Wall clock time and date at job start Tue Mar 31 2020 06:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47073 * 2 1 4 4 C 1.53004 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.53705 * 112.37849 * 297.00634 * 4 3 2 6 6 C 1.54661 * 104.59704 * 264.14379 * 5 4 3 7 7 C 1.54837 * 104.81183 * 358.45734 * 6 5 4 8 8 N 1.46946 * 104.17336 * 335.90958 * 7 6 5 9 9 C 1.33344 * 150.55797 * 224.90208 * 8 7 6 10 10 O 1.21539 * 124.21844 * 337.26726 * 9 8 7 11 11 N 1.34378 * 111.56661 * 157.24025 * 9 8 7 12 12 C 1.46500 * 124.34036 * 190.84157 * 11 9 8 13 13 C 1.52996 * 109.47223 * 90.02781 * 12 11 9 14 14 C 1.52998 * 109.47089 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99983 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 C 1.35173 * 111.31803 * 11.10990 * 11 9 8 24 24 O 1.21229 * 127.35022 * 182.32430 * 23 11 9 25 25 H 1.08998 * 109.47074 * 59.99652 * 1 2 3 26 26 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46610 * 299.99860 * 1 2 3 28 28 H 1.09008 * 109.46513 * 240.00404 * 2 1 3 29 29 H 1.08998 * 109.47074 * 120.00348 * 2 1 3 30 30 H 1.09008 * 109.47121 * 60.00777 * 3 2 1 31 31 H 1.08998 * 109.47455 * 300.00115 * 3 2 1 32 32 H 1.08999 * 110.40746 * 145.36387 * 5 4 3 33 33 H 1.08994 * 110.51307 * 22.97626 * 5 4 3 34 34 H 1.08996 * 110.37073 * 239.62600 * 6 5 4 35 35 H 1.09002 * 110.46481 * 117.33641 * 6 5 4 36 36 H 1.09001 * 110.49205 * 217.23895 * 7 6 5 37 37 H 1.08997 * 110.49247 * 94.58438 * 7 6 5 38 38 H 1.08996 * 109.47285 * 330.01875 * 12 11 9 39 39 H 1.09010 * 109.47025 * 210.02580 * 12 11 9 40 40 H 1.08996 * 109.47176 * 60.00132 * 13 12 11 41 41 H 1.08997 * 109.47205 * 299.99644 * 13 12 11 42 42 H 1.09004 * 109.47223 * 59.99393 * 14 13 12 43 43 H 1.09010 * 109.47071 * 299.99745 * 14 13 12 44 44 H 0.97000 * 119.99462 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.1558 0.7969 1.2653 6 6 4.4458 1.9860 2.2108 7 6 4.0409 3.2427 1.4019 8 7 4.1447 2.8167 -0.0006 9 6 4.5351 3.0394 -1.2560 10 8 4.7413 4.1428 -1.7221 11 7 4.6727 1.8918 -1.9414 12 6 5.3008 1.7875 -3.2608 13 6 6.7996 1.5295 -3.0932 14 6 7.4556 1.4212 -4.4711 15 6 8.9317 1.1664 -4.3060 16 1 9.3593 1.0899 -3.3173 17 6 9.7366 1.0321 -5.4174 18 7 9.2162 1.1258 -6.6216 19 14 11.5665 0.7171 -5.2128 20 1 12.2884 2.0135 -5.1537 21 1 11.8013 -0.0379 -3.9557 22 1 12.0645 -0.0746 -6.3662 23 6 4.1520 0.8470 -1.2600 24 8 4.1539 -0.3199 -1.5888 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 5.0776 0.2653 1.0292 33 1 3.4323 0.1189 1.7180 34 1 5.5059 2.0215 2.4616 35 1 3.8447 1.9080 3.1167 36 1 4.7288 4.0640 1.6031 37 1 3.0175 3.5346 1.6373 38 1 5.1513 2.7176 -3.8090 39 1 4.8499 0.9634 -3.8138 40 1 6.9490 0.5993 -2.5451 41 1 7.2505 2.3535 -2.5403 42 1 7.3061 2.3516 -5.0189 43 1 7.0048 0.5973 -5.0245 44 1 8.2659 1.2891 -6.7278 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349059389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:22 Heat of formation + Delta-G solvation = -73.807544 kcal Electronic energy + Delta-G solvation = -24657.058565 eV Core-core repulsion = 21187.964680 eV Total energy + Delta-G solvation = -3469.093885 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.93477 -39.84210 -39.40498 -37.33636 -36.23667 -35.49234 -34.16146 -32.21523 -30.96783 -28.74275 -27.47669 -25.82762 -25.36094 -23.22249 -22.95244 -22.50567 -21.72341 -20.73273 -19.08870 -18.29521 -18.04460 -17.52795 -17.02483 -16.74834 -16.01469 -15.86947 -15.72356 -15.66830 -15.42895 -15.16062 -14.85189 -14.68656 -13.99454 -13.79631 -13.53676 -13.46972 -13.38393 -13.20759 -12.86244 -12.70453 -12.61736 -12.35981 -12.18195 -12.03780 -11.92814 -11.91809 -11.76903 -11.64862 -11.57934 -11.18639 -11.03159 -10.68200 -10.60145 -10.10488 -8.75607 -6.46330 0.43558 0.83227 1.48697 1.58618 1.66218 1.76852 1.99194 2.52618 2.81639 3.09818 3.11126 3.54130 3.61966 3.70514 3.91419 3.99457 4.07216 4.13487 4.18743 4.22032 4.24479 4.31724 4.45060 4.52523 4.64396 4.68003 4.74308 4.75270 4.79569 4.83207 4.89785 4.99144 5.10715 5.20148 5.21491 5.26855 5.29528 5.31608 5.44798 5.51996 5.89875 6.07201 6.10064 6.23372 6.50037 6.88164 7.35155 8.65679 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.003628 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.943413 B = 7715.883139 C = 8037.480353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.093 4.093 4 C 0.080 3.920 5 C -0.112 4.112 6 C -0.124 4.124 7 C 0.148 3.852 8 N -0.636 5.636 9 C 0.732 3.268 10 O -0.577 6.577 11 N -0.585 5.585 12 C 0.125 3.875 13 C -0.096 4.096 14 C 0.014 3.986 15 C -0.623 4.623 16 H 0.047 0.953 17 C -0.038 4.038 18 N -0.934 5.934 19 Si 1.122 2.878 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.278 1.278 23 C 0.520 3.480 24 O -0.490 6.490 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.045 0.955 42 H -0.004 1.004 43 H -0.001 1.001 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.742 0.076 24.029 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.131 4.131 4 C -0.011 4.011 5 C -0.150 4.150 6 C -0.162 4.162 7 C 0.031 3.969 8 N -0.375 5.375 9 C 0.436 3.564 10 O -0.453 6.453 11 N -0.330 5.330 12 C 0.004 3.996 13 C -0.134 4.134 14 C -0.024 4.024 15 C -0.661 4.661 16 H 0.065 0.935 17 C -0.235 4.235 18 N -0.571 5.571 19 Si 0.943 3.057 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.203 1.203 23 C 0.309 3.691 24 O -0.361 6.361 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.142 0.858 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.014 0.986 43 H 0.017 0.983 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.122 0.104 22.731 28.458 hybrid contribution -1.139 0.367 -0.281 1.229 sum -18.261 0.470 22.451 28.943 Atomic orbital electron populations 1.21722 0.93958 1.02364 1.02379 1.21597 0.97206 0.94658 1.03031 1.21688 0.87030 0.99549 1.04878 1.22976 0.98248 0.85380 0.94453 1.22425 1.01909 0.99021 0.91642 1.22911 1.03994 0.90662 0.98624 1.22629 1.04389 0.98720 0.71162 1.48733 1.61704 1.19492 1.07581 1.14994 0.77459 0.83264 0.80653 1.90935 1.57372 1.24269 1.72722 1.46974 1.55858 1.09311 1.20901 1.21711 0.93122 1.03945 0.80836 1.21559 0.93008 1.00081 0.98790 1.19071 0.95664 0.94879 0.92772 1.22437 0.94638 1.53936 0.95099 0.93478 1.27525 1.11102 0.92996 0.91903 1.70886 1.14731 1.47389 1.24072 0.82885 0.68944 0.77678 0.76242 1.19633 1.19480 1.20323 1.21535 0.76188 0.84795 0.86627 1.90743 1.55962 1.16083 1.73300 0.93633 0.92132 0.90575 0.93915 0.89232 0.85827 0.92679 0.92280 0.85828 0.90461 0.84886 0.89243 0.86728 0.89177 0.88712 0.93276 0.93668 0.98551 0.98314 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.13 -1.75 5.55 30.59 0.17 -1.58 16 3 C -0.09 -1.31 4.66 30.59 0.14 -1.17 16 4 C 0.08 1.59 0.50 2.71 0.00 1.59 16 5 C -0.11 -1.50 6.08 31.40 0.19 -1.30 16 6 C -0.12 -0.94 7.04 31.79 0.22 -0.71 16 7 C 0.15 1.74 7.22 86.92 0.63 2.37 16 8 N -0.64 -14.79 3.96 -787.19 -3.12 -17.91 16 9 C 0.73 24.93 8.50 179.62 1.53 26.45 16 10 O -0.58 -24.02 17.52 -3.84 -0.07 -24.09 16 11 N -0.59 -20.45 2.63 -773.53 -2.04 -22.49 16 12 C 0.12 4.93 5.78 86.38 0.50 5.43 16 13 C -0.10 -4.46 5.48 30.59 0.17 -4.29 16 14 C 0.01 0.77 4.28 29.85 0.13 0.89 16 15 C -0.62 -37.84 9.11 25.60 0.23 -37.60 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 17 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 18 N -0.93 -59.89 13.65 21.45 0.29 -59.60 16 19 Si 1.12 52.27 29.90 68.60 2.05 54.32 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 C 0.52 15.93 6.60 87.68 0.58 16.51 16 24 O -0.49 -17.35 16.59 -2.87 -0.05 -17.39 16 25 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.04 0.88 6.66 -2.38 -0.02 0.87 16 29 H 0.09 0.90 6.43 -2.39 -0.02 0.88 16 30 H 0.12 0.85 7.36 -2.38 -0.02 0.83 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.10 7.85 -2.39 -0.02 1.08 16 33 H 0.12 0.94 6.20 -2.39 -0.01 0.92 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 0.63 7.53 -2.39 -0.02 0.61 16 38 H 0.09 3.59 7.82 -2.39 -0.02 3.57 16 39 H 0.09 3.61 8.04 -2.38 -0.02 3.59 16 40 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.00 -0.22 8.01 -2.38 -0.02 -0.24 16 43 H 0.00 -0.08 8.01 -2.38 -0.02 -0.10 16 44 H 0.26 16.62 7.22 -92.71 -0.67 15.95 16 Total: -1.00 -81.59 353.93 3.81 -77.77 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.08 Total: 5.48 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.66 Total: 3.91 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -4.86 Total: -100.00 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.11 Total: -41.48 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.05 Total: 54.32 kcal Total: -81.59 3.81 -77.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349059389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.965 kcal (2) G-P(sol) polarization free energy of solvation -81.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds