Wall clock time and date at job start Tue Mar 31 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47268 * 2 1 4 4 N 1.29935 * 125.37685 * 90.27706 * 3 2 1 5 5 C 1.36070 * 108.47558 * 180.19090 * 4 3 2 6 6 C 1.47413 * 126.44935 * 179.86758 * 5 4 3 7 7 O 1.21611 * 120.00107 * 185.42884 * 6 5 4 8 8 N 1.34784 * 119.99968 * 5.42264 * 6 5 4 9 9 C 1.46495 * 119.99718 * 5.38222 * 8 6 5 10 10 C 1.50703 * 109.46970 * 274.41443 * 9 8 6 11 11 H 1.07999 * 120.00418 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99931 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99889 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00111 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47047 * 89.99619 * 14 12 10 16 16 H 1.48501 * 109.47199 * 209.99744 * 14 12 10 17 17 H 1.48502 * 109.47073 * 329.99851 * 14 12 10 18 18 C 1.46499 * 119.99846 * 185.10423 * 8 6 5 19 19 C 1.53000 * 109.47398 * 269.09689 * 18 8 6 20 20 C 1.52997 * 109.47391 * 180.02562 * 19 18 8 21 21 C 1.53003 * 109.46966 * 64.99766 * 20 19 18 22 22 C 1.52995 * 109.47176 * 184.99941 * 20 19 18 23 23 C 1.36092 * 107.10059 * 359.59869 * 5 4 3 24 24 O 1.34050 * 125.37600 * 270.02848 * 3 2 1 25 25 H 1.09003 * 109.46631 * 299.99671 * 1 2 3 26 26 H 1.08989 * 109.47425 * 59.99502 * 1 2 3 27 27 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46433 * 239.99826 * 2 1 3 29 29 H 1.08998 * 109.46956 * 120.00205 * 2 1 3 30 30 H 1.08996 * 109.47353 * 34.41663 * 9 8 6 31 31 H 1.09001 * 109.46854 * 154.41970 * 9 8 6 32 32 H 0.96993 * 120.00062 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47417 * 29.09989 * 18 8 6 34 34 H 1.08997 * 109.47085 * 149.09574 * 18 8 6 35 35 H 1.08995 * 109.46699 * 300.00524 * 19 18 8 36 36 H 1.08997 * 109.46603 * 60.00077 * 19 18 8 37 37 H 1.08998 * 109.46941 * 305.00071 * 20 19 18 38 38 H 1.08999 * 109.46844 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.47100 * 300.00438 * 21 20 19 40 40 H 1.09000 * 109.46636 * 60.00035 * 21 20 19 41 41 H 1.09004 * 109.46953 * 60.00035 * 22 20 19 42 42 H 1.08998 * 109.46994 * 179.97438 * 22 20 19 43 43 H 1.08998 * 109.47292 * 299.99915 * 22 20 19 44 44 H 1.07997 * 126.52394 * 180.27521 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2880 2.1283 1.0594 5 6 2.7162 3.3578 0.6639 6 6 3.1104 4.4729 1.5438 7 8 3.3820 5.5578 1.0661 8 7 3.1698 4.2901 2.8779 9 6 2.9581 2.9558 3.4444 10 6 1.4820 2.7198 3.6358 11 1 0.7725 3.4867 3.3623 12 6 1.0372 1.5245 4.1600 13 7 1.9011 0.5903 4.4926 14 14 -0.7924 1.2316 4.3965 15 1 -1.3583 0.6181 3.1683 16 1 -1.0027 0.3181 5.5483 17 1 -1.4708 2.5259 4.6610 18 6 3.4520 5.4245 3.7608 19 6 4.9615 5.5324 3.9860 20 6 5.2563 6.7167 4.9086 21 6 4.6590 6.4471 6.2912 22 6 6.7699 6.9012 5.0341 23 6 2.7177 3.3624 -0.6970 24 8 2.2906 2.1527 -1.0930 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3611 2.2045 2.7653 31 1 3.4650 2.8851 4.4068 32 1 1.5883 -0.2506 4.8610 33 1 3.0868 6.3427 3.3008 34 1 2.9519 5.2736 4.7174 35 1 5.3267 4.6142 4.4460 36 1 5.4616 5.6833 3.0294 37 1 4.8133 7.6211 4.4916 38 1 4.8693 7.2907 6.9486 39 1 3.5807 6.3156 6.2018 40 1 5.1019 5.5426 6.7082 41 1 7.1953 7.0932 4.0490 42 1 6.9798 7.7452 5.6910 43 1 7.2128 5.9968 5.4511 44 1 3.0077 4.1827 -1.3368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356268465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:03 Heat of formation + Delta-G solvation = -44.322518 kcal Electronic energy + Delta-G solvation = -24734.865088 eV Core-core repulsion = 21267.049770 eV Total energy + Delta-G solvation = -3467.815319 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.23956 -40.67354 -37.87337 -36.50515 -35.61851 -34.71181 -34.33476 -30.90549 -30.18515 -28.70069 -27.98708 -25.79458 -25.15793 -24.87117 -23.40870 -21.92679 -20.88421 -20.31582 -18.65060 -18.28704 -17.59561 -17.49085 -17.10023 -16.34989 -16.19108 -15.71834 -15.60923 -15.33455 -14.91252 -14.68178 -14.34423 -14.24269 -14.05873 -13.72106 -13.56641 -13.32397 -13.14426 -12.88787 -12.75375 -12.69811 -12.56747 -12.25073 -12.09234 -12.02319 -11.97285 -11.84291 -11.60751 -11.53959 -11.41410 -11.19342 -10.81305 -10.36141 -9.92791 -9.38921 -8.01247 -6.06380 0.21464 1.23787 1.40273 1.42207 1.50149 1.74588 2.22951 2.39980 2.51974 3.11466 3.31844 3.72393 3.91184 3.93918 3.98384 4.07788 4.26412 4.29323 4.30865 4.47774 4.55223 4.65687 4.71920 4.77026 4.80271 4.83275 4.91432 4.94512 4.96502 5.03740 5.09744 5.13203 5.14941 5.21031 5.30549 5.32952 5.47358 5.50299 5.52462 5.82841 5.90433 6.27483 6.51633 6.78597 6.97073 7.24930 7.57112 9.06939 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.005920 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.133829 B = 4728.529728 C = 6295.455002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.018 4.018 3 C 0.169 3.831 4 N -0.425 5.425 5 C -0.101 4.101 6 C 0.589 3.411 7 O -0.586 6.586 8 N -0.586 5.586 9 C 0.260 3.740 10 C -0.496 4.496 11 H 0.029 0.971 12 C 0.039 3.961 13 N -0.916 5.916 14 Si 0.932 3.068 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.118 3.882 19 C -0.115 4.115 20 C -0.089 4.089 21 C -0.148 4.148 22 C -0.141 4.141 23 C 0.013 3.987 24 O -0.197 6.197 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.008 0.992 32 H 0.261 0.739 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.308 3.092 -6.041 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.056 4.056 3 C -0.040 4.040 4 N -0.153 5.153 5 C -0.221 4.221 6 C 0.378 3.622 7 O -0.470 6.470 8 N -0.314 5.314 9 C 0.140 3.860 10 C -0.535 4.535 11 H 0.048 0.952 12 C -0.161 4.161 13 N -0.556 5.556 14 Si 0.759 3.241 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.005 4.005 19 C -0.154 4.154 20 C -0.108 4.108 21 C -0.205 4.205 22 C -0.198 4.198 23 C -0.061 4.061 24 O -0.083 6.083 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.382 3.217 -5.526 7.233 hybrid contribution -0.980 -0.005 -0.189 0.998 sum 2.402 3.212 -5.715 6.982 Atomic orbital electron populations 1.21748 0.93076 1.03802 1.01600 1.20160 0.96870 0.82673 1.05885 1.27271 1.00573 0.98164 0.78042 1.71632 1.12847 1.02146 1.28661 1.21927 1.11401 0.95041 0.93683 1.17110 0.77028 0.85690 0.82405 1.90661 1.54058 1.26353 1.75921 1.48192 1.66074 1.11916 1.05195 1.19246 0.96027 0.77822 0.92916 1.21121 0.91921 1.00064 1.40373 0.95239 1.25212 1.00019 0.95448 0.95394 1.70005 1.34677 1.06477 1.44468 0.85990 0.82540 0.77584 0.78025 1.19396 1.20788 1.20900 1.21567 0.96708 0.88432 0.93758 1.21877 0.94852 0.99133 0.99531 1.21034 0.97302 0.97062 0.95405 1.21887 1.00546 1.01939 0.96132 1.21789 0.94088 1.02075 1.01878 1.25639 0.98381 0.87163 0.94917 1.84341 1.63663 1.22279 1.38063 0.95173 0.91329 0.88742 0.85705 0.88802 0.93634 0.97423 0.92994 0.91277 0.90449 0.92879 0.93052 0.90812 0.90974 0.93268 0.93127 0.92875 0.91029 0.92904 0.72652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.90 71.98 0.71 -3.18 16 2 C -0.02 -0.51 6.56 29.85 0.20 -0.32 16 3 C 0.17 6.14 7.56 88.39 0.67 6.80 16 4 N -0.43 -19.05 6.91 -293.04 -2.02 -21.08 16 5 C -0.10 -4.31 6.56 40.40 0.27 -4.05 16 6 C 0.59 26.98 7.62 86.66 0.66 27.65 16 7 O -0.59 -26.98 16.51 -4.07 -0.07 -27.05 16 8 N -0.59 -27.09 2.47 -830.05 -2.05 -29.13 16 9 C 0.26 13.49 4.75 85.63 0.41 13.90 16 10 C -0.50 -27.26 7.79 25.60 0.20 -27.06 16 11 H 0.03 1.71 7.81 -2.91 -0.02 1.68 16 12 C 0.04 2.09 5.46 84.65 0.46 2.55 16 13 N -0.92 -51.31 13.29 21.45 0.28 -51.02 16 14 Si 0.93 43.24 29.54 68.60 2.03 45.26 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 C 0.12 4.61 5.11 86.38 0.44 5.05 16 19 C -0.12 -3.86 5.01 30.59 0.15 -3.71 16 20 C -0.09 -2.32 2.92 -10.80 -0.03 -2.35 16 21 C -0.15 -3.66 8.95 71.98 0.64 -3.02 16 22 C -0.14 -3.08 9.19 71.98 0.66 -2.42 16 23 C 0.01 0.44 11.95 67.32 0.80 1.25 16 24 O -0.20 -6.34 10.73 0.35 0.00 -6.33 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.05 2.54 5.82 -2.39 -0.01 2.52 16 31 H 0.01 0.43 8.04 -2.39 -0.02 0.41 16 32 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.07 2.69 7.47 -2.39 -0.02 2.67 16 34 H 0.08 3.03 6.50 -2.39 -0.02 3.02 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.32 6.56 -2.39 -0.02 1.30 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.26 6.27 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -66.77 364.50 5.39 -61.38 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.97 Total: 16.88 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.24 Total: 11.09 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.79 Total: -101.23 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.06 Total: -33.38 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.77 5.39 -61.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356268465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.056 kcal (2) G-P(sol) polarization free energy of solvation -66.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds