Wall clock time and date at job start Tue Mar 31 2020 06:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47268 * 2 1 4 4 N 1.29935 * 125.37685 * 90.27706 * 3 2 1 5 5 C 1.36070 * 108.47558 * 180.19090 * 4 3 2 6 6 C 1.47413 * 126.44935 * 179.86758 * 5 4 3 7 7 O 1.21611 * 120.00107 * 185.42884 * 6 5 4 8 8 N 1.34784 * 119.99968 * 5.42264 * 6 5 4 9 9 C 1.46495 * 119.99718 * 5.38222 * 8 6 5 10 10 C 1.50703 * 109.46970 * 274.41443 * 9 8 6 11 11 H 1.07999 * 120.00418 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99931 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99889 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00111 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47047 * 89.99619 * 14 12 10 16 16 H 1.48501 * 109.47199 * 209.99744 * 14 12 10 17 17 H 1.48502 * 109.47073 * 329.99851 * 14 12 10 18 18 C 1.46499 * 119.99846 * 185.10423 * 8 6 5 19 19 C 1.53000 * 109.47398 * 269.09689 * 18 8 6 20 20 C 1.52997 * 109.47391 * 180.02562 * 19 18 8 21 21 C 1.53003 * 109.46966 * 64.99766 * 20 19 18 22 22 C 1.52995 * 109.47176 * 184.99941 * 20 19 18 23 23 C 1.36092 * 107.10059 * 359.59869 * 5 4 3 24 24 O 1.34050 * 125.37600 * 270.02848 * 3 2 1 25 25 H 1.09003 * 109.46631 * 299.99671 * 1 2 3 26 26 H 1.08989 * 109.47425 * 59.99502 * 1 2 3 27 27 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46433 * 239.99826 * 2 1 3 29 29 H 1.08998 * 109.46956 * 120.00205 * 2 1 3 30 30 H 1.08996 * 109.47353 * 34.41663 * 9 8 6 31 31 H 1.09001 * 109.46854 * 154.41970 * 9 8 6 32 32 H 0.96993 * 120.00062 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47417 * 29.09989 * 18 8 6 34 34 H 1.08997 * 109.47085 * 149.09574 * 18 8 6 35 35 H 1.08995 * 109.46699 * 300.00524 * 19 18 8 36 36 H 1.08997 * 109.46603 * 60.00077 * 19 18 8 37 37 H 1.08998 * 109.46941 * 305.00071 * 20 19 18 38 38 H 1.08999 * 109.46844 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.47100 * 300.00438 * 21 20 19 40 40 H 1.09000 * 109.46636 * 60.00035 * 21 20 19 41 41 H 1.09004 * 109.46953 * 60.00035 * 22 20 19 42 42 H 1.08998 * 109.46994 * 179.97438 * 22 20 19 43 43 H 1.08998 * 109.47292 * 299.99915 * 22 20 19 44 44 H 1.07997 * 126.52394 * 180.27521 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2880 2.1283 1.0594 5 6 2.7162 3.3578 0.6639 6 6 3.1104 4.4729 1.5438 7 8 3.3820 5.5578 1.0661 8 7 3.1698 4.2901 2.8779 9 6 2.9581 2.9558 3.4444 10 6 1.4820 2.7198 3.6358 11 1 0.7725 3.4867 3.3623 12 6 1.0372 1.5245 4.1600 13 7 1.9011 0.5903 4.4926 14 14 -0.7924 1.2316 4.3965 15 1 -1.3583 0.6181 3.1683 16 1 -1.0027 0.3181 5.5483 17 1 -1.4708 2.5259 4.6610 18 6 3.4520 5.4245 3.7608 19 6 4.9615 5.5324 3.9860 20 6 5.2563 6.7167 4.9086 21 6 4.6590 6.4471 6.2912 22 6 6.7699 6.9012 5.0341 23 6 2.7177 3.3624 -0.6970 24 8 2.2906 2.1527 -1.0930 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3611 2.2045 2.7653 31 1 3.4650 2.8851 4.4068 32 1 1.5883 -0.2506 4.8610 33 1 3.0868 6.3427 3.3008 34 1 2.9519 5.2736 4.7174 35 1 5.3267 4.6142 4.4460 36 1 5.4616 5.6833 3.0294 37 1 4.8133 7.6211 4.4916 38 1 4.8693 7.2907 6.9486 39 1 3.5807 6.3156 6.2018 40 1 5.1019 5.5426 6.7082 41 1 7.1953 7.0932 4.0490 42 1 6.9798 7.7452 5.6910 43 1 7.2128 5.9968 5.4511 44 1 3.0077 4.1827 -1.3368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356268465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:04 Heat of formation + Delta-G solvation = -26.753923 kcal Electronic energy + Delta-G solvation = -24734.103257 eV Core-core repulsion = 21267.049770 eV Total energy + Delta-G solvation = -3467.053487 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.77582 -38.97197 -36.52884 -34.84447 -34.15428 -33.39822 -32.33506 -29.42141 -28.70939 -27.02422 -26.74294 -24.31948 -23.87154 -22.92999 -21.89354 -20.51539 -19.70339 -18.70484 -16.89193 -16.46160 -16.06214 -15.90455 -15.45767 -14.95219 -14.44350 -14.26264 -14.11397 -14.04690 -13.64740 -13.37075 -12.92236 -12.52418 -12.38539 -12.32559 -12.17415 -12.03780 -11.61876 -11.50319 -11.44576 -11.06267 -10.97514 -10.79282 -10.70187 -10.64766 -10.45757 -10.36702 -10.16750 -10.03978 -9.60695 -9.43483 -9.15327 -8.43262 -8.28974 -7.60230 -5.93657 -3.92257 1.69018 2.79410 3.13368 3.30180 3.37342 3.41657 3.87192 4.06715 4.46789 4.55476 5.08936 5.13120 5.17896 5.22543 5.35559 5.42404 5.47860 5.53813 5.63741 5.70091 5.75947 5.87586 5.93071 5.98573 6.01745 6.04074 6.11535 6.14305 6.21590 6.28543 6.34157 6.38310 6.42781 6.48339 6.63824 6.70816 6.73999 6.90763 7.52382 7.74301 7.96959 8.25280 8.34408 8.40586 8.94324 9.08368 9.67765 11.15265 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.005920 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.133829 B = 4728.529728 C = 6295.455002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.019 4.019 3 C 0.166 3.834 4 N -0.377 5.377 5 C -0.052 4.052 6 C 0.594 3.406 7 O -0.575 6.575 8 N -0.578 5.578 9 C 0.238 3.762 10 C -0.492 4.492 11 H 0.049 0.951 12 C 0.072 3.928 13 N -0.893 5.893 14 Si 0.881 3.119 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.120 3.880 19 C -0.127 4.127 20 C -0.093 4.093 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.022 4.022 24 O -0.209 6.209 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.258 0.742 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.558 3.100 -4.934 6.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.057 4.057 3 C -0.042 4.042 4 N -0.105 5.105 5 C -0.173 4.173 6 C 0.382 3.618 7 O -0.458 6.458 8 N -0.305 5.305 9 C 0.119 3.881 10 C -0.532 4.532 11 H 0.067 0.933 12 C -0.129 4.129 13 N -0.533 5.533 14 Si 0.710 3.290 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.003 4.003 19 C -0.166 4.166 20 C -0.112 4.112 21 C -0.207 4.207 22 C -0.202 4.202 23 C -0.095 4.095 24 O -0.097 6.097 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.628 3.215 -4.425 6.563 hybrid contribution -1.064 -0.012 -0.466 1.161 sum 2.564 3.203 -4.891 6.384 Atomic orbital electron populations 1.21783 0.93708 1.02359 1.02965 1.19951 0.96491 0.84595 1.04649 1.26646 1.01842 0.97286 0.78454 1.71755 1.11042 1.01184 1.26514 1.21880 1.08244 0.94995 0.92216 1.16855 0.77404 0.85246 0.82336 1.90695 1.53312 1.25915 1.75853 1.48175 1.65718 1.12101 1.04553 1.19717 0.97269 0.76738 0.94417 1.21156 0.91525 1.00311 1.40172 0.93282 1.24685 0.96646 0.95797 0.95789 1.69923 1.33153 1.06174 1.44068 0.86790 0.86685 0.77953 0.77597 1.20620 1.21453 1.20347 1.21419 0.94854 0.89571 0.94498 1.21991 0.97133 0.98086 0.99387 1.21043 0.95719 0.98544 0.95907 1.21905 1.01454 1.01202 0.96130 1.21820 0.95816 1.01256 1.01300 1.25016 1.01760 0.86830 0.95924 1.84299 1.64119 1.22501 1.38775 0.91148 0.92781 0.91562 0.89896 0.87186 0.92035 0.95465 0.93216 0.91211 0.90145 0.91714 0.91958 0.91353 0.93266 0.92094 0.92578 0.92925 0.93087 0.92779 0.76354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.90 37.16 0.37 -1.80 16 2 C -0.02 -0.28 6.56 -27.88 -0.18 -0.46 16 3 C 0.17 3.10 7.56 -13.08 -0.10 3.00 16 4 N -0.38 -8.34 6.91 -7.66 -0.05 -8.39 16 5 C -0.05 -1.12 6.56 -83.02 -0.54 -1.66 16 6 C 0.59 13.34 7.62 -12.52 -0.10 13.24 16 7 O -0.58 -13.17 16.51 5.27 0.09 -13.09 16 8 N -0.58 -12.87 2.47 -176.34 -0.43 -13.30 16 9 C 0.24 5.91 4.75 -5.20 -0.02 5.89 16 10 C -0.49 -13.13 7.79 -34.44 -0.27 -13.40 16 11 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 12 C 0.07 1.92 5.46 -17.81 -0.10 1.82 16 13 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 14 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.12 2.27 5.11 -4.04 -0.02 2.25 16 19 C -0.13 -2.09 5.01 -26.73 -0.13 -2.22 16 20 C -0.09 -1.24 2.92 -90.62 -0.26 -1.51 16 21 C -0.15 -1.91 8.95 37.16 0.33 -1.58 16 22 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 23 C -0.02 -0.38 11.95 29.96 0.36 -0.02 16 24 O -0.21 -3.60 10.73 6.50 0.07 -3.53 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.05 0.71 8.14 -51.94 -0.42 0.29 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.06 1.63 5.82 -51.93 -0.30 1.33 16 31 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.07 1.32 7.47 -51.93 -0.39 0.94 16 34 H 0.08 1.51 6.50 -51.93 -0.34 1.17 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.22 3.01 8.06 -52.49 -0.42 2.59 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -30.32 364.50 -6.70 -37.03 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.25 Total: 1.57 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.33 Total: 2.20 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.25 Total: -45.59 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.16 Total: -16.61 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.32 -6.70 -37.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356268465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.273 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds