998 * 109.47074 * 120.00348 * 2 1 3 30 30 H 1.09008 * 109.47121 * 60.00777 * 3 2 1 31 31 H 1.08998 * 109.47455 * 300.00115 * 3 2 1 32 32 H 1.08999 * 110.40746 * 145.36387 * 5 4 3 33 33 H 1.08994 * 110.51307 * 22.97626 * 5 4 3 34 34 H 1.08996 * 110.37073 * 239.62600 * 6 5 4 35 35 H 1.09002 * 110.46481 * 117.33641 * 6 5 4 36 36 H 1.09001 * 110.49205 * 217.23895 * 7 6 5 37 37 H 1.08997 * 110.49247 * 94.58438 * 7 6 5 38 38 H 1.08996 * 109.47285 * 330.01875 * 12 11 9 39 39 H 1.09010 * 109.47025 * 210.02580 * 12 11 9 40 40 H 1.08996 * 109.47176 * 60.00132 * 13 12 11 41 41 H 1.08997 * 109.47205 * 299.99644 * 13 12 11 42 42 H 1.09004 * 109.47223 * 59.99393 * 14 13 12 43 43 H 1.09010 * 109.47071 * 299.99745 * 14 13 12 44 44 H 0.97000 * 119.99462 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.1558 0.7969 1.2653 6 6 4.4458 1.9860 2.2108 7 6 4.0409 3.2427 1.4019 8 7 4.1447 2.8167 -0.0006 9 6 4.5351 3.0394 -1.2560 10 8 4.7413 4.1428 -1.7221 11 7 4.6727 1.8918 -1.9414 12 6 5.3008 1.7875 -3.2608 13 6 6.7996 1.5295 -3.0932 14 6 7.4556 1.4212 -4.4711 15 6 8.9317 1.1664 -4.3060 16 1 9.3593 1.0899 -3.3173 17 6 9.7366 1.0321 -5.4174 18 7 9.2162 1.1258 -6.6216 19 14 11.5665 0.7171 -5.2128 20 1 12.2884 2.0135 -5.1537 21 1 11.8013 -0.0379 -3.9557 22 1 12.0645 -0.0746 -6.3662 23 6 4.1520 0.8470 -1.2600 24 8 4.1539 -0.3199 -1.5888 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 5.0776 0.2653 1.0292 33 1 3.4323 0.1189 1.7180 34 1 5.5059 2.0215 2.4616 35 1 3.8447 1.9080 3.1167 36 1 4.7288 4.0640 1.6031 37 1 3.0175 3.5346 1.6373 38 1 5.1513 2.7176 -3.8090 39 1 4.8499 0.9634 -3.8138 40 1 6.9490 0.5993 -2.5451 41 1 7.2505 2.3535 -2.5403 42 1 7.3061 2.3516 -5.0189 43 1 7.0048 0.5973 -5.0245 44 1 8.2659 1.2891 -6.7278 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349059389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:22 Heat of formation + Delta-G solvation = -50.900836 kcal Electronic energy + Delta-G solvation = -24656.065256 eV Core-core repulsion = 21187.964680 eV Total energy + Delta-G solvation = -3468.100576 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.81025 -38.57019 -38.36402 -35.82282 -34.87028 -34.31868 -32.50245 -30.92634 -30.07391 -27.44709 -26.24901 -24.75347 -23.51328 -22.25657 -21.90993 -21.04812 -20.47780 -19.77056 -17.30860 -17.01300 -16.68894 -16.37730 -15.91978 -15.61620 -15.06036 -14.70773 -14.39524 -14.14679 -14.09299 -13.71576 -13.66778 -13.23059 -13.16040 -12.80217 -12.67978 -12.23666 -12.06109 -11.75479 -11.64225 -11.59140 -11.46811 -11.39127 -11.02652 -10.97279 -10.73010 -10.65083 -10.15748 -10.09665 -9.92283 -9.84141 -9.52170 -9.13443 -8.52086 -8.30215 -6.34202 -4.03050 1.64421 1.98558 2.89812 3.03687 3.45654 3.49551 3.65307 3.79520 3.91050 4.29174 4.42118 4.56608 4.56946 4.70800 4.71316 4.83102 5.01023 5.04261 5.19206 5.26659 5.32720 5.33944 5.41856 5.43741 5.47530 5.54742 5.57433 5.64424 5.66168 5.78670 5.79108 5.88675 5.90082 6.03462 6.30490 6.60234 6.64406 6.85425 7.25392 7.36879 7.43279 7.50799 8.11680 8.22640 8.48217 8.90503 9.68759 11.06737 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.003628 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.943413 B = 7715.883139 C = 8037.480353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.099 4.099 4 C 0.071 3.929 5 C -0.112 4.112 6 C -0.137 4.137 7 C 0.162 3.838 8 N -0.641 5.641 9 C 0.740 3.260 10 O -0.531 6.531 11 N -0.575 5.575 12 C 0.115 3.885 13 C -0.115 4.115 14 C 0.012 3.988 15 C -0.601 4.601 16 H 0.048 0.952 17 C 0.014 3.986 18 N -0.913 5.913 19 Si 1.072 2.928 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.530 3.470 24 O -0.463 6.463 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.011 0.989 43 H 0.011 0.989 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.840 0.250 20.499 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.138 4.138 4 C -0.020 4.020 5 C -0.150 4.150 6 C -0.176 4.176 7 C 0.043 3.957 8 N -0.382 5.382 9 C 0.444 3.556 10 O -0.403 6.403 11 N -0.320 5.320 12 C -0.004 4.004 13 C -0.154 4.154 14 C -0.025 4.025 15 C -0.639 4.639 16 H 0.067 0.933 17 C -0.189 4.189 18 N -0.549 5.549 19 Si 0.901 3.099 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.209 1.209 23 C 0.316 3.684 24 O -0.332 6.332 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.170 0.287 19.123 25.045 hybrid contribution -1.356 0.336 0.791 1.606 sum -17.526 0.624 19.914 26.535 Atomic orbital electron populations 1.21738 0.95226 1.01965 1.01766 1.21613 0.96166 0.95233 1.03719 1.21609 0.89472 0.98947 1.03761 1.22688 0.96763 0.86608 0.95900 1.22315 1.02271 0.97832 0.92624 1.22877 1.03237 0.93254 0.98193 1.22032 1.02088 0.97624 0.74004 1.48495 1.63313 1.18673 1.07705 1.14860 0.77320 0.84117 0.79281 1.90977 1.54965 1.22917 1.71469 1.46947 1.55652 1.08106 1.21342 1.22100 0.95248 1.03971 0.79119 1.21864 0.90836 1.00949 1.01702 1.19162 0.96339 0.96307 0.90733 1.22020 0.93047 1.53885 0.94951 0.93340 1.25866 1.06390 0.94129 0.92542 1.70753 1.15339 1.45754 1.23081 0.83499 0.74375 0.76728 0.75326 1.21439 1.21514 1.20936 1.20636 0.76905 0.85422 0.85408 1.90767 1.55053 1.15080 1.72296 0.92740 0.92347 0.92711 0.90630 0.91086 0.89719 0.91090 0.90013 0.88839 0.90070 0.89230 0.89339 0.90203 0.88868 0.89136 0.92642 0.92650 0.97055 0.97094 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -1.04 5.55 -26.73 -0.15 -1.19 16 3 C -0.10 -0.84 4.66 -26.73 -0.12 -0.96 16 4 C 0.07 0.78 0.50 -131.11 -0.07 0.71 16 5 C -0.11 -0.93 6.08 -25.49 -0.16 -1.08 16 6 C -0.14 -0.82 7.04 -24.89 -0.18 -1.00 16 7 C 0.16 1.25 7.22 -2.83 -0.02 1.23 16 8 N -0.64 -7.93 3.96 -162.53 -0.64 -8.57 16 9 C 0.74 12.39 8.50 -88.55 -0.75 11.64 16 10 O -0.53 -10.70 17.52 5.33 0.09 -10.61 16 11 N -0.58 -9.71 2.63 -121.03 -0.32 -10.03 16 12 C 0.11 2.15 5.78 -4.04 -0.02 2.13 16 13 C -0.12 -2.56 5.48 -26.73 -0.15 -2.70 16 14 C 0.01 0.32 4.28 -27.89 -0.12 0.20 16 15 C -0.60 -17.80 9.11 -34.44 -0.31 -18.11 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 18 N -0.91 -28.66 13.65 55.43 0.76 -27.90 16 19 Si 1.07 26.11 29.90 -169.99 -5.08 21.03 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.53 8.02 6.60 -10.67 -0.07 7.95 16 24 O -0.46 -7.97 16.59 5.60 0.09 -7.87 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.80 6.66 -51.92 -0.35 0.45 16 29 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 30 H 0.08 0.52 7.36 -51.92 -0.38 0.14 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 33 H 0.09 0.58 6.20 -51.93 -0.32 0.26 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.44 7.53 -51.93 -0.39 0.05 16 38 H 0.09 1.74 7.82 -51.93 -0.41 1.33 16 39 H 0.09 1.62 8.04 -51.92 -0.42 1.21 16 40 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.01 0.31 8.01 -51.93 -0.42 -0.11 16 43 H 0.01 0.29 8.01 -51.92 -0.42 -0.12 16 44 H 0.27 8.38 7.22 -40.82 -0.29 8.08 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -35.61 353.93 -8.75 -44.37 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -7.14 Total: -4.26 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.84 Total: -1.49 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.21 Total: -46.51 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.19 Total: -18.48 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.61 -8.75 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349059389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.535 kcal (2) G-P(sol) polarization free energy of solvation -35.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds